Wall clock time and date at job start Tue Mar 31 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 H 1.08999 * 109.63887 * 54.57769 * 6 5 3 8 8 C 1.53025 * 109.64099 * 293.94470 * 6 5 3 9 9 C 1.50068 * 110.14688 * 190.87777 * 8 6 5 10 10 C 1.29449 * 124.07540 * 17.12953 * 9 8 6 11 11 C 1.50069 * 124.07398 * 359.53083 * 10 9 8 12 12 C 1.53031 * 110.14710 * 17.13246 * 11 10 9 13 13 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 14 14 C 1.53940 * 113.73448 * 38.76634 * 13 2 1 15 15 N 1.48184 * 86.10298 * 221.96178 * 14 13 2 16 16 C 1.46897 * 111.07253 * 137.52194 * 15 14 13 17 17 C 1.50702 * 109.47254 * 70.56548 * 16 15 14 18 18 O 1.21291 * 119.99810 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99887 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99715 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99788 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99759 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00162 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99798 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47013 * 90.00030 * 24 22 20 26 26 H 1.48502 * 109.47089 * 209.99891 * 24 22 20 27 27 H 1.48503 * 109.47377 * 330.00258 * 24 22 20 28 28 C 1.47957 * 90.80094 * 24.59736 * 15 14 13 29 29 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 30 30 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 34 34 H 1.08999 * 109.35357 * 311.08393 * 8 6 5 35 35 H 1.09003 * 109.36012 * 70.67048 * 8 6 5 36 36 H 1.07993 * 117.96116 * 197.11000 * 9 8 6 37 37 H 1.07992 * 117.95896 * 179.50887 * 10 9 8 38 38 H 1.08992 * 109.35829 * 256.92378 * 11 10 9 39 39 H 1.08997 * 109.24570 * 137.26596 * 11 10 9 40 40 H 1.08998 * 109.64078 * 190.87904 * 12 11 10 41 41 H 1.08997 * 109.81923 * 70.35146 * 12 11 10 42 42 H 1.08995 * 112.94409 * 170.33588 * 13 2 1 43 43 H 1.09002 * 113.75482 * 336.24273 * 14 13 2 44 44 H 1.09002 * 113.75539 * 107.60117 * 14 13 2 45 45 H 1.08996 * 109.47419 * 190.56278 * 16 15 14 46 46 H 1.08996 * 109.47105 * 310.56291 * 16 15 14 47 47 H 0.96998 * 120.00688 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00059 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.76108 * 221.08582 * 28 15 14 50 50 H 1.09002 * 113.75794 * 89.72717 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 1 3.0700 3.5229 -0.8480 8 6 3.1585 3.6525 1.3051 9 6 3.9402 4.9277 1.4267 10 6 3.7126 5.9881 0.7200 11 6 2.6417 6.0871 -0.3267 12 6 1.6209 4.9617 -0.1444 13 6 2.1975 -1.2687 0.0006 14 6 1.5557 -2.3551 -0.8813 15 7 1.8637 -3.2920 0.2246 16 6 0.7406 -4.2064 0.4704 17 6 0.6271 -5.1814 -0.6731 18 8 1.4051 -5.1203 -1.6017 19 7 -0.3393 -6.1207 -0.6645 20 6 -0.4428 -7.0074 -1.7050 21 1 0.2499 -6.9529 -2.5318 22 6 -1.4390 -7.9761 -1.6958 23 7 -2.2815 -8.0427 -0.6896 24 14 -1.5804 -9.1837 -3.1139 25 1 -0.7553 -10.3844 -2.8258 26 1 -2.9998 -9.5870 -3.2810 27 1 -1.0984 -8.5400 -4.3624 28 6 1.8623 -2.1771 1.1973 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7588 2.5257 -0.8967 33 1 0.7587 2.5344 0.8833 34 1 2.4603 3.5757 2.1386 35 1 3.8435 2.8050 1.3310 36 1 4.7423 4.9630 2.1489 37 1 4.3316 6.8556 0.8948 38 1 3.0942 6.0078 -1.3151 39 1 2.1384 7.0496 -0.2358 40 1 0.9612 4.9215 -1.0112 41 1 1.0325 5.1387 0.7559 42 1 3.2668 -1.1420 -0.1680 43 1 0.4886 -2.2101 -1.0498 44 1 2.1084 -2.5593 -1.7983 45 1 0.9129 -4.7526 1.3977 46 1 -0.1831 -3.6336 0.5524 47 1 -0.9617 -6.1694 0.0779 48 1 -2.9771 -8.7187 -0.6834 49 1 2.6595 -2.2395 1.9380 50 1 0.8851 -1.9801 1.6381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671157635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:34 Heat of formation + Delta-G solvation = -25.230194 kcal Electronic energy + Delta-G solvation = -28701.719257 eV Core-core repulsion = 24730.004554 eV Total energy + Delta-G solvation = -3971.714703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84029 -39.63147 -38.34351 -37.60632 -35.07841 -33.90980 -33.07102 -31.31687 -31.02280 -30.10111 -27.74195 -27.18529 -26.03304 -25.33478 -23.78424 -23.31235 -21.69960 -20.01820 -19.29201 -18.92468 -18.27147 -17.92790 -17.29091 -16.51985 -16.21060 -16.18147 -15.84276 -15.29079 -14.87381 -14.62002 -14.44067 -13.99525 -13.95524 -13.87015 -13.44890 -13.30736 -13.10781 -12.97542 -12.81188 -12.68614 -12.55799 -12.37463 -12.29012 -12.02813 -11.95106 -11.72836 -11.52491 -11.11201 -11.02280 -10.97808 -10.82510 -10.59785 -10.42243 -10.41178 -10.23828 -9.81057 -9.52838 -9.20255 -8.76435 -8.71348 -8.27420 -7.98992 -6.44252 -3.85064 2.06616 2.46349 2.75440 3.16159 3.24977 3.30737 3.86284 4.00681 4.18348 4.26043 4.33563 4.43874 4.53039 4.65437 4.76695 4.82765 4.87466 4.96092 4.99150 5.06741 5.11875 5.18608 5.21513 5.28537 5.30219 5.37776 5.39617 5.43281 5.46841 5.51845 5.57311 5.64775 5.67720 5.73082 5.77329 5.88949 5.95159 6.01896 6.13537 6.17040 6.23115 6.36377 6.42123 6.56654 6.73300 7.11525 7.23996 7.52895 8.02799 8.03353 8.58616 9.15506 9.51188 10.02907 10.73457 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.001804 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.188061 B =15516.289577 C =15739.278179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.514 3.486 4 O -0.535 6.535 5 C -0.136 4.136 6 C -0.072 4.072 7 H 0.081 0.919 8 C -0.092 4.092 9 C -0.145 4.145 10 C -0.167 4.167 11 C -0.089 4.089 12 C -0.116 4.116 13 C 0.113 3.887 14 C 0.013 3.987 15 N -0.449 5.449 16 C 0.014 3.986 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.013 4.013 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 26.237 6.213 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.303 3.697 4 O -0.412 6.412 5 C -0.176 4.176 6 C -0.090 4.090 7 H 0.100 0.900 8 C -0.129 4.129 9 C -0.163 4.163 10 C -0.185 4.185 11 C -0.126 4.126 12 C -0.154 4.154 13 C 0.009 3.991 14 C -0.116 4.116 15 N -0.172 5.172 16 C -0.118 4.118 17 C 0.228 3.772 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.143 4.143 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.105 25.685 5.567 26.600 hybrid contribution -1.519 -0.419 0.049 1.576 sum 2.586 25.265 5.616 26.011 Atomic orbital electron populations 1.21828 0.79583 1.03283 1.02373 1.47971 1.06896 1.05953 1.73273 1.20744 0.88150 0.85301 0.75531 1.90674 1.13951 1.87246 1.49312 1.21825 0.99289 0.92179 1.04299 1.20977 0.96299 0.92422 0.99350 0.90037 1.20630 0.98964 0.96771 0.96533 1.22100 0.99668 0.94925 0.99639 1.22009 0.99670 0.98193 0.98670 1.20413 0.95335 0.98711 0.98122 1.21675 0.97517 0.94184 1.01979 1.23229 0.98901 0.80791 0.96158 1.24283 1.00161 0.89589 0.97592 1.68390 1.37245 1.08537 1.03002 1.22437 0.92980 0.96513 0.99890 1.19668 0.84316 0.84608 0.88616 1.90531 1.43983 1.74230 1.37396 1.41865 1.28144 1.28190 1.21892 1.19702 1.14136 1.08512 1.00499 0.87924 1.25258 0.95790 0.98542 0.98334 1.69608 1.18115 1.35690 1.30925 0.85857 0.77289 0.80193 0.80949 1.20364 1.20931 1.19434 1.24494 1.01769 0.91298 0.96778 0.92039 0.90874 0.90735 0.88747 0.88886 0.91481 0.89079 0.88209 0.88305 0.90958 0.91234 0.91577 0.91695 0.85395 0.91139 0.88217 0.89010 0.92984 0.77521 0.91873 0.88868 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 8.83 59.84 0.53 1.08 16 2 N -0.61 -6.44 3.09 -175.28 -0.54 -6.99 16 3 C 0.51 5.68 7.44 -10.98 -0.08 5.60 16 4 O -0.54 -7.78 13.57 5.55 0.08 -7.70 16 5 C -0.14 -1.01 3.73 -27.88 -0.10 -1.11 16 6 C -0.07 -0.59 1.87 -90.40 -0.17 -0.76 16 7 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 8 C -0.09 -0.83 5.05 -28.18 -0.14 -0.97 16 9 C -0.15 -1.24 9.80 -35.90 -0.35 -1.59 16 10 C -0.17 -1.30 9.80 -35.90 -0.35 -1.65 16 11 C -0.09 -0.59 6.12 -28.17 -0.17 -0.76 16 12 C -0.12 -0.74 5.31 -26.51 -0.14 -0.88 16 13 C 0.11 1.47 4.39 -69.62 -0.31 1.16 16 14 C 0.01 0.20 6.22 -2.63 -0.02 0.19 16 15 N -0.45 -7.46 5.95 -239.67 -1.42 -8.89 16 16 C 0.01 0.24 5.31 -4.98 -0.03 0.22 16 17 C 0.44 10.39 7.59 -10.99 -0.08 10.31 16 18 O -0.58 -15.64 15.13 5.55 0.08 -15.56 16 19 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.01 -0.17 7.49 -2.76 -0.02 -0.19 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16 31 H 0.07 0.38 6.45 -51.93 -0.33 0.05 16 32 H 0.09 0.56 8.11 -51.92 -0.42 0.14 16 33 H 0.09 0.53 7.36 -51.93 -0.38 0.14 16 34 H 0.07 0.54 8.06 -51.93 -0.42 0.13 16 35 H 0.09 1.03 6.30 -51.93 -0.33 0.70 16 36 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 42 H 0.13 1.88 7.22 -51.93 -0.37 1.50 16 43 H 0.07 1.03 6.48 -51.93 -0.34 0.70 16 44 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.05 0.79 7.70 -51.93 -0.40 0.39 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.07 0.76 6.49 -51.93 -0.34 0.43 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -32.90 394.08 -10.04 -42.94 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.13 Total: 9.42 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.68 Total: 2.70 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -1.30 Total: -53.67 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.26 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.90 -10.04 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671157635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.710 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds