Wall clock time and date at job start Tue Mar 31 2020 18:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00296 * 2 1 4 4 C 1.53002 * 109.46853 * 66.04509 * 3 2 1 5 5 N 1.46496 * 109.47425 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00266 * 180.02562 * 5 4 3 7 7 O 1.21274 * 120.00135 * 0.27234 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 H 1.08993 * 115.51063 * 325.35423 * 8 6 5 10 10 C 1.52999 * 117.42560 * 110.61903 * 8 6 5 11 11 H 1.08995 * 119.98818 * 355.24960 * 10 8 6 12 12 C 1.53004 * 117.42572 * 179.97438 * 8 6 5 13 13 H 1.08994 * 119.98658 * 5.86111 * 12 8 6 14 14 C 1.55927 * 117.17425 * 160.66832 * 12 8 6 15 15 H 1.09005 * 115.91618 * 263.04990 * 14 12 8 16 16 C 1.55919 * 104.49873 * 134.16283 * 14 12 8 17 17 C 1.54584 * 104.64534 * 289.71802 * 16 14 12 18 18 C 1.55920 * 104.64226 * 0.02562 * 17 16 14 19 19 H 1.09001 * 115.92147 * 199.96687 * 18 17 16 20 20 C 1.56960 * 100.65122 * 29.29561 * 14 12 8 21 21 C 1.46902 * 110.99752 * 236.04753 * 2 1 3 22 22 C 1.50698 * 109.47377 * 293.95619 * 21 2 1 23 23 O 1.21286 * 119.99931 * 359.97438 * 22 21 2 24 24 N 1.34779 * 119.99945 * 180.02562 * 22 21 2 25 25 C 1.37103 * 119.99661 * 179.97438 * 24 22 21 26 26 H 1.08001 * 120.00027 * 359.97438 * 25 24 22 27 27 C 1.38951 * 119.99481 * 179.97438 * 25 24 22 28 28 N 1.31404 * 120.00391 * 359.97438 * 27 25 24 29 29 Si 1.86803 * 119.99450 * 179.97438 * 27 25 24 30 30 H 1.48494 * 109.47483 * 0.02562 * 29 27 25 31 31 H 1.48504 * 109.46894 * 120.00415 * 29 27 25 32 32 H 1.48495 * 109.46935 * 239.99706 * 29 27 25 33 33 H 1.09010 * 109.47010 * 59.99863 * 1 2 3 34 34 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47564 * 299.99768 * 1 2 3 36 36 H 1.09000 * 109.47321 * 306.05317 * 3 2 1 37 37 H 1.08987 * 109.47458 * 186.04431 * 3 2 1 38 38 H 1.09004 * 109.46930 * 60.00139 * 4 3 2 39 39 H 1.09000 * 109.47312 * 300.00083 * 4 3 2 40 40 H 0.96999 * 119.99691 * 359.97438 * 5 4 3 41 41 H 1.09002 * 110.40253 * 48.51664 * 16 14 12 42 42 H 1.09008 * 110.40031 * 170.81407 * 16 14 12 43 43 H 1.08998 * 110.39905 * 118.79181 * 17 16 14 44 44 H 1.08999 * 110.40298 * 241.21244 * 17 16 14 45 45 H 1.08993 * 112.02226 * 170.30863 * 20 14 12 46 46 H 1.08999 * 112.02425 * 296.83217 * 20 14 12 47 47 H 1.09004 * 109.47059 * 53.95725 * 21 2 1 48 48 H 1.09004 * 109.47012 * 173.95345 * 21 2 1 49 49 H 0.96998 * 120.00190 * 359.97438 * 24 22 21 50 50 H 0.97005 * 120.00398 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1560 3.4252 1.3182 6 6 1.9554 4.2240 2.3850 7 8 1.3450 3.8088 3.3472 8 6 2.4955 5.6309 2.3850 9 1 3.4474 5.7683 1.8722 10 6 1.4823 6.7747 2.3065 11 1 0.4227 6.5558 2.1755 12 6 2.2332 6.4865 3.6261 13 1 1.7593 6.0443 4.5024 14 6 3.1478 7.7312 3.8392 15 1 3.9934 7.5914 4.5127 16 6 2.1623 8.8806 4.2118 17 6 1.3962 9.1783 2.9026 18 6 1.9905 8.1803 1.8625 19 1 1.8404 8.4389 0.8143 20 6 3.4978 8.0921 2.3523 21 6 1.9954 -0.7660 -1.1376 22 6 1.6368 -2.2204 -0.9730 23 8 1.0054 -2.5833 -0.0032 24 7 2.0188 -3.1180 -1.9030 25 6 1.6930 -4.4413 -1.7529 26 1 1.1307 -4.7644 -0.8893 27 6 2.0863 -5.3667 -2.7120 28 7 2.7700 -4.9734 -3.7630 29 14 1.6430 -7.1697 -2.5071 30 1 0.8757 -7.3510 -1.2488 31 1 0.8154 -7.6099 -3.6588 32 1 2.8852 -7.9815 -2.4513 33 1 -0.3633 0.5139 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 1.5611 1.9274 -0.8308 37 1 3.0797 1.3443 -0.1082 38 1 2.0658 1.5014 2.1492 39 1 0.5472 2.0844 1.4265 40 1 2.6483 3.7557 0.5505 41 1 1.4727 8.5526 4.9896 42 1 2.7133 9.7619 4.5406 43 1 0.3298 8.9966 3.0367 44 1 1.5705 10.2065 2.5858 45 1 4.0053 9.0534 2.2737 46 1 4.0585 7.2975 1.8600 47 1 1.5611 -0.3871 -2.0628 48 1 3.0797 -0.6611 -1.1757 49 1 2.5241 -2.8279 -2.6784 50 1 3.0449 -5.6195 -4.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663342240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:54 Heat of formation + Delta-G solvation = -48.981679 kcal Electronic energy + Delta-G solvation = -27926.866017 eV Core-core repulsion = 23954.121372 eV Total energy + Delta-G solvation = -3972.744645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27722 -40.51830 -40.15161 -38.18409 -36.03199 -35.51387 -34.48882 -33.27458 -30.83005 -29.83208 -29.17359 -28.84953 -27.14182 -26.09066 -24.54759 -22.61561 -22.35583 -21.75915 -20.97112 -20.03340 -19.85330 -19.50499 -18.57188 -17.74785 -17.34276 -16.89660 -16.86834 -16.58728 -16.42579 -16.20673 -15.97931 -15.49147 -15.41233 -15.03555 -14.62938 -14.40996 -13.94530 -13.82404 -13.78122 -13.46047 -13.24122 -13.04070 -12.95860 -12.59534 -12.56631 -12.45578 -12.41569 -12.39381 -12.16781 -12.14403 -12.09879 -12.03006 -11.81321 -11.46289 -11.19192 -11.00948 -10.78984 -10.58256 -10.29268 -10.15201 -9.98854 -9.25344 -8.46075 -5.94242 1.36629 1.38956 1.42081 1.55913 1.90810 2.06825 2.30279 2.74610 2.86296 3.21036 3.33915 3.44080 3.51010 3.60306 3.80628 3.93454 3.97879 4.02440 4.09674 4.17631 4.25021 4.26969 4.35234 4.43763 4.44566 4.48632 4.52743 4.58404 4.61974 4.62668 4.70100 4.83566 4.88293 4.92404 5.03571 5.07781 5.18854 5.20220 5.23404 5.24009 5.25924 5.33485 5.39016 5.42334 5.50738 5.84576 6.04286 6.15544 6.50342 6.62254 7.14609 7.19801 7.58070 8.14612 8.71470 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.041999 B = 0.001516 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.529390 B =18464.302842 C =18686.131101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.054 3.946 4 C 0.130 3.870 5 N -0.708 5.708 6 C 0.538 3.462 7 O -0.590 6.590 8 C -0.161 4.161 9 H 0.153 0.847 10 C -0.130 4.130 11 H 0.100 0.900 12 C -0.142 4.142 13 H 0.095 0.905 14 C -0.073 4.073 15 H 0.106 0.894 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.065 4.065 19 H 0.117 0.883 20 C -0.133 4.133 21 C 0.061 3.939 22 C 0.439 3.561 23 O -0.617 6.617 24 N -0.574 5.574 25 C -0.332 4.332 26 H 0.077 0.923 27 C -0.011 4.011 28 N -0.919 5.919 29 Si 0.991 3.009 30 H -0.275 1.275 31 H -0.271 1.271 32 H -0.271 1.271 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.419 0.581 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.116 0.884 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 32.598 5.603 33.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.074 4.074 4 C 0.005 3.995 5 N -0.360 5.360 6 C 0.325 3.675 7 O -0.470 6.470 8 C -0.181 4.181 9 H 0.171 0.829 10 C -0.149 4.149 11 H 0.118 0.882 12 C -0.161 4.161 13 H 0.113 0.887 14 C -0.091 4.091 15 H 0.124 0.876 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.083 4.083 19 H 0.135 0.865 20 C -0.170 4.170 21 C -0.070 4.070 22 C 0.227 3.773 23 O -0.503 6.503 24 N -0.212 5.212 25 C -0.462 4.462 26 H 0.095 0.905 27 C -0.211 4.211 28 N -0.561 5.561 29 Si 0.815 3.185 30 H -0.200 1.200 31 H -0.196 1.196 32 H -0.196 1.196 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.257 0.743 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.134 0.866 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.250 31.717 7.191 32.684 hybrid contribution -0.395 -1.001 -1.097 1.537 sum 2.855 30.716 6.094 31.444 Atomic orbital electron populations 1.22462 0.86946 1.02395 1.00535 1.61323 1.08870 1.13191 1.43129 1.22236 1.01934 0.87344 0.95866 1.21097 0.98598 0.81575 0.98235 1.45661 1.57425 1.13096 1.19813 1.20181 0.78441 0.87164 0.81676 1.90699 1.43503 1.76700 1.36106 1.22300 1.02749 0.87445 1.05614 0.82929 1.23591 0.96360 0.93718 1.01222 0.88232 1.23597 1.03112 0.97902 0.91486 0.88720 1.23245 0.96377 0.91494 0.98022 0.87595 1.22543 0.97719 0.97866 0.97510 1.22523 0.99293 0.99268 0.94426 1.23544 0.94959 0.90411 0.99432 0.86461 1.24087 0.95829 1.02600 0.94457 1.21740 1.02386 0.89875 0.93025 1.20836 0.83711 0.88928 0.83861 1.90477 1.45225 1.81497 1.33069 1.41922 1.50079 1.06968 1.22194 1.19682 1.34374 0.84147 1.07996 0.90501 1.25986 0.96285 1.04162 0.94689 1.69666 1.38170 1.37048 1.11175 0.84898 0.78244 0.77163 0.78192 1.20015 1.19589 1.19613 0.94564 0.92500 0.91062 0.91943 0.88163 0.92808 0.92658 0.74337 0.92654 0.90156 0.92313 0.89868 0.89287 0.89731 0.90845 0.86637 0.76924 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 8.96 127.69 1.14 1.94 16 2 N -0.54 -17.06 4.50 -927.05 -4.17 -21.23 16 3 C 0.05 1.15 5.07 86.30 0.44 1.58 16 4 C 0.13 3.07 5.60 86.38 0.48 3.55 16 5 N -0.71 -12.84 5.56 -463.06 -2.57 -15.41 16 6 C 0.54 12.30 7.61 87.66 0.67 12.96 16 7 O -0.59 -19.62 16.35 -3.01 -0.05 -19.67 16 8 C -0.16 -2.45 5.40 -11.54 -0.06 -2.51 16 9 H 0.15 1.44 6.00 -2.39 -0.01 1.43 16 10 C -0.13 -1.83 6.22 -9.26 -0.06 -1.88 16 11 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 12 C -0.14 -2.34 5.92 -9.26 -0.05 -2.39 16 13 H 0.09 2.10 7.83 -2.39 -0.02 2.08 16 14 C -0.07 -0.78 5.12 -7.38 -0.04 -0.82 16 15 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 16 C -0.12 -1.15 6.22 32.14 0.20 -0.95 16 17 C -0.12 -1.02 6.24 32.14 0.20 -0.82 16 18 C -0.07 -0.56 5.20 -6.71 -0.03 -0.59 16 19 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 20 C -0.13 -0.96 6.36 34.04 0.22 -0.75 16 21 C 0.06 2.01 5.45 85.56 0.47 2.47 16 22 C 0.44 20.79 7.47 87.66 0.66 21.45 16 23 O -0.62 -34.36 13.91 -3.05 -0.04 -34.41 16 24 N -0.57 -29.25 5.29 -306.98 -1.62 -30.88 16 25 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 26 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 27 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 28 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 29 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 30 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 31 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 32 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 33 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 2.34 5.82 -2.39 -0.01 2.32 16 35 H 0.07 2.14 6.47 -2.39 -0.02 2.13 16 36 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 37 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 38 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.06 1.48 6.55 -2.39 -0.02 1.47 16 40 H 0.42 4.36 8.47 -92.71 -0.79 3.58 16 41 H 0.05 0.66 8.04 -2.39 -0.02 0.64 16 42 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.06 0.61 8.07 -2.39 -0.02 0.59 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.52 5.92 -2.39 -0.01 0.51 16 47 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 48 H 0.12 3.24 7.93 -2.38 -0.02 3.22 16 49 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 50 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -75.66 395.33 -1.20 -76.86 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.55 Total: 33.57 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.50 Total: 15.00 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -8.08 Total: -116.51 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.09 Total: -54.08 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.66 -1.20 -76.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663342240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.877 kcal (2) G-P(sol) polarization free energy of solvation -75.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds