Wall clock time and date at job start Tue Mar 31 2020 18:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99792 * 2 1 4 4 O 1.21286 * 120.00367 * 5.03539 * 3 2 1 5 5 C 1.50703 * 119.99662 * 185.03232 * 3 2 1 6 6 C 1.50702 * 115.55165 * 300.51428 * 5 3 2 7 7 O 1.21281 * 119.99697 * 112.36979 * 6 5 3 8 8 N 1.34767 * 120.00330 * 292.37236 * 6 5 3 9 9 C 1.48161 * 127.02480 * 5.35283 * 8 6 5 10 10 C 1.55036 * 103.31486 * 140.98679 * 9 8 6 11 11 C 1.54180 * 102.72353 * 37.01482 * 10 9 8 12 12 C 1.47615 * 127.02669 * 185.35480 * 8 6 5 13 13 C 1.52496 * 110.02150 * 219.30469 * 11 10 9 14 14 C 1.53124 * 109.59123 * 298.37351 * 13 11 10 15 15 C 1.53192 * 109.28749 * 299.51021 * 14 13 11 16 16 N 1.46920 * 108.88974 * 55.07825 * 15 14 13 17 17 C 1.36934 * 120.68613 * 125.94341 * 16 15 14 18 18 H 1.08003 * 119.99652 * 332.81906 * 17 16 15 19 19 C 1.38814 * 120.00421 * 152.81373 * 17 16 15 20 20 N 1.31615 * 119.99681 * 343.43060 * 19 17 16 21 21 Si 1.86799 * 120.00036 * 163.42218 * 19 17 16 22 22 H 1.48503 * 109.47056 * 60.00565 * 21 19 17 23 23 H 1.48501 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47417 * 300.00648 * 21 19 17 25 25 C 1.47039 * 118.63690 * 305.96452 * 16 15 14 26 26 C 1.52999 * 117.49642 * 86.19282 * 5 3 2 27 27 C 1.53004 * 117.49817 * 154.84835 * 5 3 2 28 28 H 1.09004 * 109.47204 * 299.99770 * 1 2 3 29 29 H 1.08999 * 109.47446 * 59.99438 * 1 2 3 30 30 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99752 * 180.02562 * 2 1 3 32 32 H 1.09003 * 110.65081 * 259.44820 * 9 8 6 33 33 H 1.09001 * 110.65101 * 22.36202 * 9 8 6 34 34 H 1.08997 * 110.76238 * 278.70866 * 10 9 8 35 35 H 1.08996 * 110.75964 * 155.31808 * 10 9 8 36 36 H 1.09001 * 109.97343 * 85.95665 * 12 8 6 37 37 H 1.08998 * 110.00054 * 324.71335 * 12 8 6 38 38 H 1.08997 * 109.44834 * 178.33941 * 13 11 10 39 39 H 1.09007 * 109.44231 * 58.40237 * 13 11 10 40 40 H 1.08996 * 109.50097 * 59.45210 * 14 13 11 41 41 H 1.08994 * 109.50092 * 179.56426 * 14 13 11 42 42 H 1.09009 * 109.56332 * 174.89509 * 15 14 13 43 43 H 1.08995 * 109.56685 * 295.25147 * 15 14 13 44 44 H 0.97006 * 119.99670 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.57851 * 172.58516 * 25 16 15 46 46 H 1.08997 * 109.58276 * 292.99534 * 25 16 15 47 47 H 1.09008 * 117.49676 * 215.00200 * 26 5 3 48 48 H 1.08995 * 117.50021 * 0.02562 * 26 5 3 49 49 H 1.09008 * 117.49437 * 359.97438 * 27 5 3 50 50 H 1.08997 * 117.49798 * 144.99689 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2156 0.0922 5 6 3.6415 1.1697 -0.1145 6 6 4.3774 0.4297 0.9727 7 8 4.9831 -0.5878 0.7106 8 7 4.3625 0.8985 2.2361 9 6 3.5903 2.0539 2.7499 10 6 3.1226 1.5770 4.1490 11 6 4.3316 0.7631 4.6520 12 6 5.1122 0.3659 3.3908 13 6 3.8520 -0.4800 5.3937 14 6 3.0274 -0.0631 6.6148 15 6 3.9013 0.7749 7.5534 16 7 4.4603 1.9055 6.7999 17 6 4.2951 3.1906 7.2431 18 1 3.4395 3.4466 7.8504 19 6 5.2274 4.1643 6.9120 20 7 6.4145 3.8136 6.4646 21 14 4.7972 5.9722 7.1013 22 1 4.4700 6.2571 8.5215 23 1 5.9550 6.8029 6.6833 24 1 3.6244 6.2938 6.2491 25 6 5.2003 1.6290 5.5598 26 6 4.2428 1.1402 -1.5210 27 6 4.3042 2.4235 -0.6889 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 4.2274 2.9340 2.8368 33 1 2.7356 2.2618 2.1062 34 1 2.2387 0.9446 4.0661 35 1 2.9306 2.4277 4.8028 36 1 6.1112 0.8009 3.4188 37 1 5.1810 -0.7197 3.3219 38 1 4.7133 -1.0632 5.7194 39 1 3.2352 -1.0842 4.7283 40 1 2.1708 0.5280 6.2908 41 1 2.6789 -0.9526 7.1394 42 1 3.2955 1.1498 8.3784 43 1 4.7120 0.1597 7.9436 44 1 7.0659 4.4941 6.2329 45 1 5.4331 2.5673 5.0564 46 1 6.1235 1.0997 5.7956 47 1 5.1708 0.5854 -1.6602 48 1 3.5516 1.1195 -2.3636 49 1 3.6531 3.2463 -0.9843 50 1 5.2724 2.7130 -0.2805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671040213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:46 Heat of formation + Delta-G solvation = -36.342439 kcal Electronic energy + Delta-G solvation = -31287.931248 eV Core-core repulsion = 27315.734682 eV Total energy + Delta-G solvation = -3972.196566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05160 -40.86030 -39.70701 -37.45744 -36.99815 -35.69632 -34.89334 -32.84887 -31.73135 -30.57538 -28.81042 -27.55177 -27.20577 -25.13959 -24.18807 -23.88997 -23.50653 -22.54119 -21.83444 -20.40583 -19.77359 -18.96758 -18.28527 -17.46129 -17.37500 -17.02539 -16.78219 -16.54537 -15.93440 -15.74992 -15.62577 -15.46017 -15.08307 -15.01944 -14.64374 -14.45154 -14.14283 -13.99663 -13.91911 -13.58286 -13.34751 -13.16157 -13.10648 -12.89982 -12.72714 -12.65052 -12.54683 -12.39870 -12.24747 -12.17180 -11.84414 -11.76182 -11.67254 -11.37745 -11.30383 -11.15810 -11.03394 -10.85224 -10.49313 -10.25177 -9.84054 -8.64120 -7.84196 -5.27734 1.17229 1.34857 1.47890 1.50418 1.55990 1.71919 2.02223 2.53046 2.64553 3.19473 3.30597 3.54521 3.58291 3.61226 3.68266 3.73533 3.83528 3.94068 4.22704 4.26668 4.32495 4.38275 4.43268 4.52917 4.57226 4.58658 4.59106 4.61300 4.72805 4.75555 4.80073 4.89478 4.91047 4.91350 5.01222 5.04897 5.08948 5.16539 5.26435 5.29361 5.32236 5.37884 5.48128 5.61588 5.68190 5.77210 6.30221 6.36870 6.41897 6.88746 7.00960 7.18367 7.89849 8.41692 9.21657 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.003947 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.698052 B = 7092.974762 C = 7661.828158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.719 5.719 3 C 0.559 3.441 4 O -0.557 6.557 5 C -0.211 4.211 6 C 0.572 3.428 7 O -0.562 6.562 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.100 4.100 11 C -0.084 4.084 12 C 0.122 3.878 13 C -0.090 4.090 14 C -0.122 4.122 15 C 0.138 3.862 16 N -0.604 5.604 17 C -0.255 4.255 18 H 0.066 0.934 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.956 3.044 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.278 1.278 25 C 0.201 3.799 26 C -0.103 4.103 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.413 0.587 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.011 0.989 44 H 0.248 0.752 45 H 0.059 0.941 46 H -0.009 1.009 47 H 0.116 0.884 48 H 0.129 0.871 49 H 0.118 0.882 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -9.721 -14.770 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.370 5.370 3 C 0.344 3.656 4 O -0.435 6.435 5 C -0.217 4.217 6 C 0.361 3.639 7 O -0.441 6.441 8 N -0.336 5.336 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.086 4.086 12 C -0.001 4.001 13 C -0.127 4.127 14 C -0.161 4.161 15 C 0.013 3.987 16 N -0.327 5.327 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.239 4.239 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.204 1.204 25 C 0.075 3.925 26 C -0.140 4.140 27 C -0.165 4.165 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.248 0.752 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.009 0.991 47 H 0.135 0.865 48 H 0.147 0.853 49 H 0.137 0.863 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.852 -9.455 -14.945 20.244 hybrid contribution 0.629 0.882 0.616 1.246 sum -9.223 -8.573 -14.329 19.076 Atomic orbital electron populations 1.21763 0.77619 1.04531 1.01998 1.45771 1.08908 1.08262 1.74019 1.19104 0.86915 0.84077 0.75462 1.90718 1.69901 1.32560 1.50367 1.21390 0.92792 1.08900 0.98647 1.18966 0.80274 0.83617 0.81081 1.90684 1.46356 1.25226 1.81855 1.48841 1.45619 1.31384 1.07713 1.22634 0.95437 0.88190 0.95535 1.22493 0.96965 1.00108 0.94243 1.21621 0.96106 0.97005 0.93902 1.22015 0.94704 0.99473 0.83886 1.21363 0.99482 0.95094 0.96796 1.21904 0.98129 0.99576 0.96446 1.21077 0.94859 0.88981 0.93777 1.44246 1.63712 1.01875 1.22870 1.19410 1.03581 0.85837 1.29736 0.91667 1.25619 0.94541 1.01675 1.02032 1.70156 1.04744 1.32783 1.50174 0.85521 0.76793 0.81171 0.78087 1.20391 1.22305 1.20423 1.20447 0.89888 0.96432 0.85723 1.23205 1.02919 0.98714 0.89202 1.23161 1.01796 0.91237 1.00343 0.93065 0.91922 0.87154 0.75205 0.91853 0.89597 0.90687 0.90843 0.92559 0.90149 0.92463 0.91261 0.92316 0.90062 0.92958 0.97072 0.94271 0.92251 0.99118 0.86543 0.85297 0.86329 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.71 127.77 1.37 2.56 16 2 N -0.72 -13.43 5.71 -484.52 -2.76 -16.20 16 3 C 0.56 13.77 5.87 87.66 0.51 14.29 16 4 O -0.56 -17.00 15.62 -3.05 -0.05 -17.05 16 5 C -0.21 -5.07 1.65 -53.67 -0.09 -5.16 16 6 C 0.57 16.97 7.12 87.66 0.62 17.59 16 7 O -0.56 -18.99 17.07 -3.03 -0.05 -19.04 16 8 N -0.60 -18.98 3.30 -809.66 -2.67 -21.65 16 9 C 0.10 3.39 6.89 86.76 0.60 3.98 16 10 C -0.10 -3.39 5.00 31.69 0.16 -3.23 16 11 C -0.08 -2.96 0.63 -51.90 -0.03 -2.99 16 12 C 0.12 4.10 6.30 86.35 0.54 4.65 16 13 C -0.09 -2.74 4.34 30.47 0.13 -2.61 16 14 C -0.12 -3.77 5.89 30.70 0.18 -3.59 16 15 C 0.14 5.48 6.50 86.36 0.56 6.04 16 16 N -0.60 -28.88 2.51 -699.98 -1.76 -30.64 16 17 C -0.26 -13.52 9.59 84.03 0.81 -12.72 16 18 H 0.07 3.39 7.88 -2.91 -0.02 3.36 16 19 C -0.04 -2.34 4.94 84.86 0.42 -1.92 16 20 N -0.93 -53.80 11.12 21.65 0.24 -53.56 16 21 Si 0.96 44.14 29.58 68.60 2.03 46.17 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.20 9.22 3.65 86.14 0.31 9.53 16 26 C -0.10 -1.84 9.77 30.62 0.30 -1.55 16 27 C -0.13 -2.70 9.75 30.62 0.30 -2.40 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.41 6.63 8.83 -92.71 -0.82 5.81 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 2.71 5.44 -2.39 -0.01 2.70 16 34 H 0.07 2.29 7.63 -2.39 -0.02 2.27 16 35 H 0.07 2.94 7.48 -2.39 -0.02 2.92 16 36 H 0.06 2.06 7.67 -2.39 -0.02 2.04 16 37 H 0.08 2.58 7.55 -2.39 -0.02 2.56 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.06 1.85 7.13 -2.39 -0.02 1.83 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 2.04 7.93 -2.38 -0.02 2.02 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 45 H 0.06 3.11 6.02 -2.39 -0.01 3.10 16 46 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.12 2.08 8.03 -2.38 -0.02 2.06 16 48 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.12 2.44 7.89 -2.38 -0.02 2.42 16 50 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.41 392.15 1.80 -65.62 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.12 Total: 23.87 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 6.70 Total: 22.48 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -6.95 Total: -122.04 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.10 Total: -36.09 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.41 1.80 -65.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671040213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.273 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds