Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 H 1.09007 * 109.64041 * 305.00130 * 6 5 3 8 8 C 1.53028 * 109.64383 * 65.41882 * 6 5 3 9 9 C 1.50162 * 110.09750 * 168.90467 * 8 6 5 10 10 C 1.29442 * 124.14541 * 343.28610 * 9 8 6 11 11 C 1.50061 * 124.07879 * 0.23648 * 10 9 8 12 12 C 1.53024 * 110.14846 * 342.87088 * 11 10 9 13 13 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 14 14 C 1.53933 * 113.73449 * 38.76248 * 13 2 1 15 15 N 1.48181 * 86.10495 * 221.96093 * 14 13 2 16 16 C 1.46903 * 111.07326 * 137.51926 * 15 14 13 17 17 C 1.50703 * 109.47273 * 70.56733 * 16 15 14 18 18 O 1.21298 * 119.99364 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00350 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00043 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00275 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99764 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99867 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00144 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46920 * 90.00101 * 24 22 20 26 26 H 1.48501 * 109.47139 * 210.00159 * 24 22 20 27 27 H 1.48502 * 109.47066 * 330.00341 * 24 22 20 28 28 C 1.47955 * 90.79878 * 24.59879 * 15 14 13 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 1.09004 * 109.35394 * 289.33276 * 8 6 5 35 35 H 1.09000 * 109.35875 * 48.91168 * 8 6 5 36 36 H 1.07995 * 117.89014 * 163.02705 * 9 8 6 37 37 H 1.08005 * 117.95888 * 180.25717 * 10 9 8 38 38 H 1.09000 * 109.36240 * 222.66396 * 11 10 9 39 39 H 1.09008 * 109.24876 * 103.00672 * 11 10 9 40 40 H 1.08996 * 109.64288 * 289.75531 * 12 11 10 41 41 H 1.09001 * 109.81901 * 169.22068 * 12 11 10 42 42 H 1.09002 * 112.94156 * 170.33228 * 13 2 1 43 43 H 1.09008 * 113.76072 * 336.24291 * 14 13 2 44 44 H 1.09000 * 113.76254 * 107.60477 * 14 13 2 45 45 H 1.09003 * 109.47016 * 190.56816 * 16 15 14 46 46 H 1.08994 * 109.47218 * 310.56912 * 16 15 14 47 47 H 0.96998 * 119.99596 * 0.02562 * 19 17 16 48 48 H 0.97004 * 120.00051 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.76354 * 221.08505 * 28 15 14 50 50 H 1.09002 * 113.76127 * 89.72283 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 1 3.0652 3.5307 0.8420 8 6 3.1695 3.6373 -1.3095 9 6 3.9480 4.9146 -1.4407 10 6 3.7164 5.9813 -0.7451 11 6 2.6398 6.0900 0.2946 12 6 1.6200 4.9629 0.1170 13 6 2.1975 -1.2687 -0.0006 14 6 1.5557 -2.3543 -0.8833 15 7 1.8638 -3.2922 0.2218 16 6 0.7406 -4.2068 0.4668 17 6 0.6271 -5.1809 -0.6775 18 8 1.4057 -5.1194 -1.6056 19 7 -0.3387 -6.1208 -0.6692 20 6 -0.4416 -7.0072 -1.7099 21 1 0.2510 -6.9521 -2.5367 22 6 -1.4377 -7.9760 -1.7015 23 7 -1.5366 -8.8253 -2.6994 24 14 -2.6361 -8.0710 -0.2718 25 1 -3.8158 -7.2155 -0.5571 26 1 -3.0771 -9.4771 -0.0882 27 1 -1.9681 -7.5960 0.9665 28 6 1.8624 -2.1781 1.1954 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.8546 2.7895 -1.3197 35 1 2.4785 3.5508 -2.1480 36 1 4.7547 4.9431 -2.1581 37 1 4.3365 6.8473 -0.9244 38 1 2.1365 7.0516 0.1945 39 1 3.0885 6.0184 1.2854 40 1 1.0397 5.1334 -0.7898 41 1 0.9527 4.9293 0.9782 42 1 3.2669 -1.1417 -0.1691 43 1 0.4886 -2.2093 -1.0517 44 1 2.1083 -2.5578 -1.8005 45 1 0.9131 -4.7538 1.3938 46 1 -0.1830 -3.6341 0.5493 47 1 -0.9610 -6.1701 0.0732 48 1 -2.2318 -9.5018 -2.6934 49 1 2.6596 -2.2411 1.9361 50 1 0.8852 -1.9814 1.6364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671157636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = -43.553492 kcal Electronic energy + Delta-G solvation = -28771.160450 eV Core-core repulsion = 24798.651189 eV Total energy + Delta-G solvation = -3972.509261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87369 -40.70723 -39.71007 -38.83477 -36.15210 -35.83323 -33.80133 -33.70809 -31.61587 -31.47895 -28.56907 -28.01231 -27.23508 -26.90540 -24.94029 -24.02078 -22.44735 -21.31270 -20.89988 -20.29382 -19.81909 -18.87631 -18.21183 -17.83134 -17.48028 -16.97232 -16.83983 -16.67206 -16.40349 -15.86004 -15.59719 -15.23918 -15.08800 -14.84962 -14.54656 -14.33231 -14.16585 -14.00938 -13.85403 -13.69385 -13.55746 -13.45867 -13.27132 -13.21283 -12.99273 -12.91182 -12.87077 -12.45227 -12.42113 -12.12976 -11.98395 -11.80144 -11.60592 -11.50784 -11.45690 -10.99394 -10.65272 -10.43813 -10.25741 -9.84204 -9.76823 -9.63466 -8.41506 -6.02987 1.30417 1.35750 1.43194 1.45349 1.63872 1.91181 1.94534 2.23292 2.68855 3.09751 3.14601 3.46753 3.60021 3.73873 3.75054 3.84741 4.05193 4.10821 4.13957 4.21697 4.27708 4.33899 4.38014 4.42297 4.47345 4.50115 4.59581 4.60262 4.70769 4.77476 4.78971 4.79199 4.84701 4.93058 4.98247 5.01258 5.07957 5.14023 5.25662 5.30253 5.39097 5.46420 5.53218 5.54624 5.80534 5.87945 5.98264 6.10617 6.42180 6.58678 6.87521 7.20952 7.38458 7.95978 8.76196 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.001892 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.779520 B =14792.687189 C =14976.207972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.507 3.493 4 O -0.580 6.580 5 C -0.127 4.127 6 C -0.069 4.069 7 H 0.059 0.941 8 C -0.092 4.092 9 C -0.169 4.169 10 C -0.162 4.162 11 C -0.093 4.093 12 C -0.110 4.110 13 C 0.123 3.877 14 C 0.011 3.989 15 N -0.484 5.484 16 C 0.024 3.976 17 C 0.449 3.551 18 O -0.612 6.612 19 N -0.589 5.589 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.100 0.900 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 30.781 14.166 33.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.339 5.339 3 C 0.297 3.703 4 O -0.459 6.459 5 C -0.166 4.166 6 C -0.088 4.088 7 H 0.078 0.922 8 C -0.129 4.129 9 C -0.187 4.187 10 C -0.180 4.180 11 C -0.130 4.130 12 C -0.147 4.147 13 C 0.018 3.982 14 C -0.118 4.118 15 N -0.208 5.208 16 C -0.108 4.108 17 C 0.237 3.763 18 O -0.496 6.496 19 N -0.231 5.231 20 C -0.458 4.458 21 H 0.070 0.930 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.154 1.154 28 C -0.124 4.124 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.139 0.861 46 H 0.113 0.887 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.827 30.202 13.393 33.049 hybrid contribution -0.797 -0.726 -0.277 1.113 sum -1.624 29.475 13.117 32.303 Atomic orbital electron populations 1.22127 0.77193 1.05266 1.03215 1.48029 1.08248 1.04759 1.72814 1.21494 0.87867 0.86493 0.74429 1.90670 1.16178 1.87865 1.51212 1.21866 0.98930 0.89182 1.06624 1.20927 0.96197 0.94155 0.97523 0.92221 1.20588 0.98737 0.95769 0.97796 1.22165 1.00388 0.95350 1.00775 1.22265 0.99738 0.97865 0.98151 1.20508 0.95083 0.99773 0.97614 1.21659 0.97382 0.92461 1.03225 1.22788 0.97674 0.81874 0.95868 1.24219 1.00541 0.90699 0.96390 1.68358 1.37461 1.10181 1.04756 1.22443 0.95493 0.95709 0.97134 1.20876 0.82043 0.83993 0.89436 1.90563 1.44698 1.74632 1.39674 1.42009 1.30287 1.29813 1.21024 1.18977 1.15625 1.10725 1.00500 0.92992 1.26162 0.99635 0.94529 1.01169 1.69814 1.35024 1.19091 1.33628 0.85336 0.78544 0.79086 0.78351 1.17785 1.20211 1.15358 1.24498 1.03724 0.88367 0.95776 0.91856 0.90258 0.87351 0.86888 0.85619 0.92232 0.91153 0.88666 0.87449 0.89527 0.90733 0.91109 0.89429 0.88133 0.89765 0.92145 0.86139 0.88674 0.77396 0.91146 0.88163 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 8.83 127.77 1.13 1.77 16 2 N -0.61 -11.05 3.09 -826.86 -2.56 -13.61 16 3 C 0.51 10.25 7.43 87.66 0.65 10.90 16 4 O -0.58 -17.06 13.53 -3.03 -0.04 -17.10 16 5 C -0.13 -1.43 3.73 29.85 0.11 -1.31 16 6 C -0.07 -1.00 1.87 -10.65 -0.02 -1.02 16 7 H 0.06 1.12 7.94 -2.38 -0.02 1.10 16 8 C -0.09 -1.73 5.06 29.69 0.15 -1.58 16 9 C -0.17 -2.99 9.80 27.07 0.27 -2.73 16 10 C -0.16 -2.35 9.80 27.04 0.27 -2.08 16 11 C -0.09 -0.97 6.12 29.66 0.18 -0.79 16 12 C -0.11 -1.02 5.31 30.74 0.16 -0.86 16 13 C 0.12 2.99 4.39 46.56 0.20 3.20 16 14 C 0.01 0.33 6.22 86.37 0.54 0.87 16 15 N -0.48 -14.68 5.95 -912.22 -5.42 -20.10 16 16 C 0.02 0.70 5.31 85.56 0.45 1.15 16 17 C 0.45 20.10 7.59 87.66 0.67 20.76 16 18 O -0.61 -34.29 15.13 -3.09 -0.05 -34.34 16 19 N -0.59 -27.33 5.09 -306.99 -1.56 -28.89 16 20 C -0.33 -19.21 10.16 84.04 0.85 -18.35 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 23 N -0.94 -56.22 13.96 21.66 0.30 -55.92 16 24 Si 0.97 37.83 27.74 68.60 1.90 39.74 16 25 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 26 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 28 C 0.01 0.11 7.49 86.41 0.65 0.76 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.72 6.35 -2.38 -0.02 0.70 16 31 H 0.11 0.38 6.44 -2.39 -0.02 0.37 16 32 H 0.11 0.90 8.07 -2.39 -0.02 0.88 16 33 H 0.13 0.65 7.40 -2.39 -0.02 0.63 16 34 H 0.06 1.51 6.25 -2.39 -0.01 1.50 16 35 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 36 H 0.10 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.11 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.61 8.13 -2.39 -0.02 0.59 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.10 3.03 7.22 -2.39 -0.02 3.01 16 43 H 0.08 2.22 6.48 -2.38 -0.02 2.20 16 44 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 45 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.10 2.05 7.70 -2.39 -0.02 2.03 16 47 H 0.39 14.68 5.76 -92.71 -0.53 14.15 16 48 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.10 1.49 6.49 -2.39 -0.02 1.47 16 Total: -1.00 -84.59 390.91 -0.35 -84.94 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.35 Total: 35.03 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.73 Total: 10.25 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -9.24 Total: -118.52 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.74 kcal Total: -84.59 -0.35 -84.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671157636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.387 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds