Wall clock time and date at job start Tue Mar 31 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 H 1.09007 * 109.64041 * 305.00130 * 6 5 3 8 8 C 1.53028 * 109.64383 * 65.41882 * 6 5 3 9 9 C 1.50162 * 110.09750 * 168.90467 * 8 6 5 10 10 C 1.29442 * 124.14541 * 343.28610 * 9 8 6 11 11 C 1.50061 * 124.07879 * 0.23648 * 10 9 8 12 12 C 1.53024 * 110.14846 * 342.87088 * 11 10 9 13 13 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 14 14 C 1.53933 * 113.73449 * 38.76248 * 13 2 1 15 15 N 1.48181 * 86.10495 * 221.96093 * 14 13 2 16 16 C 1.46903 * 111.07326 * 137.51926 * 15 14 13 17 17 C 1.50703 * 109.47273 * 70.56733 * 16 15 14 18 18 O 1.21298 * 119.99364 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00350 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00043 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00275 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99764 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99867 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00144 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46920 * 90.00101 * 24 22 20 26 26 H 1.48501 * 109.47139 * 210.00159 * 24 22 20 27 27 H 1.48502 * 109.47066 * 330.00341 * 24 22 20 28 28 C 1.47955 * 90.79878 * 24.59879 * 15 14 13 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 1.09004 * 109.35394 * 289.33276 * 8 6 5 35 35 H 1.09000 * 109.35875 * 48.91168 * 8 6 5 36 36 H 1.07995 * 117.89014 * 163.02705 * 9 8 6 37 37 H 1.08005 * 117.95888 * 180.25717 * 10 9 8 38 38 H 1.09000 * 109.36240 * 222.66396 * 11 10 9 39 39 H 1.09008 * 109.24876 * 103.00672 * 11 10 9 40 40 H 1.08996 * 109.64288 * 289.75531 * 12 11 10 41 41 H 1.09001 * 109.81901 * 169.22068 * 12 11 10 42 42 H 1.09002 * 112.94156 * 170.33228 * 13 2 1 43 43 H 1.09008 * 113.76072 * 336.24291 * 14 13 2 44 44 H 1.09000 * 113.76254 * 107.60477 * 14 13 2 45 45 H 1.09003 * 109.47016 * 190.56816 * 16 15 14 46 46 H 1.08994 * 109.47218 * 310.56912 * 16 15 14 47 47 H 0.96998 * 119.99596 * 0.02562 * 19 17 16 48 48 H 0.97004 * 120.00051 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.76354 * 221.08505 * 28 15 14 50 50 H 1.09002 * 113.76127 * 89.72283 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 1 3.0652 3.5307 0.8420 8 6 3.1695 3.6373 -1.3095 9 6 3.9480 4.9146 -1.4407 10 6 3.7164 5.9813 -0.7451 11 6 2.6398 6.0900 0.2946 12 6 1.6200 4.9629 0.1170 13 6 2.1975 -1.2687 -0.0006 14 6 1.5557 -2.3543 -0.8833 15 7 1.8638 -3.2922 0.2218 16 6 0.7406 -4.2068 0.4668 17 6 0.6271 -5.1809 -0.6775 18 8 1.4057 -5.1194 -1.6056 19 7 -0.3387 -6.1208 -0.6692 20 6 -0.4416 -7.0072 -1.7099 21 1 0.2510 -6.9521 -2.5367 22 6 -1.4377 -7.9760 -1.7015 23 7 -1.5366 -8.8253 -2.6994 24 14 -2.6361 -8.0710 -0.2718 25 1 -3.8158 -7.2155 -0.5571 26 1 -3.0771 -9.4771 -0.0882 27 1 -1.9681 -7.5960 0.9665 28 6 1.8624 -2.1781 1.1954 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.8546 2.7895 -1.3197 35 1 2.4785 3.5508 -2.1480 36 1 4.7547 4.9431 -2.1581 37 1 4.3365 6.8473 -0.9244 38 1 2.1365 7.0516 0.1945 39 1 3.0885 6.0184 1.2854 40 1 1.0397 5.1334 -0.7898 41 1 0.9527 4.9293 0.9782 42 1 3.2669 -1.1417 -0.1691 43 1 0.4886 -2.2093 -1.0517 44 1 2.1083 -2.5578 -1.8005 45 1 0.9131 -4.7538 1.3938 46 1 -0.1830 -3.6341 0.5493 47 1 -0.9610 -6.1701 0.0732 48 1 -2.2318 -9.5018 -2.6934 49 1 2.6596 -2.2411 1.9361 50 1 0.8852 -1.9814 1.6364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671157636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:37 Heat of formation + Delta-G solvation = -17.756697 kcal Electronic energy + Delta-G solvation = -28770.041817 eV Core-core repulsion = 24798.651189 eV Total energy + Delta-G solvation = -3971.390628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90172 -39.69527 -38.41157 -37.75334 -35.13721 -33.96560 -33.09377 -31.72599 -31.03162 -30.27462 -27.78829 -27.25930 -26.10525 -25.40308 -23.72366 -23.27146 -21.70166 -20.04337 -19.43152 -19.03738 -18.37533 -18.25362 -17.33773 -16.59232 -16.23265 -16.18730 -15.93625 -15.32432 -15.00000 -14.77641 -14.52718 -14.11647 -14.01771 -13.66557 -13.42033 -13.33112 -13.10390 -12.93724 -12.92433 -12.72748 -12.58996 -12.46423 -12.37369 -12.23204 -12.13797 -11.95545 -11.77900 -11.24113 -11.07608 -11.00449 -10.87090 -10.67588 -10.62704 -10.43113 -10.00287 -9.84583 -9.59912 -9.20685 -8.81881 -8.81123 -8.40863 -8.20835 -6.33711 -3.85304 2.06556 2.42449 2.70415 2.99521 3.02922 3.12117 3.69055 3.93644 4.07150 4.21570 4.31270 4.38821 4.43379 4.60241 4.67904 4.73926 4.82317 4.83459 4.95765 5.06419 5.09974 5.14167 5.14836 5.22025 5.27493 5.33119 5.35169 5.38170 5.41817 5.47874 5.51337 5.55099 5.61381 5.66450 5.66673 5.84555 5.88314 5.92193 6.00836 6.11481 6.12853 6.30376 6.41502 6.45897 6.73304 7.00797 7.18415 7.54750 7.99042 8.11049 8.56746 8.92214 9.39168 9.79485 10.79368 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.001892 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.779520 B =14792.687189 C =14976.207972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.514 3.486 4 O -0.534 6.534 5 C -0.136 4.136 6 C -0.071 4.071 7 H 0.080 0.920 8 C -0.094 4.094 9 C -0.144 4.144 10 C -0.169 4.169 11 C -0.088 4.088 12 C -0.116 4.116 13 C 0.114 3.886 14 C 0.012 3.988 15 N -0.449 5.449 16 C 0.011 3.989 17 C 0.451 3.549 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.013 4.013 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 28.339 10.055 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.303 3.697 4 O -0.411 6.411 5 C -0.176 4.176 6 C -0.090 4.090 7 H 0.099 0.901 8 C -0.130 4.130 9 C -0.162 4.162 10 C -0.187 4.187 11 C -0.125 4.125 12 C -0.153 4.153 13 C 0.010 3.990 14 C -0.118 4.118 15 N -0.171 5.171 16 C -0.121 4.121 17 C 0.237 3.763 18 O -0.440 6.440 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.143 4.143 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.071 0.929 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.683 27.731 9.260 29.359 hybrid contribution -2.038 -0.005 1.148 2.339 sum 0.645 27.726 10.408 29.622 Atomic orbital electron populations 1.21827 0.79615 1.03227 1.02394 1.47965 1.06874 1.05945 1.73357 1.20750 0.88156 0.85292 0.75508 1.90675 1.13948 1.87225 1.49222 1.21825 0.99303 0.92172 1.04292 1.20973 0.96204 0.92403 0.99434 0.90124 1.20668 0.99025 0.96776 0.96563 1.22123 0.99643 0.94879 0.99570 1.21995 0.99686 0.98178 0.98807 1.20405 0.95287 0.98686 0.98154 1.21673 0.97510 0.94167 1.01996 1.23215 0.98978 0.80808 0.96022 1.24312 1.00247 0.89562 0.97643 1.68400 1.36979 1.08612 1.03150 1.22479 0.93282 0.96612 0.99751 1.19569 0.83913 0.84191 0.88645 1.90575 1.43007 1.73416 1.37025 1.42207 1.29186 1.30158 1.21489 1.19425 1.15623 1.08158 1.00142 0.86281 1.25041 0.97722 0.96077 0.97327 1.69622 1.33714 1.18111 1.30601 0.86672 0.81771 0.78787 0.82155 1.19682 1.20128 1.19513 1.24502 1.01801 0.91220 0.96818 0.92004 0.90963 0.90716 0.88800 0.88831 0.88942 0.91416 0.88178 0.88289 0.91225 0.91035 0.91666 0.91614 0.85308 0.91072 0.88042 0.88873 0.92875 0.79761 0.91596 0.88775 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 8.83 59.84 0.53 1.04 16 2 N -0.61 -6.12 3.09 -175.28 -0.54 -6.66 16 3 C 0.51 5.47 7.43 -10.98 -0.08 5.39 16 4 O -0.53 -7.56 13.53 5.56 0.08 -7.48 16 5 C -0.14 -0.96 3.73 -27.88 -0.10 -1.06 16 6 C -0.07 -0.57 1.87 -90.40 -0.17 -0.73 16 7 H 0.08 0.78 7.94 -51.92 -0.41 0.36 16 8 C -0.09 -0.86 5.06 -28.13 -0.14 -1.00 16 9 C -0.14 -1.25 9.80 -35.85 -0.35 -1.60 16 10 C -0.17 -1.30 9.80 -35.90 -0.35 -1.65 16 11 C -0.09 -0.57 6.12 -28.18 -0.17 -0.74 16 12 C -0.12 -0.71 5.31 -26.51 -0.14 -0.85 16 13 C 0.11 1.41 4.39 -69.63 -0.31 1.10 16 14 C 0.01 0.17 6.22 -2.64 -0.02 0.16 16 15 N -0.45 -7.09 5.95 -239.68 -1.42 -8.52 16 16 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 17 C 0.45 10.14 7.59 -10.99 -0.08 10.06 16 18 O -0.56 -14.91 15.13 5.54 0.08 -14.83 16 19 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 20 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.56 13.96 55.50 0.77 -24.78 16 24 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 28 C -0.01 -0.16 7.49 -2.76 -0.02 -0.18 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.51 6.35 -51.93 -0.33 0.18 16 31 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 32 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.09 0.48 7.40 -51.93 -0.38 0.09 16 34 H 0.09 1.06 6.25 -51.93 -0.32 0.74 16 35 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 40 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.13 1.82 7.22 -51.93 -0.37 1.45 16 43 H 0.07 0.98 6.48 -51.92 -0.34 0.65 16 44 H 0.10 1.73 8.10 -51.93 -0.42 1.31 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.05 0.72 7.70 -51.93 -0.40 0.32 16 47 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.70 6.49 -51.93 -0.34 0.36 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -34.20 390.91 -9.69 -43.88 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.09 Total: 9.69 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.69 Total: 2.40 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -1.25 Total: -53.91 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.20 -9.69 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671157636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.126 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds