Wall clock time and date at job start Tue Mar 31 2020 18:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 120.00088 * 2 1 4 4 O 1.21282 * 120.00001 * 355.51593 * 3 2 1 5 5 C 1.50697 * 119.99762 * 175.51292 * 3 2 1 6 6 C 1.50702 * 112.85438 * 305.14443 * 5 3 2 7 7 O 1.21272 * 119.99806 * 118.93724 * 6 5 3 8 8 N 1.34768 * 119.99863 * 298.94419 * 6 5 3 9 9 C 1.45739 * 117.76123 * 355.79419 * 8 6 5 10 10 C 1.53049 * 109.55860 * 218.90045 * 9 8 6 11 11 C 1.52939 * 108.49026 * 306.19301 * 10 9 8 12 12 C 1.52918 * 109.79298 * 66.00195 * 11 10 9 13 13 H 1.08991 * 111.26731 * 66.63720 * 12 11 10 14 14 C 1.44196 * 117.75856 * 175.81893 * 8 6 5 15 15 H 1.08996 * 108.69137 * 27.02732 * 14 8 6 16 16 C 1.54230 * 111.74862 * 266.47611 * 14 8 6 17 17 C 1.54053 * 103.66697 * 206.72530 * 16 14 8 18 18 N 1.46881 * 107.76147 * 17.16771 * 17 16 14 19 19 C 1.36945 * 125.57987 * 182.94914 * 18 17 16 20 20 H 1.08000 * 119.99687 * 179.97438 * 19 18 17 21 21 C 1.38806 * 119.99965 * 359.97438 * 19 18 17 22 22 N 1.31619 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46892 * 90.00103 * 23 21 19 25 25 H 1.48502 * 109.47123 * 209.99799 * 23 21 19 26 26 H 1.48492 * 109.46928 * 330.00378 * 23 21 19 27 27 C 1.53781 * 113.68931 * 76.41890 * 5 3 2 28 28 C 1.53778 * 87.08299 * 89.12273 * 27 5 3 29 29 C 1.53780 * 87.08133 * 25.43387 * 28 27 5 30 30 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46703 * 299.99629 * 1 2 3 32 32 H 1.09002 * 109.47418 * 59.99158 * 1 2 3 33 33 H 0.96995 * 120.00000 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.45537 * 338.93314 * 9 8 6 35 35 H 1.09006 * 109.45138 * 98.89207 * 9 8 6 36 36 H 1.08997 * 109.63280 * 65.89389 * 10 9 8 37 37 H 1.09000 * 109.62812 * 186.29112 * 10 9 8 38 38 H 1.08996 * 109.41687 * 305.89549 * 11 10 9 39 39 H 1.08998 * 109.41585 * 186.09894 * 11 10 9 40 40 H 1.09004 * 110.61517 * 88.18115 * 16 14 8 41 41 H 1.09006 * 110.60378 * 325.26358 * 16 14 8 42 42 H 1.09002 * 109.81354 * 257.58491 * 17 16 14 43 43 H 1.09003 * 109.81369 * 136.75382 * 17 16 14 44 44 H 0.97003 * 119.99924 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.61083 * 203.67466 * 27 5 3 46 46 H 1.08997 * 113.61534 * 334.57168 * 27 5 3 47 47 H 1.09001 * 113.61589 * 270.88083 * 28 27 5 48 48 H 1.09002 * 113.60997 * 139.98290 * 28 27 5 49 49 H 1.08999 * 113.61083 * 220.02036 * 29 28 27 50 50 H 1.08996 * 113.69041 * 89.13105 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5353 2.2160 -0.0821 5 6 3.6424 1.1692 0.1021 6 6 4.1483 0.4155 1.3051 7 8 4.8650 -0.5516 1.1574 8 7 3.8042 0.8163 2.5450 9 6 3.0189 2.0376 2.6701 10 6 3.5002 2.8339 3.8853 11 6 3.4672 1.9179 5.1096 12 6 4.4942 0.7969 4.9453 13 1 5.5116 1.1876 4.9589 14 6 4.2387 0.0076 3.6569 15 1 5.1503 -0.5175 3.3718 16 6 3.1674 -1.0234 4.0668 17 6 3.4532 -1.2712 5.5602 18 7 4.2949 -0.1690 6.0442 19 6 4.8110 -0.0561 7.3077 20 1 5.4216 0.7960 7.5673 21 6 4.5492 -1.0368 8.2545 22 7 3.8054 -2.0754 7.9378 23 14 5.2538 -0.8831 9.9777 24 1 4.2960 -0.1452 10.8401 25 1 5.4846 -2.2377 10.5408 26 1 6.5406 -0.1441 9.9222 27 6 4.3511 0.7860 -1.2078 28 6 4.3207 2.2803 -1.5695 29 6 4.2690 2.5643 -0.0590 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.9499 -0.8400 -0.0004 34 1 3.1392 2.6404 1.7700 35 1 1.9671 1.7813 2.7976 36 1 4.5192 3.1814 3.7152 37 1 2.8437 3.6891 4.0461 38 1 2.4719 1.4856 5.2119 39 1 3.7030 2.4974 6.0021 40 1 3.2836 -1.9451 3.4965 41 1 2.1672 -0.6117 3.9315 42 1 3.9781 -2.2185 5.6837 43 1 2.5164 -1.2928 6.1171 44 1 3.6228 -2.7610 8.5994 45 1 5.3570 0.3926 -1.0610 46 1 3.7447 0.1647 -1.8668 47 1 3.4187 2.5824 -2.1018 48 1 5.2342 2.6321 -2.0489 49 1 3.5961 3.3787 0.2092 50 1 5.2517 2.6576 0.4029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672539610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:56 Heat of formation + Delta-G solvation = -12.511705 kcal Electronic energy + Delta-G solvation = -31739.130161 eV Core-core repulsion = 27767.966973 eV Total energy + Delta-G solvation = -3971.163188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70336 -39.68016 -38.22136 -37.02430 -35.42277 -34.80113 -32.61534 -32.28716 -29.38922 -28.63033 -28.21314 -26.33946 -25.80143 -24.40256 -24.36994 -21.99243 -21.81300 -21.02256 -20.06091 -19.53491 -18.37897 -17.80032 -16.91175 -16.44946 -16.19597 -16.04601 -15.26918 -15.18707 -14.84223 -14.70472 -14.31474 -14.23588 -13.74789 -13.60552 -13.41595 -13.13416 -12.92337 -12.71497 -12.56408 -12.49787 -12.26659 -12.01421 -11.95654 -11.53355 -11.37854 -11.24940 -11.05619 -10.94745 -10.80206 -10.71824 -10.64601 -10.41738 -10.18671 -10.10740 -10.00380 -9.66421 -9.60157 -9.45202 -9.37607 -8.61395 -8.34667 -6.87905 -5.72591 -3.07272 2.24346 2.52459 2.91980 3.08728 3.39272 3.44516 3.46325 4.20210 4.21712 4.36840 4.46274 4.47678 4.51146 4.94211 5.01682 5.11993 5.16951 5.27404 5.30444 5.38236 5.39806 5.48704 5.51784 5.55956 5.57802 5.60020 5.65408 5.69909 5.75691 5.79997 5.86925 6.02048 6.09071 6.09714 6.11108 6.21051 6.29712 6.35882 6.51702 6.57419 6.73635 6.95009 7.06007 7.16461 7.47087 7.55283 7.61537 7.81351 7.89890 8.19429 8.25160 9.19638 9.79429 10.44184 11.38328 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.003418 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.651958 B = 8190.856293 C = 8430.245655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.549 3.451 4 O -0.528 6.528 5 C -0.139 4.139 6 C 0.523 3.477 7 O -0.531 6.531 8 N -0.577 5.577 9 C 0.097 3.903 10 C -0.130 4.130 11 C -0.129 4.129 12 C 0.162 3.838 13 H 0.055 0.945 14 C 0.133 3.867 15 H 0.093 0.907 16 C -0.149 4.149 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.102 4.102 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.406 0.594 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 7.286 -19.125 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.334 3.666 4 O -0.404 6.404 5 C -0.146 4.146 6 C 0.308 3.692 7 O -0.408 6.408 8 N -0.308 5.308 9 C -0.026 4.026 10 C -0.168 4.168 11 C -0.169 4.169 12 C 0.053 3.947 13 H 0.073 0.927 14 C 0.029 3.971 15 H 0.111 0.889 16 C -0.188 4.188 17 C 0.055 3.945 18 N -0.320 5.320 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.140 4.140 28 C -0.177 4.177 29 C -0.148 4.148 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.014 7.367 -18.957 20.730 hybrid contribution 0.288 -0.466 1.150 1.274 sum -3.726 6.901 -17.807 19.457 Atomic orbital electron populations 1.21579 0.78953 1.02601 1.02418 1.45733 1.08068 1.08775 1.75337 1.19449 0.87704 0.83910 0.75585 1.90702 1.69394 1.31171 1.49119 1.22377 0.93703 1.01316 0.97170 1.19979 0.80921 0.84411 0.83859 1.90699 1.36932 1.27508 1.85676 1.47093 1.52642 1.25245 1.05795 1.21800 0.94887 0.85409 1.00470 1.21817 1.01541 0.98218 0.95245 1.22096 1.01237 0.97312 0.96298 1.20891 0.96496 0.90247 0.87022 0.92702 1.21226 0.98519 0.91529 0.85822 0.88883 1.23005 0.97685 0.97919 1.00212 1.21047 0.95198 0.91920 0.86348 1.44498 1.58648 1.21269 1.07566 1.19018 1.25555 1.05524 0.85454 0.90393 1.24793 1.00155 0.96915 0.98363 1.69970 1.41849 1.11547 1.33410 0.86121 0.78542 0.76821 0.84275 1.21635 1.21680 1.20671 1.22815 1.01723 0.97281 0.92189 1.22878 1.02937 0.95731 0.96168 1.22906 1.01255 0.93556 0.97090 0.90405 0.91944 0.92035 0.76028 0.89086 0.92311 0.91646 0.91043 0.92045 0.91778 0.92043 0.92715 0.92943 0.94194 0.93740 0.87724 0.90753 0.89588 0.90403 0.88849 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.71 59.84 0.64 1.38 16 2 N -0.73 -7.48 5.61 -67.08 -0.38 -7.86 16 3 C 0.55 6.61 5.09 -10.98 -0.06 6.55 16 4 O -0.53 -7.40 15.35 5.56 0.09 -7.32 16 5 C -0.14 -1.62 0.56 -156.00 -0.09 -1.71 16 6 C 0.52 7.72 6.45 -10.99 -0.07 7.65 16 7 O -0.53 -9.34 15.30 5.56 0.09 -9.26 16 8 N -0.58 -8.90 2.80 -167.47 -0.47 -9.37 16 9 C 0.10 1.33 5.05 -4.43 -0.02 1.31 16 10 C -0.13 -1.79 6.10 -26.74 -0.16 -1.95 16 11 C -0.13 -2.29 5.31 -26.80 -0.14 -2.44 16 12 C 0.16 3.29 3.29 -67.22 -0.22 3.07 16 13 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.13 2.48 2.79 -68.39 -0.19 2.29 16 15 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 16 C -0.15 -2.90 6.46 -25.54 -0.16 -3.07 16 17 C 0.18 4.36 5.39 -3.28 -0.02 4.35 16 18 N -0.60 -14.83 2.94 -163.75 -0.48 -15.31 16 19 C -0.23 -6.20 10.27 -15.06 -0.15 -6.36 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.79 10.29 55.49 0.57 -26.22 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.10 -1.00 6.91 -25.92 -0.18 -1.18 16 28 C -0.14 -1.21 7.80 -25.92 -0.20 -1.41 16 29 C -0.11 -1.12 5.58 -25.92 -0.14 -1.26 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.41 3.85 8.74 -40.82 -0.36 3.49 16 34 H 0.09 1.13 3.28 -51.93 -0.17 0.96 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.42 7.25 -51.93 -0.38 1.05 16 43 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.10 1.09 7.63 -51.93 -0.40 0.70 16 46 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.97 6.31 -51.93 -0.33 0.64 16 50 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -31.80 382.25 -9.38 -41.18 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.26 Total: 4.49 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.27 Total: 6.97 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.75 Total: -58.75 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.17 Total: -16.57 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.80 -9.38 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672539610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.669 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds