Wall clock time and date at job start Tue Mar 31 2020 18:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99847 * 2 1 4 4 O 1.21283 * 120.00346 * 354.86740 * 3 2 1 5 5 C 1.50709 * 120.00000 * 174.86362 * 3 2 1 6 6 C 1.50704 * 112.84914 * 305.93208 * 5 3 2 7 7 O 1.21279 * 120.00001 * 116.39933 * 6 5 3 8 8 N 1.34773 * 119.99671 * 296.40340 * 6 5 3 9 9 C 1.47849 * 122.23361 * 357.63513 * 8 6 5 10 10 C 1.52708 * 111.06926 * 232.50970 * 9 8 6 11 11 C 1.53867 * 111.52524 * 311.47131 * 10 9 8 12 12 C 1.51086 * 107.33840 * 56.92508 * 11 10 9 13 13 H 1.08994 * 108.73042 * 50.83343 * 12 11 10 14 14 C 1.45731 * 122.22785 * 177.66918 * 8 6 5 15 15 H 1.09000 * 111.07111 * 240.50312 * 14 8 6 16 16 C 1.53438 * 116.36736 * 9.87026 * 14 8 6 17 17 C 1.55532 * 101.75320 * 152.52774 * 16 14 8 18 18 N 1.45018 * 119.19272 * 176.10318 * 12 11 10 19 19 C 1.36938 * 126.56264 * 331.17927 * 18 12 11 20 20 H 1.08006 * 119.99511 * 359.97438 * 19 18 12 21 21 C 1.38810 * 120.00217 * 180.02562 * 19 18 12 22 22 N 1.31617 * 119.99690 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00026 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46816 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47205 * 300.00068 * 23 21 19 26 26 H 1.48494 * 109.46733 * 60.00135 * 23 21 19 27 27 C 1.53779 * 113.68783 * 77.19359 * 5 3 2 28 28 C 1.53785 * 87.07842 * 89.13018 * 27 5 3 29 29 C 1.53782 * 113.61490 * 174.73468 * 5 3 2 30 30 H 1.08998 * 109.47294 * 299.99795 * 1 2 3 31 31 H 1.09006 * 109.47444 * 60.00193 * 1 2 3 32 32 H 1.09008 * 109.47079 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99982 * 180.02562 * 2 1 3 34 34 H 1.09006 * 109.15829 * 112.09829 * 9 8 6 35 35 H 1.09002 * 109.11505 * 352.89230 * 9 8 6 36 36 H 1.09008 * 109.07130 * 190.94726 * 10 9 8 37 37 H 1.09002 * 109.07175 * 72.00244 * 10 9 8 38 38 H 1.09004 * 109.88252 * 297.47051 * 11 10 9 39 39 H 1.08996 * 109.88715 * 176.38341 * 11 10 9 40 40 H 1.08997 * 110.98852 * 270.81069 * 16 14 8 41 41 H 1.08998 * 110.98460 * 34.59188 * 16 14 8 42 42 H 1.08999 * 110.06988 * 218.30123 * 17 16 14 43 43 H 1.09001 * 109.87333 * 97.04588 * 17 16 14 44 44 H 0.97001 * 119.99175 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.61484 * 203.66906 * 27 5 3 46 46 H 1.08992 * 113.62076 * 334.58856 * 27 5 3 47 47 H 1.09002 * 113.61601 * 270.88497 * 28 27 5 48 48 H 1.09001 * 113.69382 * 139.99012 * 28 27 5 49 49 H 1.08995 * 113.61222 * 25.34640 * 29 5 3 50 50 H 1.08997 * 113.61162 * 156.25064 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5361 2.2154 -0.0940 5 6 3.6413 1.1698 0.1168 6 6 4.1362 0.4071 1.3187 7 8 4.8174 -0.5851 1.1689 8 7 3.8216 0.8274 2.5599 9 6 3.0380 2.0578 2.8009 10 6 3.7540 2.9810 3.7842 11 6 4.2257 2.2177 5.0341 12 6 5.1152 1.0904 4.5642 13 1 5.8692 1.4971 3.8904 14 6 4.2318 0.0999 3.7542 15 1 3.3663 -0.2249 4.3317 16 6 5.2370 -1.0405 3.5457 17 6 5.9609 -1.0802 4.9217 18 7 5.7737 0.2521 5.5475 19 6 6.1551 0.6212 6.8098 20 1 5.9703 1.6270 7.1573 21 6 6.7801 -0.2970 7.6424 22 7 7.0066 -1.5222 7.2182 23 14 7.3011 0.2067 9.3641 24 1 7.9422 -0.9470 10.0447 25 1 8.2679 1.3308 9.2799 26 1 6.1078 0.6369 10.1362 27 6 4.3632 0.7976 -1.1890 28 6 4.3348 2.2948 -1.5391 29 6 4.2679 2.5668 -0.0270 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.9500 -0.8401 -0.0004 34 1 2.0638 1.7874 3.2085 35 1 2.8971 2.5821 1.8556 36 1 3.0721 3.7753 4.0882 37 1 4.6185 3.4252 3.2907 38 1 3.3658 1.8134 5.5681 39 1 4.7877 2.8859 5.6865 40 1 4.7241 -1.9810 3.3447 41 1 5.9380 -0.8016 2.7460 42 1 7.0232 -1.2787 4.7799 43 1 5.5185 -1.8524 5.5511 44 1 7.4430 -2.1639 7.8002 45 1 5.3681 0.4043 -1.0355 46 1 3.7639 0.1812 -1.8589 47 1 3.4378 2.6003 -2.0778 48 1 5.2519 2.6527 -2.0070 49 1 3.5916 3.3784 0.2412 50 1 5.2467 2.6569 0.4442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672539611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:59 Heat of formation + Delta-G solvation = -27.560967 kcal Electronic energy + Delta-G solvation = -31731.787255 eV Core-core repulsion = 27759.971482 eV Total energy + Delta-G solvation = -3971.815773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.61752 -40.97418 -39.34940 -37.98436 -36.98730 -35.67020 -34.26720 -33.89953 -31.06157 -29.83466 -29.31919 -27.33224 -26.56573 -26.34863 -25.61751 -22.95073 -22.70012 -22.52081 -21.59111 -20.90455 -20.19304 -18.83379 -18.16519 -17.41026 -17.17830 -16.97028 -16.68877 -16.40117 -16.26099 -15.91116 -15.73359 -15.43760 -15.35263 -14.95909 -14.55336 -14.31542 -14.09541 -13.94582 -13.88567 -13.51442 -13.43781 -13.19473 -13.18084 -12.99163 -12.91252 -12.69055 -12.49033 -12.17357 -12.09110 -11.99898 -11.96661 -11.80284 -11.72702 -11.62796 -11.47724 -11.38035 -11.02036 -10.75084 -10.29674 -10.19927 -9.63665 -8.91148 -7.84013 -5.20843 1.27445 1.45101 1.46614 1.49528 1.55553 1.84206 2.11002 2.50499 3.20610 3.34070 3.35059 3.40565 3.52756 3.61375 3.76843 3.87362 3.94266 4.01253 4.02236 4.21001 4.26893 4.32925 4.45773 4.52945 4.55978 4.59065 4.61859 4.64916 4.70642 4.79568 4.87735 4.91967 4.93456 4.97739 4.99119 5.03144 5.06589 5.11431 5.24505 5.31785 5.34532 5.38908 5.47463 5.57563 5.59291 5.72322 6.17894 6.32056 6.39302 7.01052 7.05555 7.06782 7.75631 8.45176 9.27390 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.003414 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.923267 B = 8198.530978 C = 8353.893501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.725 5.725 3 C 0.550 3.450 4 O -0.548 6.548 5 C -0.138 4.138 6 C 0.533 3.467 7 O -0.553 6.553 8 N -0.591 5.591 9 C 0.102 3.898 10 C -0.118 4.118 11 C -0.110 4.110 12 C 0.154 3.846 13 H 0.000 1.000 14 C 0.131 3.869 15 H 0.079 0.921 16 C -0.111 4.111 17 C 0.182 3.818 18 N -0.611 5.611 19 C -0.235 4.235 20 H 0.088 0.912 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.978 3.022 24 H -0.297 1.297 25 H -0.278 1.278 26 H -0.274 1.274 27 C -0.099 4.099 28 C -0.127 4.127 29 C -0.111 4.111 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.000 1.000 43 H 0.026 0.974 44 H 0.246 0.754 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 7.310 -18.203 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.375 5.375 3 C 0.335 3.665 4 O -0.426 6.426 5 C -0.144 4.144 6 C 0.321 3.679 7 O -0.431 6.431 8 N -0.322 5.322 9 C -0.020 4.020 10 C -0.156 4.156 11 C -0.148 4.148 12 C 0.046 3.954 13 H 0.018 0.982 14 C 0.025 3.975 15 H 0.097 0.903 16 C -0.150 4.150 17 C 0.057 3.943 18 N -0.336 5.336 19 C -0.364 4.364 20 H 0.105 0.895 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.223 1.223 25 H -0.204 1.204 26 H -0.199 1.199 27 C -0.137 4.137 28 C -0.165 4.165 29 C -0.149 4.149 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.245 0.755 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.212 7.440 -18.160 23.658 hybrid contribution 0.945 -0.810 1.439 1.903 sum -12.267 6.630 -16.721 21.772 Atomic orbital electron populations 1.21741 0.77659 1.04301 1.02133 1.45823 1.08997 1.08453 1.74247 1.19434 0.87522 0.84089 0.75498 1.90692 1.69659 1.31952 1.50345 1.22448 0.93998 1.01732 0.96247 1.20288 0.79822 0.84260 0.83510 1.90698 1.39209 1.27527 1.85669 1.48020 1.53925 1.25664 1.04612 1.22074 0.94058 0.84351 1.01476 1.21845 1.01420 0.97981 0.94388 1.21386 0.98702 0.96702 0.98039 1.20908 0.92284 0.92121 0.90127 0.98218 1.22060 0.96316 0.93745 0.85337 0.90287 1.22735 0.97825 0.97489 0.96921 1.21468 0.95763 0.87209 0.89863 1.44314 1.68012 1.09199 1.12040 1.19367 1.31548 0.96742 0.88746 0.89469 1.25662 1.01763 0.96015 1.02480 1.70166 1.48525 1.04711 1.36814 0.85161 0.78147 0.76555 0.79526 1.22293 1.20438 1.19938 1.22821 1.01045 0.98365 0.91518 1.22822 1.03868 0.94589 0.95186 1.22926 1.00936 0.92653 0.98360 0.92648 0.91864 0.87777 0.75506 0.90866 0.87907 0.87523 0.91435 0.91854 0.92198 0.91379 0.90541 0.98149 0.95528 0.94457 0.88711 0.89505 0.89324 0.88789 0.88902 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.71 127.77 1.37 2.47 16 2 N -0.72 -12.64 5.60 -484.51 -2.71 -15.35 16 3 C 0.55 11.80 5.31 87.66 0.47 12.27 16 4 O -0.55 -13.83 15.17 -3.04 -0.05 -13.87 16 5 C -0.14 -3.01 0.56 -53.14 -0.03 -3.04 16 6 C 0.53 15.40 6.50 87.66 0.57 15.97 16 7 O -0.55 -19.28 12.89 -3.03 -0.04 -19.32 16 8 N -0.59 -17.55 2.91 -791.13 -2.30 -19.85 16 9 C 0.10 2.45 5.62 86.02 0.48 2.93 16 10 C -0.12 -2.84 5.92 30.79 0.18 -2.65 16 11 C -0.11 -3.65 5.45 30.26 0.16 -3.49 16 12 C 0.15 6.41 2.58 45.50 0.12 6.53 16 13 H 0.00 0.02 8.04 -2.39 -0.02 0.00 16 14 C 0.13 4.87 3.33 46.14 0.15 5.02 16 15 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 16 C -0.11 -4.74 5.05 31.61 0.16 -4.58 16 17 C 0.18 9.59 5.48 86.89 0.48 10.07 16 18 N -0.61 -32.04 3.35 -670.40 -2.24 -34.29 16 19 C -0.24 -13.17 9.94 84.03 0.84 -12.34 16 20 H 0.09 4.59 7.31 -2.91 -0.02 4.57 16 21 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 22 N -0.95 -58.50 10.46 21.65 0.23 -58.28 16 23 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 C -0.10 -1.84 6.90 31.12 0.21 -1.63 16 28 C -0.13 -2.02 7.79 31.12 0.24 -1.78 16 29 C -0.11 -2.15 5.81 31.12 0.18 -1.97 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.10 0.78 8.14 -2.38 -0.02 0.77 16 33 H 0.41 6.59 8.73 -92.71 -0.81 5.78 16 34 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.10 2.27 3.50 -2.39 -0.01 2.26 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 2.11 8.12 -2.38 -0.02 2.09 16 39 H 0.06 2.08 7.70 -2.39 -0.02 2.06 16 40 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 41 H 0.08 3.40 6.13 -2.39 -0.01 3.39 16 42 H 0.00 0.02 7.82 -2.39 -0.02 0.00 16 43 H 0.03 1.53 7.17 -2.39 -0.02 1.52 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.09 1.99 7.68 -2.39 -0.02 1.97 16 46 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.79 6.47 -2.39 -0.02 1.77 16 50 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 Total: -1.00 -72.15 378.27 1.10 -71.05 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.14 Total: 21.44 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 6.05 Total: 20.45 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -7.03 Total: -127.77 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.09 Total: -33.19 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -72.15 1.10 -71.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672539611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.491 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds