Wall clock time and date at job start Tue Mar 31 2020 18:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46982 * 110.55064 * 3 2 1 5 5 C 1.34780 * 119.99833 * 269.99666 * 4 3 2 6 6 O 1.21278 * 119.99983 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99729 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46705 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47131 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47399 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99689 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00354 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00417 * 179.97438 * 12 10 9 14 14 C 1.46498 * 120.00008 * 89.99993 * 4 3 2 15 15 C 1.53071 * 109.44009 * 299.79262 * 14 4 3 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 4 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 59.99907 * 14 4 3 28 28 H 4.40641 * 5.51496 * 180.02562 * 4 1 2 29 29 H 1.08994 * 109.46925 * 350.55065 * 3 2 1 30 30 H 1.09006 * 109.46830 * 230.54617 * 3 2 1 31 31 H 1.08999 * 109.46898 * 299.99422 * 7 5 4 32 32 H 1.08997 * 109.47139 * 59.99923 * 7 5 4 33 33 H 1.09007 * 109.47100 * 299.99721 * 8 7 5 34 34 H 1.09000 * 109.47553 * 59.99600 * 8 7 5 35 35 H 1.09007 * 109.46916 * 299.99853 * 9 8 7 36 36 H 1.09000 * 109.47212 * 59.99411 * 9 8 7 37 37 H 0.96999 * 119.99572 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46688 * 300.00230 * 13 12 10 39 39 H 1.09001 * 109.46611 * 59.99882 * 13 12 10 40 40 H 1.08994 * 109.47322 * 179.97438 * 13 12 10 41 41 H 1.08998 * 109.45866 * 179.97438 * 14 4 3 42 42 H 1.09002 * 109.39343 * 61.36176 * 15 14 4 43 43 H 1.09003 * 109.62467 * 301.25403 * 15 14 4 44 44 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 45 45 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 48 48 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 49 49 H 1.09002 * 109.49555 * 58.67538 * 27 14 4 50 50 H 1.08992 * 109.52043 * 298.59539 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4857 -1.2933 5 6 3.3592 -0.3841 -2.2980 6 8 3.7636 0.0174 -3.3685 7 6 3.1081 -1.8556 -2.0909 8 6 3.4394 -2.6152 -3.3770 9 6 3.1853 -4.1093 -3.1668 10 6 3.5122 -4.8576 -4.4333 11 8 3.9089 -4.2552 -5.4083 12 7 3.3627 -6.1961 -4.4829 13 6 3.6799 -6.9236 -5.7143 14 6 3.3776 1.9162 -1.4946 15 6 2.0741 2.6899 -1.2814 16 6 2.3255 4.1817 -1.5230 17 7 3.4377 4.6210 -0.6693 18 6 3.2922 5.6940 0.1689 19 1 3.8724 5.7516 1.0780 20 6 2.3991 6.7076 -0.1498 21 7 1.9443 6.8214 -1.3797 22 14 1.8424 7.9101 1.1668 23 1 3.0221 8.6296 1.7109 24 1 0.8950 8.8886 0.5749 25 1 1.1670 7.1680 2.2615 26 6 4.7092 3.8874 -0.7326 27 6 4.4323 2.3994 -0.4964 28 1 -1.0501 0.0001 0.0002 29 1 3.0097 -1.0129 0.1687 30 1 3.0090 0.6539 0.7936 31 1 3.7383 -2.2211 -1.2801 32 1 2.0602 -2.0131 -1.8361 33 1 2.8090 -2.2496 -4.1877 34 1 4.4873 -2.4578 -3.6324 35 1 3.8160 -4.4746 -2.3562 36 1 2.1375 -4.2671 -2.9111 37 1 3.0450 -6.6778 -3.7032 38 1 3.0495 -6.5580 -6.5249 39 1 4.7278 -6.7660 -5.9695 40 1 3.4989 -7.9879 -5.5644 41 1 3.7351 2.0843 -2.5105 42 1 1.7275 2.5402 -0.2588 43 1 1.3171 2.3310 -1.9787 44 1 1.4282 4.7483 -1.2744 45 1 2.5820 4.3441 -2.5698 46 1 1.3204 7.5299 -1.6025 47 1 5.1612 4.0236 -1.7150 48 1 5.3857 4.2618 0.0359 49 1 5.3522 1.8315 -0.6358 50 1 4.0656 2.2543 0.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671469307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:38 Heat of formation + Delta-G solvation = -27.813510 kcal Electronic energy + Delta-G solvation = -29087.664357 eV Core-core repulsion = 25115.837633 eV Total energy + Delta-G solvation = -3971.826724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.38383 -40.62815 -39.08545 -37.00204 -35.67226 -35.32882 -34.54311 -33.40110 -32.04573 -31.41951 -30.01676 -28.14426 -27.52613 -26.58584 -24.18777 -23.89537 -22.82265 -21.30445 -20.83715 -20.63583 -19.06201 -18.63030 -18.25574 -17.93630 -17.20474 -17.08933 -16.77319 -16.66141 -16.36797 -15.64727 -15.41915 -15.32416 -15.01240 -14.81145 -14.57225 -14.46120 -14.32099 -14.18557 -13.98161 -13.78439 -13.27267 -13.16378 -13.05064 -12.82201 -12.78525 -12.64920 -12.55944 -12.42274 -12.21523 -12.04696 -11.93912 -11.72523 -11.55220 -11.37892 -11.27336 -11.10303 -10.95073 -10.66494 -10.56880 -10.11010 -9.78400 -8.72503 -7.87963 -5.34730 1.46799 1.47948 1.50274 1.56829 1.67642 1.69623 1.97857 2.28043 2.48138 2.51256 3.27718 3.54246 3.59104 3.64907 3.79244 3.91269 4.04715 4.07749 4.09546 4.26974 4.32595 4.41814 4.45122 4.48778 4.58481 4.62988 4.64289 4.65693 4.73870 4.79085 4.80372 4.85349 4.96004 5.03629 5.06602 5.10422 5.15953 5.18862 5.28361 5.37810 5.43738 5.50192 5.58203 5.62455 5.66773 6.37401 6.42256 6.60897 6.76680 7.12225 7.19517 7.33635 7.82653 8.36444 9.19148 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.002162 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.515402 B =12949.032837 C =13363.240600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.229 4.229 3 C 0.211 3.789 4 N -0.601 5.601 5 C 0.504 3.496 6 O -0.591 6.591 7 C -0.125 4.125 8 C -0.087 4.087 9 C -0.127 4.127 10 C 0.498 3.502 11 O -0.597 6.597 12 N -0.724 5.724 13 C 0.081 3.919 14 C 0.152 3.848 15 C -0.118 4.118 16 C 0.182 3.818 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.141 3.859 27 C -0.120 4.120 28 H 0.236 0.764 29 H 0.145 0.855 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.422 0.578 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.057 0.943 45 H -0.015 1.015 46 H 0.249 0.751 47 H 0.004 0.996 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -31.530 5.447 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.230 4.230 3 C 0.090 3.910 4 N -0.331 5.331 5 C 0.295 3.705 6 O -0.471 6.471 7 C -0.165 4.165 8 C -0.126 4.126 9 C -0.166 4.166 10 C 0.286 3.714 11 O -0.478 6.478 12 N -0.377 5.377 13 C -0.063 4.063 14 C 0.049 3.951 15 C -0.158 4.158 16 C 0.055 3.945 17 N -0.330 5.330 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.200 1.200 26 C 0.015 3.985 27 C -0.160 4.160 28 H 0.253 0.747 29 H 0.163 0.837 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.136 0.864 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.003 0.997 46 H 0.058 0.942 47 H 0.022 0.978 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.289 -30.804 4.131 31.081 hybrid contribution -0.771 1.333 -0.069 1.541 sum -1.060 -29.472 4.063 29.769 Atomic orbital electron populations 1.25637 0.96876 1.00137 0.97939 1.23882 0.95599 1.01262 1.02304 1.18782 0.83423 1.03673 0.85105 1.48235 1.64746 1.06599 1.13535 1.21673 0.75739 0.90511 0.82626 1.90713 1.47884 1.80954 1.27542 1.21769 1.06045 0.87950 1.00698 1.20958 1.01560 0.93892 0.96175 1.21679 1.06505 0.93242 0.95210 1.21469 0.76266 0.83044 0.90581 1.90741 1.47990 1.69184 1.39884 1.45767 1.67946 1.06836 1.17136 1.21625 1.00187 0.97833 0.86632 1.20789 0.95405 0.79405 0.99508 1.22201 0.96329 0.96339 1.00946 1.20488 0.92029 0.90955 0.91000 1.44312 1.08343 1.32861 1.47513 1.19525 1.22447 0.97323 0.99834 0.90868 1.25896 1.02334 0.99112 0.97607 1.70208 1.35442 1.34393 1.18484 0.85291 0.77902 0.78270 0.78683 1.19917 1.22398 1.20041 1.21035 0.88061 0.91261 0.98100 1.22165 0.98194 0.96400 0.99236 0.74718 0.83739 0.87305 0.84398 0.86439 0.94325 0.93394 0.84798 0.85510 0.74060 0.93894 0.93734 0.86901 0.92102 0.91656 0.93729 0.92416 0.99737 0.94176 0.97804 0.91455 0.90285 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.77 19.25 74.32 1.43 -2.34 16 2 C -0.23 -4.88 11.92 31.13 0.37 -4.51 16 3 C 0.21 3.90 5.16 84.57 0.44 4.33 16 4 N -0.60 -16.31 2.37 -808.09 -1.91 -18.22 16 5 C 0.50 14.39 7.67 87.66 0.67 15.06 16 6 O -0.59 -23.80 15.31 -3.02 -0.05 -23.84 16 7 C -0.13 -1.99 4.25 29.85 0.13 -1.86 16 8 C -0.09 -1.78 3.79 30.59 0.12 -1.67 16 9 C -0.13 -1.30 5.70 29.85 0.17 -1.13 16 10 C 0.50 8.95 7.83 87.66 0.69 9.63 16 11 O -0.60 -18.41 15.98 -3.04 -0.05 -18.46 16 12 N -0.72 -7.10 5.71 -484.53 -2.77 -9.87 16 13 C 0.08 0.82 10.70 127.77 1.37 2.19 16 14 C 0.15 5.47 2.48 45.03 0.11 5.58 16 15 C -0.12 -4.77 4.75 30.69 0.15 -4.62 16 16 C 0.18 9.33 5.30 86.37 0.46 9.79 16 17 N -0.61 -31.16 3.00 -699.07 -2.09 -33.26 16 18 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 19 H 0.07 3.85 7.88 -2.91 -0.02 3.82 16 20 C -0.05 -3.08 4.92 84.86 0.42 -2.67 16 21 N -0.94 -57.25 11.20 21.65 0.24 -57.01 16 22 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.14 5.99 6.52 86.36 0.56 6.56 16 27 C -0.12 -3.98 5.31 30.67 0.16 -3.82 16 28 H 0.24 3.27 7.80 -4.41 -0.03 3.23 16 29 H 0.15 1.28 6.44 -2.39 -0.02 1.27 16 30 H 0.11 2.00 6.46 -2.38 -0.02 1.99 16 31 H 0.14 1.01 7.40 -2.39 -0.02 0.99 16 32 H 0.12 1.38 7.95 -2.39 -0.02 1.36 16 33 H 0.04 1.08 8.06 -2.38 -0.02 1.06 16 34 H 0.05 1.26 8.06 -2.39 -0.02 1.25 16 35 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.42 0.53 8.83 -92.71 -0.82 -0.29 16 38 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.06 2.65 6.90 -2.39 -0.02 2.63 16 42 H 0.06 2.54 7.01 -2.39 -0.02 2.53 16 43 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 45 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.07 2.69 7.93 -2.38 -0.02 2.67 16 49 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.08 2.35 6.72 -2.39 -0.02 2.34 16 Total: -1.00 -88.84 404.69 3.55 -85.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.11 Total: 11.36 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 8.04 Total: 16.92 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -6.53 Total: -118.36 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.09 Total: -42.30 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -88.84 3.55 -85.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671469307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.470 kcal (2) G-P(sol) polarization free energy of solvation -88.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds