Wall clock time and date at job start Tue Mar 31 2020 18:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99685 * 2 1 4 4 O 1.21284 * 120.00184 * 3.90917 * 3 2 1 5 5 C 1.50699 * 119.99901 * 183.90071 * 3 2 1 6 6 C 1.50696 * 112.85416 * 292.65561 * 5 3 2 7 7 O 1.21279 * 120.00190 * 109.83391 * 6 5 3 8 8 N 1.34776 * 119.99493 * 289.83275 * 6 5 3 9 9 C 1.47851 * 122.23095 * 355.13760 * 8 6 5 10 10 C 1.52722 * 111.05982 * 127.53922 * 9 8 6 11 11 C 1.53871 * 111.52496 * 48.53014 * 10 9 8 12 12 C 1.51077 * 107.33816 * 303.07154 * 11 10 9 13 13 H 1.09001 * 108.31623 * 308.76066 * 12 11 10 14 14 C 1.45724 * 122.22909 * 175.16292 * 8 6 5 15 15 H 1.08991 * 111.07137 * 119.45832 * 14 8 6 16 16 C 1.53438 * 116.37541 * 350.08496 * 14 8 6 17 17 C 1.55409 * 101.57509 * 207.05210 * 16 14 8 18 18 N 1.45026 * 119.18666 * 183.88480 * 12 11 10 19 19 C 1.36945 * 126.55693 * 28.79548 * 18 12 11 20 20 H 1.07999 * 120.00126 * 345.49533 * 19 18 12 21 21 C 1.38812 * 119.99946 * 165.49343 * 19 18 12 22 22 N 1.31624 * 119.99860 * 164.40222 * 21 19 18 23 23 Si 1.86803 * 120.00003 * 344.40719 * 21 19 18 24 24 H 1.48496 * 109.46746 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.46976 * 299.99821 * 23 21 19 26 26 H 1.48499 * 109.46981 * 59.99712 * 23 21 19 27 27 C 1.53792 * 113.68611 * 63.92161 * 5 3 2 28 28 C 1.53777 * 87.08060 * 89.12517 * 27 5 3 29 29 C 1.53781 * 113.61435 * 161.45196 * 5 3 2 30 30 H 1.09001 * 109.46736 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46923 * 299.99336 * 1 2 3 32 32 H 1.08998 * 109.47148 * 59.99666 * 1 2 3 33 33 H 0.97003 * 120.00286 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.16237 * 247.94065 * 9 8 6 35 35 H 1.08997 * 109.16198 * 7.18274 * 9 8 6 36 36 H 1.08998 * 109.06844 * 169.05629 * 10 9 8 37 37 H 1.08994 * 109.06843 * 287.99957 * 10 9 8 38 38 H 1.08996 * 109.87959 * 183.61422 * 11 10 9 39 39 H 1.09002 * 109.88053 * 62.53054 * 11 10 9 40 40 H 1.08994 * 110.98776 * 325.37713 * 16 14 8 41 41 H 1.09007 * 110.98275 * 89.14178 * 16 14 8 42 42 H 1.08996 * 110.06414 * 263.52567 * 17 16 14 43 43 H 1.09001 * 109.82959 * 142.30822 * 17 16 14 44 44 H 0.96997 * 120.00164 * 354.88567 * 22 21 19 45 45 H 1.08995 * 113.60879 * 203.67091 * 27 5 3 46 46 H 1.09001 * 113.61470 * 334.57640 * 27 5 3 47 47 H 1.09006 * 113.61432 * 270.88544 * 28 27 5 48 48 H 1.08997 * 113.69517 * 139.99131 * 28 27 5 49 49 H 1.09006 * 113.61206 * 25.35254 * 29 5 3 50 50 H 1.08997 * 113.61807 * 156.16955 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5346 2.2164 0.0716 5 6 3.6433 1.1688 -0.0888 6 6 4.3025 0.5913 1.1371 7 8 4.8648 -0.4815 1.0747 8 7 4.2672 1.2670 2.3027 9 6 3.6887 2.6233 2.4107 10 6 2.6502 2.6896 3.5286 11 6 3.1837 2.0702 4.8322 12 6 3.5921 0.6493 4.5214 13 1 2.7605 0.1562 4.0179 14 6 4.7971 0.7096 3.5404 15 1 5.6015 1.3293 3.9365 16 6 5.1857 -0.7744 3.5083 17 6 5.0037 -1.1768 4.9983 18 7 4.0564 -0.2047 5.5977 19 6 3.6943 -0.1252 6.9160 20 1 3.1910 0.7559 7.2856 21 6 3.9742 -1.1772 7.7772 22 7 3.9149 -0.9953 9.0795 23 14 4.4353 -2.8511 7.0881 24 1 4.6846 -3.7954 8.2068 25 1 3.3244 -3.3628 6.2460 26 1 5.6641 -2.7257 6.2637 27 6 4.1849 0.5938 -1.4083 28 6 4.0969 2.0206 -1.9750 29 6 4.2331 2.5198 -0.5268 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.9501 -0.8400 -0.0004 34 1 4.4858 3.3366 2.6202 35 1 3.2132 2.8857 1.4657 36 1 2.3889 3.7320 3.7105 37 1 1.7566 2.1489 3.2170 38 1 2.4016 2.0735 5.5913 39 1 4.0465 2.6352 5.1851 40 1 4.5145 -1.3398 2.8620 41 1 6.2226 -0.8998 3.1960 42 1 5.9610 -1.1319 5.5174 43 1 4.5927 -2.1844 5.0617 44 1 3.7486 -0.1096 9.4384 45 1 5.2044 0.2157 -1.3338 46 1 3.5055 -0.1098 -1.8894 47 1 3.1327 2.2519 -2.4277 48 1 4.9393 2.2919 -2.6113 49 1 3.5925 3.3712 -0.2964 50 1 5.2653 2.6689 -0.2102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672539612.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:02 Heat of formation + Delta-G solvation = -21.172193 kcal Electronic energy + Delta-G solvation = -32025.439890 eV Core-core repulsion = 28053.901155 eV Total energy + Delta-G solvation = -3971.538735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65531 -41.08930 -39.46572 -38.02527 -37.20263 -35.71837 -34.61071 -33.99899 -31.45004 -30.20541 -29.39690 -27.37644 -26.61827 -26.06786 -25.58985 -23.46278 -22.81507 -22.60409 -21.67558 -20.78237 -20.28824 -19.39734 -18.40758 -17.59481 -17.35665 -17.04689 -16.84555 -16.55005 -16.28420 -15.97023 -15.86632 -15.76449 -15.24218 -15.20634 -14.57050 -14.52917 -14.34007 -14.11634 -13.83009 -13.68374 -13.62945 -13.40205 -13.25498 -13.18896 -13.02797 -12.71376 -12.42655 -12.40070 -12.17851 -11.98178 -11.95426 -11.78796 -11.68996 -11.42398 -11.36238 -11.12647 -11.00784 -10.63225 -10.42085 -10.23156 -9.69668 -9.12889 -8.64418 -5.49971 1.17051 1.40771 1.47501 1.48984 1.68533 1.82286 2.11178 2.53807 2.99356 3.17224 3.28557 3.29011 3.45379 3.59736 3.68841 3.76918 3.81523 3.84257 3.92528 4.05662 4.13874 4.30037 4.30710 4.34471 4.41643 4.48456 4.56003 4.62255 4.67370 4.69294 4.72120 4.80096 4.85431 4.86831 4.93487 4.95334 4.99035 5.00775 5.05329 5.12554 5.15800 5.27916 5.30208 5.36154 5.43838 5.62866 6.08843 6.29699 6.33341 6.77547 6.98247 7.01561 7.43878 8.10178 8.87844 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016914 B = 0.003985 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.012704 B = 7025.177082 C = 7178.726439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.725 5.725 3 C 0.545 3.455 4 O -0.550 6.550 5 C -0.140 4.140 6 C 0.536 3.464 7 O -0.548 6.548 8 N -0.593 5.593 9 C 0.098 3.902 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.151 3.849 13 H 0.002 0.998 14 C 0.130 3.870 15 H 0.091 0.909 16 C -0.098 4.098 17 C 0.103 3.897 18 N -0.619 5.619 19 C -0.302 4.302 20 H 0.052 0.948 21 C -0.072 4.072 22 N -0.964 5.964 23 Si 1.089 2.911 24 H -0.310 1.310 25 H -0.293 1.293 26 H -0.239 1.239 27 C -0.099 4.099 28 C -0.129 4.129 29 C -0.112 4.112 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.249 0.751 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 6.956 -27.153 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.376 5.376 3 C 0.330 3.670 4 O -0.428 6.428 5 C -0.147 4.147 6 C 0.323 3.677 7 O -0.426 6.426 8 N -0.324 5.324 9 C -0.023 4.023 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.043 3.957 13 H 0.019 0.981 14 C 0.025 3.975 15 H 0.108 0.892 16 C -0.136 4.136 17 C -0.021 4.021 18 N -0.345 5.345 19 C -0.430 4.430 20 H 0.070 0.930 21 C -0.265 4.265 22 N -0.608 5.608 23 Si 0.917 3.083 24 H -0.239 1.239 25 H -0.221 1.221 26 H -0.163 1.163 27 C -0.136 4.136 28 C -0.166 4.166 29 C -0.149 4.149 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.246 0.754 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.058 0.942 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.591 5.597 -26.668 27.256 hybrid contribution -0.720 1.101 0.826 1.553 sum -1.311 6.698 -25.843 26.729 Atomic orbital electron populations 1.21713 0.78003 1.04222 1.01914 1.45826 1.08850 1.08667 1.74233 1.19602 0.88014 0.84003 0.75409 1.90683 1.69877 1.31942 1.50271 1.22445 0.92781 1.03918 0.95524 1.20227 0.79884 0.84185 0.83367 1.90688 1.45406 1.22182 1.84353 1.48019 1.58745 1.18464 1.07205 1.22204 0.97166 0.81929 1.01022 1.21787 0.97954 1.02407 0.93244 1.21352 1.00623 0.95113 0.97691 1.20908 0.94292 0.92025 0.88487 0.98063 1.22092 0.96150 0.95549 0.83694 0.89162 1.22519 1.03232 0.94371 0.93471 1.22713 0.92885 0.92541 0.93935 1.44485 1.49921 1.36205 1.03934 1.19997 1.36700 1.02413 0.83906 0.93020 1.26966 0.99776 1.05740 0.94053 1.70999 1.53261 1.24357 1.12199 0.83759 0.78519 0.72715 0.73317 1.23917 1.22083 1.16323 1.22865 1.02747 0.98147 0.89891 1.22827 1.03656 0.94375 0.95773 1.23037 1.01844 0.93295 0.96765 0.87835 0.93538 0.91390 0.75405 0.89004 0.87215 0.88012 0.93345 0.93897 0.91550 0.90008 0.89206 0.93661 0.95666 0.94239 0.88121 0.89721 0.89860 0.88325 0.89149 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.71 127.77 1.37 2.70 16 2 N -0.73 -13.76 5.71 -484.51 -2.77 -16.52 16 3 C 0.54 12.02 5.85 87.66 0.51 12.54 16 4 O -0.55 -14.44 14.79 -3.04 -0.04 -14.49 16 5 C -0.14 -2.76 0.55 -53.15 -0.03 -2.79 16 6 C 0.54 13.98 6.59 87.66 0.58 14.56 16 7 O -0.55 -16.73 13.24 -3.03 -0.04 -16.77 16 8 N -0.59 -16.31 2.91 -791.14 -2.30 -18.61 16 9 C 0.10 2.26 5.66 86.03 0.49 2.75 16 10 C -0.12 -3.07 5.92 30.80 0.18 -2.89 16 11 C -0.11 -3.87 5.39 30.26 0.16 -3.70 16 12 C 0.15 6.14 2.58 45.50 0.12 6.25 16 13 H 0.00 0.08 8.03 -2.39 -0.02 0.06 16 14 C 0.13 4.40 3.32 46.14 0.15 4.55 16 15 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 16 C -0.10 -3.52 4.94 31.57 0.16 -3.36 16 17 C 0.10 4.55 4.58 86.85 0.40 4.94 16 18 N -0.62 -30.62 3.23 -670.64 -2.16 -32.78 16 19 C -0.30 -17.63 10.23 84.03 0.86 -16.77 16 20 H 0.05 3.23 7.54 -2.91 -0.02 3.21 16 21 C -0.07 -4.37 5.49 84.86 0.47 -3.90 16 22 N -0.96 -62.86 13.70 21.65 0.30 -62.56 16 23 Si 1.09 54.86 24.90 68.60 1.71 56.57 16 24 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 25 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.24 -10.53 4.97 99.48 0.49 -10.03 16 27 C -0.10 -1.48 6.88 31.12 0.21 -1.27 16 28 C -0.13 -1.58 7.80 31.12 0.24 -1.33 16 29 C -0.11 -1.72 5.52 31.12 0.17 -1.55 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.41 6.99 8.83 -92.71 -0.82 6.17 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 2.35 3.08 -2.39 -0.01 2.34 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.71 7.79 -2.39 -0.02 1.69 16 39 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 40 H 0.08 3.03 6.37 -2.39 -0.02 3.02 16 41 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 42 H 0.05 2.02 7.00 -2.39 -0.02 2.01 16 43 H 0.03 1.16 4.27 -2.39 -0.01 1.15 16 44 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 45 H 0.10 1.60 7.81 -2.39 -0.02 1.58 16 46 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 47 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.09 1.47 6.38 -2.38 -0.02 1.45 16 50 H 0.10 1.42 8.09 -2.39 -0.02 1.40 16 Total: -1.00 -75.29 371.20 0.61 -74.68 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.12 Total: 19.76 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.04 Total: 10.73 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -6.94 Total: -130.48 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.09 Total: -31.26 kcal Atomic # 14 Polarization: 54.86 SS G_CDS: 1.71 Total: 56.57 kcal Total: -75.29 0.61 -74.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672539612.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.505 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds