Wall clock time and date at job start Tue Mar 31 2020 18:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 120.00088 * 2 1 4 4 O 1.21282 * 120.00001 * 355.51593 * 3 2 1 5 5 C 1.50697 * 119.99762 * 175.51292 * 3 2 1 6 6 C 1.50702 * 112.85438 * 305.14443 * 5 3 2 7 7 O 1.21272 * 119.99806 * 118.93724 * 6 5 3 8 8 N 1.34768 * 119.99863 * 298.94419 * 6 5 3 9 9 C 1.45739 * 117.76123 * 355.79419 * 8 6 5 10 10 C 1.53049 * 109.55860 * 218.90045 * 9 8 6 11 11 C 1.52939 * 108.49026 * 306.19301 * 10 9 8 12 12 C 1.52918 * 109.79298 * 66.00195 * 11 10 9 13 13 H 1.08991 * 111.26731 * 66.63720 * 12 11 10 14 14 C 1.44196 * 117.75856 * 175.81893 * 8 6 5 15 15 H 1.08996 * 108.69137 * 27.02732 * 14 8 6 16 16 C 1.54230 * 111.74862 * 266.47611 * 14 8 6 17 17 C 1.54053 * 103.66697 * 206.72530 * 16 14 8 18 18 N 1.46881 * 107.76147 * 17.16771 * 17 16 14 19 19 C 1.36945 * 125.57987 * 182.94914 * 18 17 16 20 20 H 1.08000 * 119.99687 * 179.97438 * 19 18 17 21 21 C 1.38806 * 119.99965 * 359.97438 * 19 18 17 22 22 N 1.31619 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46892 * 90.00103 * 23 21 19 25 25 H 1.48502 * 109.47123 * 209.99799 * 23 21 19 26 26 H 1.48492 * 109.46928 * 330.00378 * 23 21 19 27 27 C 1.53781 * 113.68931 * 76.41890 * 5 3 2 28 28 C 1.53778 * 87.08299 * 89.12273 * 27 5 3 29 29 C 1.53780 * 87.08133 * 25.43387 * 28 27 5 30 30 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46703 * 299.99629 * 1 2 3 32 32 H 1.09002 * 109.47418 * 59.99158 * 1 2 3 33 33 H 0.96995 * 120.00000 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.45537 * 338.93314 * 9 8 6 35 35 H 1.09006 * 109.45138 * 98.89207 * 9 8 6 36 36 H 1.08997 * 109.63280 * 65.89389 * 10 9 8 37 37 H 1.09000 * 109.62812 * 186.29112 * 10 9 8 38 38 H 1.08996 * 109.41687 * 305.89549 * 11 10 9 39 39 H 1.08998 * 109.41585 * 186.09894 * 11 10 9 40 40 H 1.09004 * 110.61517 * 88.18115 * 16 14 8 41 41 H 1.09006 * 110.60378 * 325.26358 * 16 14 8 42 42 H 1.09002 * 109.81354 * 257.58491 * 17 16 14 43 43 H 1.09003 * 109.81369 * 136.75382 * 17 16 14 44 44 H 0.97003 * 119.99924 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.61083 * 203.67466 * 27 5 3 46 46 H 1.08997 * 113.61534 * 334.57168 * 27 5 3 47 47 H 1.09001 * 113.61589 * 270.88083 * 28 27 5 48 48 H 1.09002 * 113.60997 * 139.98290 * 28 27 5 49 49 H 1.08999 * 113.61083 * 220.02036 * 29 28 27 50 50 H 1.08996 * 113.69041 * 89.13105 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5353 2.2160 -0.0821 5 6 3.6424 1.1692 0.1021 6 6 4.1483 0.4155 1.3051 7 8 4.8650 -0.5516 1.1574 8 7 3.8042 0.8163 2.5450 9 6 3.0189 2.0376 2.6701 10 6 3.5002 2.8339 3.8853 11 6 3.4672 1.9179 5.1096 12 6 4.4942 0.7969 4.9453 13 1 5.5116 1.1876 4.9589 14 6 4.2387 0.0076 3.6569 15 1 5.1503 -0.5175 3.3718 16 6 3.1674 -1.0234 4.0668 17 6 3.4532 -1.2712 5.5602 18 7 4.2949 -0.1690 6.0442 19 6 4.8110 -0.0561 7.3077 20 1 5.4216 0.7960 7.5673 21 6 4.5492 -1.0368 8.2545 22 7 3.8054 -2.0754 7.9378 23 14 5.2538 -0.8831 9.9777 24 1 4.2960 -0.1452 10.8401 25 1 5.4846 -2.2377 10.5408 26 1 6.5406 -0.1441 9.9222 27 6 4.3511 0.7860 -1.2078 28 6 4.3207 2.2803 -1.5695 29 6 4.2690 2.5643 -0.0590 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.9499 -0.8400 -0.0004 34 1 3.1392 2.6404 1.7700 35 1 1.9671 1.7813 2.7976 36 1 4.5192 3.1814 3.7152 37 1 2.8437 3.6891 4.0461 38 1 2.4719 1.4856 5.2119 39 1 3.7030 2.4974 6.0021 40 1 3.2836 -1.9451 3.4965 41 1 2.1672 -0.6117 3.9315 42 1 3.9781 -2.2185 5.6837 43 1 2.5164 -1.2928 6.1171 44 1 3.6228 -2.7610 8.5994 45 1 5.3570 0.3926 -1.0610 46 1 3.7447 0.1647 -1.8668 47 1 3.4187 2.5824 -2.1018 48 1 5.2342 2.6321 -2.0489 49 1 3.5961 3.3787 0.2092 50 1 5.2517 2.6576 0.4029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672539610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:55 Heat of formation + Delta-G solvation = -33.060159 kcal Electronic energy + Delta-G solvation = -31740.021209 eV Core-core repulsion = 27767.966973 eV Total energy + Delta-G solvation = -3972.054236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.75280 -40.95319 -39.47746 -38.04060 -36.96357 -35.67203 -34.23697 -33.98531 -31.10639 -30.12866 -29.31123 -27.32619 -26.63321 -26.23575 -25.70852 -23.37488 -22.74897 -22.31107 -21.78533 -20.43356 -19.71274 -19.06178 -18.77857 -17.49166 -17.28448 -16.98904 -16.79517 -16.33737 -16.07667 -16.01632 -15.93278 -15.44523 -15.07863 -15.00740 -14.61960 -14.30826 -14.18466 -13.93224 -13.78424 -13.61588 -13.46968 -13.23664 -13.14172 -12.97840 -12.82294 -12.69466 -12.42964 -12.38697 -12.30514 -12.05952 -12.00583 -11.93152 -11.70537 -11.60839 -11.39192 -11.21984 -11.02651 -10.71110 -10.66584 -10.20724 -9.71065 -8.92788 -7.85010 -5.21715 1.23660 1.42724 1.45949 1.47550 1.56123 1.83513 2.10505 2.49041 3.24888 3.33095 3.34312 3.42088 3.56344 3.60476 3.76727 3.81596 3.86080 3.94275 4.03317 4.08040 4.27983 4.33896 4.44605 4.50732 4.56261 4.60028 4.60880 4.66346 4.70544 4.78439 4.81211 4.90006 4.91328 4.95870 4.98275 4.99142 5.05273 5.12950 5.28064 5.31529 5.37374 5.39718 5.51741 5.58542 5.60173 5.71682 6.17362 6.23681 6.32998 6.96995 7.03320 7.08343 7.74614 8.38609 9.24920 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.003418 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.651958 B = 8190.856293 C = 8430.245655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.725 5.725 3 C 0.548 3.452 4 O -0.548 6.548 5 C -0.140 4.140 6 C 0.525 3.475 7 O -0.560 6.560 8 N -0.578 5.578 9 C 0.100 3.900 10 C -0.119 4.119 11 C -0.118 4.118 12 C 0.157 3.843 13 H 0.052 0.948 14 C 0.151 3.849 15 H 0.072 0.928 16 C -0.131 4.131 17 C 0.193 3.807 18 N -0.615 5.615 19 C -0.237 4.237 20 H 0.084 0.916 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.268 1.268 27 C -0.100 4.100 28 C -0.126 4.126 29 C -0.111 4.111 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.014 0.986 43 H 0.008 0.992 44 H 0.246 0.754 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.094 0.906 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 9.254 -20.912 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.376 5.376 3 C 0.333 3.667 4 O -0.426 6.426 5 C -0.146 4.146 6 C 0.313 3.687 7 O -0.439 6.439 8 N -0.308 5.308 9 C -0.022 4.022 10 C -0.158 4.158 11 C -0.159 4.159 12 C 0.050 3.950 13 H 0.070 0.930 14 C 0.045 3.955 15 H 0.090 0.910 16 C -0.171 4.171 17 C 0.067 3.933 18 N -0.339 5.339 19 C -0.365 4.365 20 H 0.102 0.898 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.193 1.193 27 C -0.138 4.138 28 C -0.164 4.164 29 C -0.149 4.149 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.129 0.871 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.055 0.945 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.116 0.884 49 H 0.113 0.887 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.040 9.369 -20.783 23.152 hybrid contribution 0.298 -1.098 1.670 2.020 sum -3.742 8.271 -19.113 21.160 Atomic orbital electron populations 1.21722 0.77803 1.04232 1.02058 1.45822 1.08937 1.08512 1.74289 1.19478 0.87697 0.84054 0.75500 1.90695 1.69676 1.31843 1.50350 1.22463 0.93822 1.02178 0.96134 1.20509 0.80036 0.83953 0.84207 1.90691 1.38216 1.28879 1.86105 1.47065 1.52955 1.25614 1.05158 1.21917 0.94282 0.84678 1.01326 1.21783 1.03102 0.98018 0.92878 1.21883 0.99028 0.96804 0.98135 1.21090 0.97177 0.90369 0.86376 0.92994 1.20749 0.97246 0.91256 0.86218 0.90971 1.22790 0.98693 0.98805 0.96793 1.20711 0.93052 0.90526 0.89016 1.44737 1.58612 1.22477 1.08107 1.19399 1.25078 1.05446 0.86616 0.89797 1.25623 1.01023 0.96862 1.02163 1.70189 1.43376 1.12262 1.34208 0.85088 0.78249 0.76395 0.79653 1.21264 1.22280 1.19324 1.22848 1.01260 0.98525 0.91208 1.22815 1.03968 0.94391 0.95177 1.22984 1.01267 0.92290 0.98373 0.87899 0.92971 0.91658 0.75593 0.87113 0.92669 0.90429 0.88270 0.93695 0.92661 0.91379 0.91412 0.96743 0.97426 0.94454 0.88354 0.89699 0.89510 0.88427 0.88742 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.71 127.77 1.37 2.63 16 2 N -0.73 -13.47 5.61 -484.52 -2.72 -16.19 16 3 C 0.55 11.98 5.09 87.66 0.45 12.43 16 4 O -0.55 -14.07 15.35 -3.03 -0.05 -14.11 16 5 C -0.14 -2.94 0.56 -53.15 -0.03 -2.97 16 6 C 0.53 14.77 6.45 87.66 0.57 15.34 16 7 O -0.56 -19.29 15.30 -3.00 -0.05 -19.34 16 8 N -0.58 -17.04 2.80 -802.14 -2.25 -19.29 16 9 C 0.10 2.50 5.05 86.54 0.44 2.93 16 10 C -0.12 -2.97 6.10 30.59 0.19 -2.79 16 11 C -0.12 -4.11 5.31 30.55 0.16 -3.95 16 12 C 0.16 6.39 3.29 44.82 0.15 6.54 16 13 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.15 5.61 2.79 45.92 0.13 5.74 16 15 H 0.07 3.02 7.00 -2.39 -0.02 3.00 16 16 C -0.13 -5.20 6.46 31.37 0.20 -5.00 16 17 C 0.19 9.78 5.39 86.66 0.47 10.25 16 18 N -0.61 -31.50 2.94 -671.99 -1.97 -33.48 16 19 C -0.24 -13.18 10.27 84.03 0.86 -12.31 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 21 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 22 N -0.95 -57.61 10.29 21.65 0.22 -57.39 16 23 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C -0.10 -1.73 6.91 31.12 0.22 -1.51 16 28 C -0.13 -1.79 7.80 31.12 0.24 -1.54 16 29 C -0.11 -1.94 5.58 31.12 0.17 -1.76 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.41 7.02 8.74 -92.71 -0.81 6.21 16 34 H 0.11 2.42 3.28 -2.39 -0.01 2.42 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.70 8.02 -2.39 -0.02 1.68 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.01 0.83 7.25 -2.39 -0.02 0.81 16 43 H 0.01 0.43 7.60 -2.39 -0.02 0.41 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.10 1.87 7.63 -2.39 -0.02 1.85 16 46 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 47 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.09 1.66 6.31 -2.39 -0.02 1.64 16 50 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 Total: -1.00 -70.91 382.25 1.39 -69.51 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.13 Total: 21.50 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.04 Total: 20.85 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.71 Total: -126.34 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.09 Total: -33.45 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.91 1.39 -69.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672539610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.453 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds