Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 H 1.08999 * 109.63887 * 54.57769 * 6 5 3 8 8 C 1.53025 * 109.64099 * 293.94470 * 6 5 3 9 9 C 1.50068 * 110.14688 * 190.87777 * 8 6 5 10 10 C 1.29449 * 124.07540 * 17.12953 * 9 8 6 11 11 C 1.50069 * 124.07398 * 359.53083 * 10 9 8 12 12 C 1.53031 * 110.14710 * 17.13246 * 11 10 9 13 13 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 14 14 C 1.53940 * 113.73448 * 38.76634 * 13 2 1 15 15 N 1.48184 * 86.10298 * 221.96178 * 14 13 2 16 16 C 1.46897 * 111.07253 * 137.52194 * 15 14 13 17 17 C 1.50702 * 109.47254 * 70.56548 * 16 15 14 18 18 O 1.21291 * 119.99810 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99887 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99715 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99788 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99759 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00162 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99798 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47013 * 90.00030 * 24 22 20 26 26 H 1.48502 * 109.47089 * 209.99891 * 24 22 20 27 27 H 1.48503 * 109.47377 * 330.00258 * 24 22 20 28 28 C 1.47957 * 90.80094 * 24.59736 * 15 14 13 29 29 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 30 30 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 34 34 H 1.08999 * 109.35357 * 311.08393 * 8 6 5 35 35 H 1.09003 * 109.36012 * 70.67048 * 8 6 5 36 36 H 1.07993 * 117.96116 * 197.11000 * 9 8 6 37 37 H 1.07992 * 117.95896 * 179.50887 * 10 9 8 38 38 H 1.08992 * 109.35829 * 256.92378 * 11 10 9 39 39 H 1.08997 * 109.24570 * 137.26596 * 11 10 9 40 40 H 1.08998 * 109.64078 * 190.87904 * 12 11 10 41 41 H 1.08997 * 109.81923 * 70.35146 * 12 11 10 42 42 H 1.08995 * 112.94409 * 170.33588 * 13 2 1 43 43 H 1.09002 * 113.75482 * 336.24273 * 14 13 2 44 44 H 1.09002 * 113.75539 * 107.60117 * 14 13 2 45 45 H 1.08996 * 109.47419 * 190.56278 * 16 15 14 46 46 H 1.08996 * 109.47105 * 310.56291 * 16 15 14 47 47 H 0.96998 * 120.00688 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00059 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.76108 * 221.08582 * 28 15 14 50 50 H 1.09002 * 113.75794 * 89.72717 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 1 3.0700 3.5229 -0.8480 8 6 3.1585 3.6525 1.3051 9 6 3.9402 4.9277 1.4267 10 6 3.7126 5.9881 0.7200 11 6 2.6417 6.0871 -0.3267 12 6 1.6209 4.9617 -0.1444 13 6 2.1975 -1.2687 0.0006 14 6 1.5557 -2.3551 -0.8813 15 7 1.8637 -3.2920 0.2246 16 6 0.7406 -4.2064 0.4704 17 6 0.6271 -5.1814 -0.6731 18 8 1.4051 -5.1203 -1.6017 19 7 -0.3393 -6.1207 -0.6645 20 6 -0.4428 -7.0074 -1.7050 21 1 0.2499 -6.9529 -2.5318 22 6 -1.4390 -7.9761 -1.6958 23 7 -2.2815 -8.0427 -0.6896 24 14 -1.5804 -9.1837 -3.1139 25 1 -0.7553 -10.3844 -2.8258 26 1 -2.9998 -9.5870 -3.2810 27 1 -1.0984 -8.5400 -4.3624 28 6 1.8623 -2.1771 1.1973 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7588 2.5257 -0.8967 33 1 0.7587 2.5344 0.8833 34 1 2.4603 3.5757 2.1386 35 1 3.8435 2.8050 1.3310 36 1 4.7423 4.9630 2.1489 37 1 4.3316 6.8556 0.8948 38 1 3.0942 6.0078 -1.3151 39 1 2.1384 7.0496 -0.2358 40 1 0.9612 4.9215 -1.0112 41 1 1.0325 5.1387 0.7559 42 1 3.2668 -1.1420 -0.1680 43 1 0.4886 -2.2101 -1.0498 44 1 2.1084 -2.5593 -1.7983 45 1 0.9129 -4.7526 1.3977 46 1 -0.1831 -3.6336 0.5524 47 1 -0.9617 -6.1694 0.0779 48 1 -2.9771 -8.7187 -0.6834 49 1 2.6595 -2.2395 1.9380 50 1 0.8851 -1.9801 1.6381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671157635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = -48.333365 kcal Electronic energy + Delta-G solvation = -28702.721086 eV Core-core repulsion = 24730.004554 eV Total energy + Delta-G solvation = -3972.716532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86191 -40.66541 -39.61043 -38.82274 -36.13414 -35.80593 -33.73689 -33.30687 -31.59910 -31.39697 -28.52809 -28.00217 -27.23641 -26.92454 -25.05767 -24.02615 -22.46943 -21.16793 -20.80785 -19.99010 -19.78659 -18.88267 -18.21494 -17.84106 -17.47237 -16.91116 -16.80290 -16.55046 -16.37147 -15.94277 -15.62464 -15.42867 -15.05694 -14.90095 -14.39871 -14.31506 -13.99236 -13.85563 -13.73041 -13.56158 -13.51114 -13.43217 -13.27296 -13.17716 -13.01613 -12.89171 -12.83873 -12.45539 -12.43166 -12.14345 -12.13282 -11.79421 -11.60756 -11.51308 -11.43973 -10.99208 -10.66033 -10.35496 -10.02571 -9.82871 -9.76223 -9.64204 -8.47698 -5.96205 1.36955 1.41227 1.44596 1.53440 1.63378 1.90862 2.03643 2.28511 2.83142 3.18780 3.24134 3.47140 3.60692 3.74154 3.75383 3.86504 4.06967 4.12053 4.19557 4.23635 4.28216 4.37617 4.40496 4.42926 4.50919 4.51872 4.56214 4.62847 4.71401 4.76247 4.78951 4.80119 4.84791 4.93055 4.96526 5.01786 5.07617 5.13735 5.26767 5.31189 5.39700 5.40346 5.46837 5.54026 5.81894 5.85324 6.04380 6.11741 6.41775 6.59294 7.11971 7.20199 7.54761 8.10968 8.69539 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.001804 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.188061 B =15516.289577 C =15739.278179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.507 3.493 4 O -0.579 6.579 5 C -0.127 4.127 6 C -0.070 4.070 7 H 0.054 0.946 8 C -0.089 4.089 9 C -0.166 4.166 10 C -0.164 4.164 11 C -0.094 4.094 12 C -0.110 4.110 13 C 0.125 3.875 14 C 0.014 3.986 15 N -0.481 5.481 16 C 0.028 3.972 17 C 0.439 3.561 18 O -0.620 6.620 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.274 1.274 28 C 0.003 3.997 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.100 0.900 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 27.759 7.198 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.338 5.338 3 C 0.298 3.702 4 O -0.459 6.459 5 C -0.166 4.166 6 C -0.089 4.089 7 H 0.073 0.927 8 C -0.126 4.126 9 C -0.184 4.184 10 C -0.182 4.182 11 C -0.130 4.130 12 C -0.148 4.148 13 C 0.020 3.980 14 C -0.116 4.116 15 N -0.204 5.204 16 C -0.104 4.104 17 C 0.226 3.774 18 O -0.506 6.506 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.199 1.199 28 C -0.127 4.127 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.128 0.872 46 H 0.102 0.898 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.687 27.220 6.583 28.056 hybrid contribution -0.710 -0.846 -0.265 1.135 sum 0.977 26.375 6.318 27.138 Atomic orbital electron populations 1.22107 0.77292 1.05073 1.03245 1.48030 1.08192 1.04814 1.72812 1.21485 0.87871 0.86439 0.74417 1.90669 1.16111 1.87861 1.51225 1.21867 0.98946 0.89196 1.06603 1.20930 0.96239 0.94067 0.97713 0.92744 1.20552 0.98753 0.95772 0.97535 1.22173 1.00337 0.95277 1.00657 1.22252 0.99761 0.98082 0.98155 1.20503 0.95248 0.99784 0.97511 1.21658 0.97362 0.92544 1.03188 1.22786 0.97739 0.81827 0.95672 1.24192 1.00379 0.90599 0.96437 1.68354 1.37306 1.10040 1.04732 1.22331 0.94924 0.95750 0.97409 1.20749 0.82674 0.84488 0.89453 1.90506 1.45262 1.75282 1.39593 1.41914 1.28917 1.28499 1.21599 1.19632 1.14918 1.10581 1.01202 0.90562 1.25995 0.94960 0.99476 1.00638 1.69659 1.18188 1.36162 1.31883 0.84957 0.77905 0.77907 0.77739 1.19819 1.19331 1.19920 1.24497 1.03466 0.88723 0.95965 0.91670 0.90675 0.87376 0.86523 0.86065 0.90476 0.92113 0.88338 0.87465 0.91112 0.89562 0.89984 0.90642 0.87866 0.90123 0.91741 0.87191 0.89791 0.76907 0.91260 0.88202 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 8.83 127.77 1.13 1.90 16 2 N -0.61 -11.90 3.09 -826.84 -2.56 -14.46 16 3 C 0.51 10.74 7.44 87.66 0.65 11.39 16 4 O -0.58 -17.42 13.57 -3.04 -0.04 -17.47 16 5 C -0.13 -1.54 3.73 29.85 0.11 -1.43 16 6 C -0.07 -1.07 1.87 -10.65 -0.02 -1.09 16 7 H 0.05 1.12 7.93 -2.39 -0.02 1.10 16 8 C -0.09 -1.58 5.05 29.66 0.15 -1.43 16 9 C -0.17 -2.82 9.80 27.03 0.27 -2.55 16 10 C -0.16 -2.37 9.80 27.03 0.27 -2.11 16 11 C -0.09 -1.06 6.12 29.66 0.18 -0.88 16 12 C -0.11 -1.11 5.31 30.73 0.16 -0.95 16 13 C 0.13 3.22 4.39 46.56 0.20 3.42 16 14 C 0.01 0.42 6.22 86.37 0.54 0.96 16 15 N -0.48 -15.72 5.95 -912.18 -5.42 -21.15 16 16 C 0.03 0.92 5.31 85.56 0.45 1.38 16 17 C 0.44 20.81 7.59 87.66 0.67 21.48 16 18 O -0.62 -34.77 15.13 -3.06 -0.05 -34.82 16 19 N -0.57 -29.01 5.29 -306.98 -1.62 -30.63 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 23 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 C 0.00 0.06 7.49 86.41 0.65 0.71 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.90 6.35 -2.39 -0.02 0.89 16 31 H 0.11 0.58 6.45 -2.39 -0.02 0.57 16 32 H 0.12 0.95 8.11 -2.38 -0.02 0.93 16 33 H 0.12 0.84 7.36 -2.39 -0.02 0.82 16 34 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 35 H 0.06 1.45 6.30 -2.39 -0.02 1.44 16 36 H 0.10 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.11 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 42 H 0.10 3.20 7.22 -2.39 -0.02 3.18 16 43 H 0.08 2.30 6.48 -2.39 -0.02 2.29 16 44 H 0.06 2.43 8.10 -2.39 -0.02 2.41 16 45 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.08 2.29 7.70 -2.39 -0.02 2.27 16 47 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 49 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.10 1.76 6.49 -2.39 -0.02 1.75 16 Total: -1.00 -74.91 394.08 -0.49 -75.40 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.21 Total: 34.22 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.69 Total: 12.63 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -9.32 Total: -114.75 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.09 Total: -52.28 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.91 -0.49 -75.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671157635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.068 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds