Wall clock time and date at job start Tue Mar 31 2020 18:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99969 * 2 1 4 4 O 1.21273 * 120.00079 * 4.96825 * 3 2 1 5 5 C 1.50704 * 119.99835 * 184.97148 * 3 2 1 6 6 C 1.50693 * 112.85061 * 306.38311 * 5 3 2 7 7 O 1.21279 * 120.00362 * 113.47401 * 6 5 3 8 8 N 1.34780 * 119.99724 * 293.46727 * 6 5 3 9 9 C 1.44786 * 120.18324 * 353.21919 * 8 6 5 10 10 C 1.50588 * 112.03199 * 264.74482 * 9 8 6 11 11 C 1.51321 * 113.42191 * 285.04654 * 10 9 8 12 12 H 1.08996 * 111.99730 * 185.91002 * 11 10 9 13 13 C 1.54719 * 106.48021 * 307.88035 * 11 10 9 14 14 C 1.54234 * 104.37758 * 89.11365 * 13 11 10 15 15 C 1.51130 * 105.27692 * 11.32112 * 14 13 11 16 16 H 1.09004 * 106.47402 * 122.81819 * 15 14 13 17 17 C 1.49825 * 120.17908 * 173.23689 * 8 6 5 18 18 N 1.48058 * 109.76459 * 8.26538 * 15 14 13 19 19 C 1.36937 * 127.84437 * 155.03459 * 18 15 14 20 20 H 1.08001 * 120.00623 * 171.12718 * 19 18 15 21 21 C 1.38813 * 119.99701 * 351.12541 * 19 18 15 22 22 N 1.31617 * 120.00304 * 5.58118 * 21 19 18 23 23 Si 1.86800 * 120.00139 * 185.57889 * 21 19 18 24 24 H 1.48498 * 109.47504 * 94.99105 * 23 21 19 25 25 H 1.48503 * 109.47404 * 214.99429 * 23 21 19 26 26 H 1.48506 * 109.46893 * 334.99136 * 23 21 19 27 27 C 1.53783 * 113.68903 * 77.65096 * 5 3 2 28 28 C 1.53779 * 87.08339 * 89.12662 * 27 5 3 29 29 C 1.53777 * 87.08097 * 25.42956 * 28 27 5 30 30 H 1.09001 * 109.47303 * 184.81361 * 1 2 3 31 31 H 1.08998 * 109.46953 * 304.81193 * 1 2 3 32 32 H 1.09004 * 109.46961 * 64.81447 * 1 2 3 33 33 H 0.97004 * 120.00023 * 179.97438 * 2 1 3 34 34 H 1.09003 * 108.93309 * 25.27812 * 9 8 6 35 35 H 1.09002 * 108.93475 * 143.86241 * 9 8 6 36 36 H 1.09000 * 108.47050 * 164.14360 * 10 9 8 37 37 H 1.08997 * 108.80825 * 46.18851 * 10 9 8 38 38 H 1.08997 * 110.44978 * 207.83358 * 13 11 10 39 39 H 1.09003 * 110.45325 * 330.38744 * 13 11 10 40 40 H 1.08995 * 110.28769 * 130.50753 * 14 13 11 41 41 H 1.08994 * 110.28008 * 252.61422 * 14 13 11 42 42 H 1.08991 * 109.54231 * 30.81304 * 17 8 6 43 43 H 1.08996 * 109.54515 * 270.53397 * 17 8 6 44 44 H 0.97000 * 120.00656 * 179.97438 * 22 21 19 45 45 H 1.09004 * 113.61193 * 203.67533 * 27 5 3 46 46 H 1.09002 * 113.61212 * 334.57329 * 27 5 3 47 47 H 1.09006 * 113.61352 * 270.88240 * 28 27 5 48 48 H 1.08997 * 113.61646 * 139.97958 * 28 27 5 49 49 H 1.08999 * 113.62074 * 220.02013 * 29 28 27 50 50 H 1.09000 * 113.61272 * 89.11565 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5359 2.2155 0.0910 5 6 3.6417 1.1696 -0.1131 6 6 4.3077 0.2992 0.9210 7 8 4.9064 -0.6987 0.5793 8 7 4.2382 0.6296 2.2259 9 6 3.6536 1.8920 2.6269 10 6 4.6960 2.9617 2.8190 11 6 5.4941 2.8016 4.0947 12 1 6.1686 3.6412 4.2623 13 6 4.4651 2.6671 5.2422 14 6 4.1851 1.1529 5.3300 15 6 5.2414 0.5019 4.4672 16 1 5.7754 -0.1993 5.1085 17 6 4.7660 -0.3072 3.2692 18 7 6.2356 1.5141 4.0437 19 6 7.5403 1.3099 3.6814 20 1 8.1157 2.1191 3.2565 21 6 8.1232 0.0629 3.8604 22 7 7.3938 -0.9513 4.2747 23 14 9.9431 -0.1758 3.5133 24 1 10.7114 -0.0285 4.7755 25 1 10.1664 -1.5330 2.9534 26 1 10.3983 0.8443 2.5347 27 6 4.1540 0.9293 -1.5430 28 6 4.0837 2.4528 -1.7401 29 6 4.2493 2.5785 -0.2164 30 1 -0.3634 -1.0240 0.0862 31 1 -0.3633 0.5867 0.8437 32 1 -0.3633 0.4373 -0.9300 33 1 1.9500 -0.8401 0.0004 34 1 2.9520 2.2169 1.8585 35 1 3.1107 1.7494 3.5613 36 1 4.1971 3.9306 2.8376 37 1 5.3818 2.9401 1.9721 38 1 4.8888 3.0309 6.1783 39 1 3.5514 3.2100 5.0002 40 1 4.2718 0.8117 6.3615 41 1 3.1925 0.9290 4.9392 42 1 5.6001 -0.8767 2.8595 43 1 3.9749 -0.9892 3.5806 44 1 7.8011 -1.8227 4.3994 45 1 5.1676 0.5303 -1.5823 46 1 3.4553 0.3752 -2.1698 47 1 3.1175 2.8018 -2.1045 48 1 4.9224 2.8591 -2.3054 49 1 3.6276 3.3558 0.2278 50 1 5.2889 2.6303 0.1070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671588877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:08 Heat of formation + Delta-G solvation = -17.616461 kcal Electronic energy + Delta-G solvation = -32789.928424 eV Core-core repulsion = 28818.543878 eV Total energy + Delta-G solvation = -3971.384547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.59518 -40.85035 -39.53608 -38.04799 -35.97597 -35.64815 -34.77010 -33.22906 -31.28852 -29.89577 -28.49756 -27.64448 -26.92602 -26.47889 -25.57170 -23.74038 -22.53585 -21.57999 -21.00162 -20.74530 -19.92766 -18.79675 -18.45087 -17.45743 -17.19110 -16.96344 -16.74601 -16.41700 -16.04475 -15.96713 -15.77879 -15.57510 -15.00805 -14.55104 -14.47660 -14.19129 -13.91833 -13.73550 -13.61865 -13.40330 -13.20447 -13.16201 -13.01427 -12.98160 -12.71071 -12.62896 -12.60181 -12.39058 -12.27746 -12.00893 -11.98748 -11.60950 -11.46096 -11.38930 -11.25485 -11.10289 -10.84591 -10.71445 -10.34618 -10.21224 -9.42460 -8.79221 -7.73263 -5.11523 1.30432 1.43626 1.44893 1.51727 1.56184 2.10840 2.14589 2.50165 3.34604 3.36798 3.42236 3.53202 3.62198 3.68985 3.74793 3.92073 4.10202 4.15540 4.26473 4.30964 4.43660 4.46077 4.54990 4.61181 4.61880 4.69251 4.73842 4.79068 4.82747 4.89209 4.90887 4.93617 4.98049 4.99298 5.09478 5.11651 5.25058 5.28130 5.31679 5.34318 5.36835 5.51456 5.58878 5.68134 5.86139 5.93375 6.28684 6.39301 6.64221 6.99738 7.14838 7.24343 7.82935 8.56808 9.28372 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.005094 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.452090 B = 5495.686368 C = 6120.846005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.555 3.445 4 O -0.546 6.546 5 C -0.137 4.137 6 C 0.519 3.481 7 O -0.583 6.583 8 N -0.583 5.583 9 C 0.102 3.898 10 C -0.143 4.143 11 C 0.139 3.861 12 H 0.061 0.939 13 C -0.119 4.119 14 C -0.115 4.115 15 C 0.137 3.863 16 H 0.071 0.929 17 C 0.138 3.862 18 N -0.597 5.597 19 C -0.213 4.213 20 H 0.072 0.928 21 C -0.056 4.056 22 N -0.933 5.933 23 Si 0.960 3.040 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.277 1.277 27 C -0.101 4.101 28 C -0.125 4.125 29 C -0.106 4.106 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.408 0.592 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.242 0.758 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 6.088 -6.742 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.376 5.376 3 C 0.340 3.660 4 O -0.425 6.425 5 C -0.143 4.143 6 C 0.307 3.693 7 O -0.464 6.464 8 N -0.313 5.313 9 C -0.021 4.021 10 C -0.184 4.184 11 C 0.033 3.967 12 H 0.080 0.920 13 C -0.157 4.157 14 C -0.153 4.153 15 C 0.030 3.970 16 H 0.089 0.911 17 C 0.015 3.985 18 N -0.320 5.320 19 C -0.342 4.342 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.203 1.203 27 C -0.139 4.139 28 C -0.162 4.162 29 C -0.144 4.144 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.242 0.758 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.179 6.158 -6.828 17.747 hybrid contribution 1.799 -1.227 -0.026 2.178 sum -13.380 4.931 -6.853 15.821 Atomic orbital electron populations 1.21776 0.77304 1.04376 1.02351 1.45850 1.09181 1.08263 1.74283 1.19307 0.87273 0.84164 0.75300 1.90667 1.69617 1.31883 1.50308 1.22401 0.93596 1.00404 0.97931 1.20418 0.80391 0.85151 0.83379 1.90655 1.44902 1.29934 1.80881 1.48481 1.57949 1.19481 1.05363 1.21139 0.95500 0.83172 1.02252 1.21830 0.98138 0.98820 0.99565 1.21432 0.92283 0.89129 0.93906 0.92046 1.22626 0.99226 0.95454 0.98440 1.21894 0.97941 0.96399 0.99114 1.20763 0.90137 0.92673 0.93472 0.91117 1.22532 0.96367 0.91170 0.88419 1.45110 1.06657 1.02002 1.78206 1.19127 0.86249 0.96122 1.32728 0.91008 1.25329 1.00794 0.96005 1.02818 1.69878 1.34028 1.00247 1.54158 0.85315 0.81969 0.76301 0.77319 1.21383 1.23057 1.20275 1.22770 1.02164 0.98477 0.90460 1.22840 1.03710 0.94464 0.95206 1.22928 1.00507 0.92571 0.98380 0.87677 0.92342 0.91705 0.75788 0.90074 0.89182 0.89104 0.93975 0.91830 0.88657 0.91657 0.90446 0.91827 0.93948 0.94783 0.89844 0.89354 0.88746 0.89004 0.88916 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.73 127.77 1.37 2.73 16 2 N -0.73 -16.41 5.65 -484.52 -2.74 -19.15 16 3 C 0.55 15.30 5.28 87.66 0.46 15.76 16 4 O -0.55 -16.58 14.92 -3.01 -0.04 -16.63 16 5 C -0.14 -4.14 0.58 -53.15 -0.03 -4.17 16 6 C 0.52 20.39 6.32 87.65 0.55 20.95 16 7 O -0.58 -27.69 15.81 -3.03 -0.05 -27.74 16 8 N -0.58 -22.71 2.85 -823.47 -2.35 -25.06 16 9 C 0.10 3.28 4.48 85.92 0.39 3.67 16 10 C -0.14 -4.63 4.30 29.26 0.13 -4.51 16 11 C 0.14 5.11 4.08 44.61 0.18 5.29 16 12 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.12 -3.55 6.02 31.60 0.19 -3.36 16 14 C -0.12 -3.88 5.81 30.40 0.18 -3.70 16 15 C 0.14 6.08 1.97 43.81 0.09 6.16 16 16 H 0.07 3.79 5.70 -2.38 -0.01 3.78 16 17 C 0.14 6.28 5.82 85.46 0.50 6.77 16 18 N -0.60 -28.37 2.69 -650.00 -1.75 -30.12 16 19 C -0.21 -11.62 10.38 84.03 0.87 -10.75 16 20 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 21 C -0.06 -3.16 5.49 84.86 0.47 -2.70 16 22 N -0.93 -54.30 8.68 21.65 0.19 -54.11 16 23 Si 0.96 46.91 29.56 68.60 2.03 48.94 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 C -0.10 -2.69 6.89 31.12 0.21 -2.47 16 28 C -0.13 -2.85 7.79 31.12 0.24 -2.61 16 29 C -0.11 -2.98 4.55 31.12 0.14 -2.83 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.41 9.17 8.55 -92.71 -0.79 8.37 16 34 H 0.08 2.48 3.58 -2.39 -0.01 2.47 16 35 H 0.09 2.69 3.94 -2.39 -0.01 2.68 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.55 5.93 -2.39 -0.01 1.54 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 2.21 7.37 -2.39 -0.02 2.20 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.08 2.27 6.16 -2.39 -0.01 2.26 16 42 H 0.06 3.60 5.93 -2.39 -0.01 3.59 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.08 2.57 7.73 -2.39 -0.02 2.55 16 46 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 47 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.09 2.52 6.68 -2.39 -0.02 2.50 16 50 H 0.08 2.49 6.71 -2.39 -0.02 2.47 16 Total: -1.00 -70.43 365.88 1.40 -69.02 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.18 Total: 30.61 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 5.94 Total: 24.24 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.65 Total: -128.45 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.09 Total: -44.36 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -70.43 1.40 -69.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671588877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.408 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds