Wall clock time and date at job start Tue Mar 31 2020 18:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46982 * 110.55064 * 3 2 1 5 5 C 1.34780 * 119.99833 * 269.99666 * 4 3 2 6 6 O 1.21278 * 119.99983 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99729 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46705 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47131 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47399 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99689 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00354 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00417 * 179.97438 * 12 10 9 14 14 C 1.46498 * 120.00008 * 89.99993 * 4 3 2 15 15 C 1.53071 * 109.44009 * 299.79262 * 14 4 3 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 4 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 59.99907 * 14 4 3 28 28 H 4.40641 * 5.51496 * 180.02562 * 4 1 2 29 29 H 1.08994 * 109.46925 * 350.55065 * 3 2 1 30 30 H 1.09006 * 109.46830 * 230.54617 * 3 2 1 31 31 H 1.08999 * 109.46898 * 299.99422 * 7 5 4 32 32 H 1.08997 * 109.47139 * 59.99923 * 7 5 4 33 33 H 1.09007 * 109.47100 * 299.99721 * 8 7 5 34 34 H 1.09000 * 109.47553 * 59.99600 * 8 7 5 35 35 H 1.09007 * 109.46916 * 299.99853 * 9 8 7 36 36 H 1.09000 * 109.47212 * 59.99411 * 9 8 7 37 37 H 0.96999 * 119.99572 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46688 * 300.00230 * 13 12 10 39 39 H 1.09001 * 109.46611 * 59.99882 * 13 12 10 40 40 H 1.08994 * 109.47322 * 179.97438 * 13 12 10 41 41 H 1.08998 * 109.45866 * 179.97438 * 14 4 3 42 42 H 1.09002 * 109.39343 * 61.36176 * 15 14 4 43 43 H 1.09003 * 109.62467 * 301.25403 * 15 14 4 44 44 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 45 45 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 48 48 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 49 49 H 1.09002 * 109.49555 * 58.67538 * 27 14 4 50 50 H 1.08992 * 109.52043 * 298.59539 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4857 -1.2933 5 6 3.3592 -0.3841 -2.2980 6 8 3.7636 0.0174 -3.3685 7 6 3.1081 -1.8556 -2.0909 8 6 3.4394 -2.6152 -3.3770 9 6 3.1853 -4.1093 -3.1668 10 6 3.5122 -4.8576 -4.4333 11 8 3.9089 -4.2552 -5.4083 12 7 3.3627 -6.1961 -4.4829 13 6 3.6799 -6.9236 -5.7143 14 6 3.3776 1.9162 -1.4946 15 6 2.0741 2.6899 -1.2814 16 6 2.3255 4.1817 -1.5230 17 7 3.4377 4.6210 -0.6693 18 6 3.2922 5.6940 0.1689 19 1 3.8724 5.7516 1.0780 20 6 2.3991 6.7076 -0.1498 21 7 1.9443 6.8214 -1.3797 22 14 1.8424 7.9101 1.1668 23 1 3.0221 8.6296 1.7109 24 1 0.8950 8.8886 0.5749 25 1 1.1670 7.1680 2.2615 26 6 4.7092 3.8874 -0.7326 27 6 4.4323 2.3994 -0.4964 28 1 -1.0501 0.0001 0.0002 29 1 3.0097 -1.0129 0.1687 30 1 3.0090 0.6539 0.7936 31 1 3.7383 -2.2211 -1.2801 32 1 2.0602 -2.0131 -1.8361 33 1 2.8090 -2.2496 -4.1877 34 1 4.4873 -2.4578 -3.6324 35 1 3.8160 -4.4746 -2.3562 36 1 2.1375 -4.2671 -2.9111 37 1 3.0450 -6.6778 -3.7032 38 1 3.0495 -6.5580 -6.5249 39 1 4.7278 -6.7660 -5.9695 40 1 3.4989 -7.9879 -5.5644 41 1 3.7351 2.0843 -2.5105 42 1 1.7275 2.5402 -0.2588 43 1 1.3171 2.3310 -1.9787 44 1 1.4282 4.7483 -1.2744 45 1 2.5820 4.3441 -2.5698 46 1 1.3204 7.5299 -1.6025 47 1 5.1612 4.0236 -1.7150 48 1 5.3857 4.2618 0.0359 49 1 5.3522 1.8315 -0.6358 50 1 4.0656 2.2543 0.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671469307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:39 Heat of formation + Delta-G solvation = -2.155838 kcal Electronic energy + Delta-G solvation = -29086.551757 eV Core-core repulsion = 25115.837633 eV Total energy + Delta-G solvation = -3970.714124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.24423 -39.81509 -37.52361 -35.61572 -35.01493 -34.42882 -33.05533 -32.08546 -30.39021 -29.76788 -29.06791 -27.13564 -26.68751 -24.94702 -22.91420 -22.17076 -21.52558 -20.62938 -19.57800 -19.20172 -18.01595 -17.49853 -16.95219 -16.72000 -16.39222 -16.09669 -15.79215 -15.50077 -14.79887 -14.53191 -14.17558 -13.85198 -13.74732 -13.56012 -13.48198 -13.19270 -13.06730 -12.89543 -12.74207 -12.61081 -12.48886 -12.07346 -12.05952 -11.61559 -11.45958 -11.17298 -10.95890 -10.93665 -10.71215 -10.51646 -10.41081 -10.19929 -10.14024 -10.13014 -10.02966 -9.74786 -9.63901 -9.50815 -9.40973 -8.57803 -8.36569 -6.66185 -5.76918 -3.19813 2.36097 2.50053 2.78334 2.84267 2.86376 3.38777 3.44655 3.44958 3.45898 4.36888 4.37353 4.49270 4.50735 4.74235 4.79706 4.82449 5.02823 5.10390 5.16505 5.21118 5.29002 5.33317 5.36424 5.41674 5.43192 5.52119 5.54369 5.66064 5.88119 5.93311 5.96978 5.98946 6.11407 6.23573 6.27368 6.35679 6.50973 6.62278 6.66215 6.80217 6.91721 6.98005 7.08764 7.38088 7.53137 7.62790 7.69417 7.80673 7.91590 8.33057 8.46812 9.22634 9.86058 10.43251 11.31703 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.002162 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.515402 B =12949.032837 C =13363.240600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.203 4.203 3 C 0.216 3.784 4 N -0.604 5.604 5 C 0.513 3.487 6 O -0.533 6.533 7 C -0.141 4.141 8 C -0.090 4.090 9 C -0.140 4.140 10 C 0.509 3.491 11 O -0.531 6.531 12 N -0.742 5.742 13 C 0.086 3.914 14 C 0.144 3.856 15 C -0.141 4.141 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.215 0.785 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.401 0.599 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.254 0.746 47 H 0.020 0.980 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -28.111 1.755 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.093 3.907 4 N -0.336 5.336 5 C 0.301 3.699 6 O -0.410 6.410 7 C -0.181 4.181 8 C -0.128 4.128 9 C -0.180 4.180 10 C 0.295 3.705 11 O -0.407 6.407 12 N -0.394 5.394 13 C -0.058 4.058 14 C 0.042 3.958 15 C -0.181 4.181 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.020 3.980 27 C -0.178 4.178 28 H 0.232 0.768 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.235 0.765 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.091 -27.294 0.359 27.296 hybrid contribution -0.899 0.308 1.144 1.487 sum -0.808 -26.986 1.504 27.040 Atomic orbital electron populations 1.24912 0.95911 1.00778 0.98962 1.23539 0.94914 1.00545 1.01442 1.18380 0.83806 1.01106 0.87360 1.48307 1.64881 1.08482 1.11903 1.20635 0.77206 0.88372 0.83724 1.90724 1.45350 1.79737 1.25146 1.21738 1.03677 0.92543 1.00148 1.21084 1.04340 0.90715 0.96673 1.21700 1.03737 0.96818 0.95741 1.20844 0.77194 0.82036 0.90414 1.90759 1.44729 1.67692 1.37470 1.45866 1.69549 1.07746 1.16262 1.21525 1.01436 0.95767 0.87065 1.21237 0.96615 0.76809 1.01102 1.22536 0.95177 0.99526 1.00889 1.20756 0.93316 0.88214 0.92992 1.44070 1.06849 1.32679 1.47818 1.19120 1.22782 0.96989 0.99395 0.91721 1.25061 1.01820 0.97015 0.95733 1.70024 1.34593 1.33581 1.16397 0.86374 0.78442 0.80655 0.81308 1.20874 1.21661 1.21091 1.20861 0.89545 0.88933 0.98612 1.22379 0.97310 0.99365 0.98770 0.76808 0.88497 0.87594 0.88950 0.88966 0.90343 0.90295 0.88748 0.88763 0.76539 0.92245 0.92252 0.90767 0.88540 0.92411 0.93307 0.89278 0.96233 0.93552 0.96189 0.92435 0.92759 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 19.25 29.55 0.57 -1.59 16 2 C -0.20 -2.50 11.92 -37.12 -0.44 -2.95 16 3 C 0.22 2.44 5.16 -6.83 -0.04 2.40 16 4 N -0.60 -8.78 2.37 -169.35 -0.40 -9.18 16 5 C 0.51 7.61 7.67 -10.98 -0.08 7.53 16 6 O -0.53 -10.31 15.31 5.56 0.09 -10.23 16 7 C -0.14 -1.37 4.25 -27.88 -0.12 -1.49 16 8 C -0.09 -0.96 3.79 -26.73 -0.10 -1.06 16 9 C -0.14 -0.95 5.70 -27.88 -0.16 -1.11 16 10 C 0.51 4.86 7.83 -10.99 -0.09 4.77 16 11 O -0.53 -7.81 15.98 5.56 0.09 -7.72 16 12 N -0.74 -4.49 5.71 -67.08 -0.38 -4.87 16 13 C 0.09 0.49 10.70 59.85 0.64 1.13 16 14 C 0.14 2.59 2.48 -67.87 -0.17 2.42 16 15 C -0.14 -2.81 4.75 -26.59 -0.13 -2.93 16 16 C 0.17 4.24 5.30 -3.71 -0.02 4.22 16 17 N -0.59 -14.87 3.00 -172.31 -0.52 -15.38 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.45 11.20 55.49 0.62 -25.83 16 22 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 27 C -0.14 -2.39 5.31 -26.61 -0.14 -2.53 16 28 H 0.22 1.81 7.80 -54.09 -0.42 1.39 16 29 H 0.10 0.74 6.44 -51.93 -0.33 0.40 16 30 H 0.11 1.20 6.46 -51.93 -0.34 0.87 16 31 H 0.09 0.63 7.40 -51.93 -0.38 0.25 16 32 H 0.09 0.77 7.95 -51.93 -0.41 0.36 16 33 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 42 H 0.06 1.15 7.01 -51.93 -0.36 0.78 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -36.62 404.69 -8.20 -44.82 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.24 Total: 0.81 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.53 Total: 4.80 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.68 Total: -55.26 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.62 -8.20 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671469307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.661 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds