Wall clock time and date at job start Tue Mar 31 2020 18:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00296 * 2 1 4 4 C 1.53002 * 109.46853 * 66.04509 * 3 2 1 5 5 N 1.46496 * 109.47425 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 3 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 H 1.08993 * 115.51063 * 325.35423 * 8 6 5 10 10 C 1.52999 * 117.42560 * 110.61903 * 8 6 5 11 11 H 1.08995 * 119.98818 * 355.24960 * 10 8 6 12 12 C 1.53004 * 117.42572 * 179.97438 * 8 6 5 13 13 H 1.08994 * 119.98658 * 5.86111 * 12 8 6 14 14 C 1.55927 * 117.17425 * 160.66832 * 12 8 6 15 15 H 1.09005 * 115.91618 * 263.04990 * 14 12 8 16 16 C 1.55919 * 104.49873 * 134.16283 * 14 12 8 17 17 C 1.54584 * 104.64534 * 289.71802 * 16 14 12 18 18 C 1.55920 * 104.64226 * 0.02562 * 17 16 14 19 19 H 1.09001 * 115.92147 * 199.96687 * 18 17 16 20 20 C 1.56960 * 100.65122 * 29.29561 * 14 12 8 21 21 C 1.46902 * 110.99752 * 236.04753 * 2 1 3 22 22 C 1.50698 * 109.47377 * 293.95619 * 21 2 1 23 23 O 1.21286 * 119.99931 * 359.97438 * 22 21 2 24 24 N 1.34779 * 119.99945 * 180.02562 * 22 21 2 25 25 C 1.37103 * 119.99661 * 179.97438 * 24 22 21 26 26 H 1.08001 * 120.00027 * 359.97438 * 25 24 22 27 27 C 1.38951 * 119.99481 * 179.97438 * 25 24 22 28 28 N 1.31404 * 120.00391 * 359.97438 * 27 25 24 29 29 Si 1.86803 * 119.99450 * 179.97438 * 27 25 24 30 30 H 1.48494 * 109.47483 * 0.02562 * 29 27 25 31 31 H 1.48504 * 109.46894 * 120.00415 * 29 27 25 32 32 H 1.48495 * 109.46935 * 239.99706 * 29 27 25 33 33 H 1.09010 * 109.47010 * 59.99863 * 1 2 3 34 34 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47564 * 299.99768 * 1 2 3 36 36 H 1.09000 * 109.47321 * 306.05317 * 3 2 1 37 37 H 1.08987 * 109.47458 * 186.04431 * 3 2 1 38 38 H 1.09004 * 109.46930 * 60.00139 * 4 3 2 39 39 H 1.09000 * 109.47312 * 300.00083 * 4 3 2 40 40 H 0.96999 * 119.99691 * 359.97438 * 5 4 3 41 41 H 1.09002 * 110.40253 * 48.51664 * 16 14 12 42 42 H 1.09008 * 110.40031 * 170.81407 * 16 14 12 43 43 H 1.08998 * 110.39905 * 118.79181 * 17 16 14 44 44 H 1.08999 * 110.40298 * 241.21244 * 17 16 14 45 45 H 1.08993 * 112.02226 * 170.30863 * 20 14 12 46 46 H 1.08999 * 112.02425 * 296.83217 * 20 14 12 47 47 H 1.09004 * 109.47059 * 53.95725 * 21 2 1 48 48 H 1.09004 * 109.47012 * 173.95345 * 21 2 1 49 49 H 0.96998 * 120.00190 * 359.97438 * 24 22 21 50 50 H 0.97005 * 120.00398 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1560 3.4252 1.3182 6 6 1.9554 4.2240 2.3850 7 8 1.3450 3.8088 3.3472 8 6 2.4955 5.6309 2.3850 9 1 3.4474 5.7683 1.8722 10 6 1.4823 6.7747 2.3065 11 1 0.4227 6.5558 2.1755 12 6 2.2332 6.4865 3.6261 13 1 1.7593 6.0443 4.5024 14 6 3.1478 7.7312 3.8392 15 1 3.9934 7.5914 4.5127 16 6 2.1623 8.8806 4.2118 17 6 1.3962 9.1783 2.9026 18 6 1.9905 8.1803 1.8625 19 1 1.8404 8.4389 0.8143 20 6 3.4978 8.0921 2.3523 21 6 1.9954 -0.7660 -1.1376 22 6 1.6368 -2.2204 -0.9730 23 8 1.0054 -2.5833 -0.0032 24 7 2.0188 -3.1180 -1.9030 25 6 1.6930 -4.4413 -1.7529 26 1 1.1307 -4.7644 -0.8893 27 6 2.0863 -5.3667 -2.7120 28 7 2.7700 -4.9734 -3.7630 29 14 1.6430 -7.1697 -2.5071 30 1 0.8757 -7.3510 -1.2488 31 1 0.8154 -7.6099 -3.6588 32 1 2.8852 -7.9815 -2.4513 33 1 -0.3633 0.5139 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 1.5611 1.9274 -0.8308 37 1 3.0797 1.3443 -0.1082 38 1 2.0658 1.5014 2.1492 39 1 0.5472 2.0844 1.4265 40 1 2.6483 3.7557 0.5505 41 1 1.4727 8.5526 4.9896 42 1 2.7133 9.7619 4.5406 43 1 0.3298 8.9966 3.0367 44 1 1.5705 10.2065 2.5858 45 1 4.0053 9.0534 2.2737 46 1 4.0585 7.2975 1.8600 47 1 1.5611 -0.3871 -2.0628 48 1 3.0797 -0.6611 -1.1757 49 1 2.5241 -2.8279 -2.6784 50 1 3.0449 -5.6195 -4.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663342240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:55 Heat of formation + Delta-G solvation = -25.340061 kcal Electronic energy + Delta-G solvation = -27925.840839 eV Core-core repulsion = 23954.121372 eV Total energy + Delta-G solvation = -3971.719467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69181 -39.44516 -38.61614 -36.79640 -34.65502 -33.89945 -33.79606 -31.25553 -29.69484 -29.37022 -28.46094 -27.71396 -25.74538 -24.71144 -23.41834 -22.10277 -21.24319 -20.95710 -19.41315 -19.17209 -18.99257 -17.85461 -17.78014 -16.42799 -16.30605 -16.12791 -15.78237 -15.72857 -15.05063 -14.78810 -14.60146 -14.20330 -13.96230 -13.58182 -13.41540 -13.30753 -13.13780 -13.03292 -12.68928 -12.13582 -11.98989 -11.90223 -11.85758 -11.70888 -11.61624 -11.52110 -11.40835 -11.33406 -11.28225 -11.06043 -10.95364 -10.72154 -10.33895 -10.27572 -10.22527 -10.06527 -9.96768 -9.49015 -9.19574 -8.48348 -7.99169 -7.89355 -6.42028 -3.82679 2.26023 2.79365 3.16455 3.27213 3.34652 3.41860 3.82774 3.90011 3.98087 4.06241 4.10850 4.28794 4.51676 4.58579 4.65432 4.70477 4.78048 4.84633 4.86211 4.95249 4.98318 5.03439 5.12017 5.13581 5.24566 5.31715 5.39067 5.49071 5.53075 5.61320 5.63051 5.67202 5.67589 5.68696 5.76697 5.83746 5.86367 5.89531 5.92688 5.94358 6.00674 6.24394 6.28173 6.55333 7.18682 7.29556 7.33663 7.55501 8.05372 8.06529 8.61639 9.18252 9.54145 10.06008 10.75795 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.041999 B = 0.001516 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.529390 B =18464.302842 C =18686.131101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.122 3.878 5 N -0.725 5.725 6 C 0.544 3.456 7 O -0.537 6.537 8 C -0.166 4.166 9 H 0.125 0.875 10 C -0.136 4.136 11 H 0.114 0.886 12 C -0.127 4.127 13 H 0.124 0.876 14 C -0.075 4.075 15 H 0.101 0.899 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.072 4.072 19 H 0.101 0.899 20 C -0.139 4.139 21 C 0.047 3.953 22 C 0.444 3.556 23 O -0.576 6.576 24 N -0.565 5.565 25 C -0.298 4.298 26 H 0.104 0.896 27 C 0.022 3.978 28 N -0.902 5.902 29 Si 0.929 3.071 30 H -0.268 1.268 31 H -0.282 1.282 32 H -0.282 1.282 33 H 0.015 0.985 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.049 0.951 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 30.359 7.381 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.002 4.002 5 N -0.376 5.376 6 C 0.329 3.671 7 O -0.414 6.414 8 C -0.187 4.187 9 H 0.143 0.857 10 C -0.154 4.154 11 H 0.132 0.868 12 C -0.146 4.146 13 H 0.142 0.858 14 C -0.093 4.093 15 H 0.119 0.881 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.090 4.090 19 H 0.119 0.881 20 C -0.176 4.176 21 C -0.084 4.084 22 C 0.229 3.771 23 O -0.460 6.460 24 N -0.201 5.201 25 C -0.428 4.428 26 H 0.122 0.878 27 C -0.179 4.179 28 N -0.544 5.544 29 Si 0.756 3.244 30 H -0.192 1.192 31 H -0.208 1.208 32 H -0.208 1.208 33 H 0.034 0.966 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.616 29.439 9.022 30.833 hybrid contribution 0.152 -0.342 -1.725 1.766 sum 1.767 29.096 7.297 30.049 Atomic orbital electron populations 1.22629 0.86478 1.04754 0.99107 1.61441 1.08954 1.10442 1.43096 1.22246 1.00753 0.89771 0.95631 1.21351 0.99586 0.80579 0.98685 1.45848 1.58012 1.14266 1.19483 1.19540 0.79325 0.85894 0.82296 1.90719 1.41089 1.75485 1.34101 1.22317 1.01633 0.89549 1.05168 0.85725 1.23527 0.97168 0.92856 1.01899 0.86767 1.23584 1.01917 0.96949 0.92120 0.85813 1.23193 0.96574 0.92796 0.96769 0.88102 1.22521 0.97842 0.97587 0.97555 1.22498 0.99846 0.98450 0.94632 1.23472 0.94725 0.92233 0.98593 0.88054 1.24078 0.96143 1.01634 0.95776 1.21871 1.00679 0.94239 0.91632 1.19706 0.85515 0.86599 0.85279 1.90494 1.43845 1.80089 1.31554 1.41868 1.49448 1.07369 1.21449 1.19761 1.32859 0.82247 1.07901 0.87822 1.25255 0.96823 1.00574 0.95293 1.69616 1.38177 1.35659 1.10920 0.85802 0.78207 0.81924 0.78429 1.19201 1.20801 1.20754 0.96627 0.88356 0.91866 0.94557 0.90264 0.90214 0.91199 0.76625 0.91386 0.91509 0.91433 0.91425 0.90757 0.90375 0.93347 0.89311 0.77512 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.06 0.54 0.83 16 2 N -0.52 -8.48 4.50 -244.37 -1.10 -9.58 16 3 C 0.04 0.54 5.07 -3.83 -0.02 0.52 16 4 C 0.12 1.49 5.60 -4.04 -0.02 1.47 16 5 N -0.72 -7.14 5.56 -60.29 -0.33 -7.48 16 6 C 0.54 6.28 7.61 -10.98 -0.08 6.20 16 7 O -0.54 -8.54 16.35 5.56 0.09 -8.45 16 8 C -0.17 -1.37 5.40 -91.77 -0.50 -1.86 16 9 H 0.13 0.78 6.00 -51.93 -0.31 0.47 16 10 C -0.14 -1.02 6.22 -88.25 -0.55 -1.57 16 11 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.13 -1.05 5.92 -88.25 -0.52 -1.57 16 13 H 0.12 1.25 7.83 -51.93 -0.41 0.84 16 14 C -0.08 -0.46 5.12 -85.35 -0.44 -0.89 16 15 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 16 C -0.12 -0.64 6.22 -24.34 -0.15 -0.79 16 17 C -0.12 -0.61 6.24 -24.34 -0.15 -0.77 16 18 C -0.07 -0.40 5.20 -84.32 -0.44 -0.84 16 19 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 20 C -0.14 -0.73 6.36 -21.41 -0.14 -0.86 16 21 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 22 C 0.44 10.41 7.47 -10.99 -0.08 10.33 16 23 O -0.58 -15.50 13.91 5.55 0.08 -15.43 16 24 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 25 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 26 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 27 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 28 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 29 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 30 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 31 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 32 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 33 H 0.02 0.23 8.14 -51.92 -0.42 -0.20 16 34 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 35 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 36 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.08 0.85 7.93 -51.94 -0.41 0.44 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 40 H 0.40 2.71 8.47 -40.82 -0.35 2.37 16 41 H 0.07 0.40 8.04 -51.93 -0.42 -0.01 16 42 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 43 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.39 5.92 -51.93 -0.31 0.08 16 47 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 49 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 50 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -33.26 395.33 -10.55 -43.82 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.07 Total: 10.08 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.82 Total: 3.04 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.77 Total: -55.04 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.17 Total: -23.87 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.26 -10.55 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663342240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.478 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds