Wall clock time and date at job start Tue Mar 31 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99982 * 2 1 4 4 H 1.08001 * 119.99599 * 202.34754 * 3 2 1 5 5 C 1.38812 * 119.99964 * 22.33874 * 3 2 1 6 6 N 1.31620 * 119.99900 * 11.35491 * 5 3 2 7 7 Si 1.86803 * 119.99812 * 191.34724 * 5 3 2 8 8 H 1.48506 * 109.46936 * 60.00432 * 7 5 3 9 9 H 1.48505 * 109.46880 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47230 * 300.00225 * 7 5 3 11 11 C 1.46498 * 120.00287 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47247 * 270.00739 * 11 2 1 13 13 C 1.52999 * 109.47071 * 179.97438 * 12 11 2 14 14 N 1.46495 * 109.47373 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00552 * 270.00058 * 14 13 12 16 16 C 1.34782 * 120.00048 * 89.99643 * 14 13 12 17 17 O 1.21277 * 119.99782 * 0.02562 * 16 14 13 18 18 C 1.50701 * 120.00112 * 180.02562 * 16 14 13 19 19 C 1.52996 * 109.46928 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.47213 * 180.02562 * 19 18 16 21 21 N 1.46491 * 109.47436 * 180.02562 * 20 19 18 22 22 C 1.35761 * 119.62966 * 89.99622 * 21 20 19 23 23 C 1.35348 * 120.70916 * 180.27802 * 22 21 20 24 24 C 1.40205 * 119.94077 * 359.43409 * 23 22 21 25 25 C 1.36396 * 119.26641 * 0.57999 * 24 23 22 26 26 C 1.34668 * 119.62343 * 270.02255 * 21 20 19 27 27 O 1.22056 * 119.98453 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47138 * 274.21680 * 1 2 3 29 29 H 1.09005 * 109.46931 * 34.21040 * 1 2 3 30 30 H 1.08996 * 109.47380 * 154.21349 * 1 2 3 31 31 H 0.97005 * 119.99353 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47316 * 149.99579 * 11 2 1 33 33 H 1.09002 * 109.46470 * 30.00136 * 11 2 1 34 34 H 1.08996 * 109.47909 * 59.99203 * 12 11 2 35 35 H 1.09002 * 109.46894 * 299.99138 * 12 11 2 36 36 H 1.08996 * 109.47476 * 59.99486 * 13 12 11 37 37 H 1.09004 * 109.47084 * 299.99746 * 13 12 11 38 38 H 1.09000 * 109.46745 * 270.00009 * 15 14 13 39 39 H 1.09008 * 109.46587 * 29.99227 * 15 14 13 40 40 H 1.08995 * 109.47474 * 149.99348 * 15 14 13 41 41 H 1.08997 * 109.46980 * 60.00170 * 18 16 14 42 42 H 1.08997 * 109.47237 * 300.00133 * 18 16 14 43 43 H 1.08997 * 109.47338 * 60.00160 * 19 18 16 44 44 H 1.09006 * 109.47156 * 299.99727 * 19 18 16 45 45 H 1.08997 * 109.46971 * 59.99772 * 20 19 18 46 46 H 1.09006 * 109.46704 * 299.99842 * 20 19 18 47 47 H 1.08007 * 119.64564 * 0.02562 * 22 21 20 48 48 H 1.07993 * 120.03239 * 179.70225 * 23 22 21 49 49 H 1.08003 * 120.36023 * 180.31320 * 24 23 22 50 50 H 1.08005 * 120.34298 * 179.73288 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3430 0.4569 6 7 0.3841 2.2691 1.0935 7 14 2.3367 4.0048 0.1685 8 1 2.4916 4.2331 -1.2907 9 1 1.4849 5.0736 0.7496 10 1 3.6720 4.0288 0.8178 11 6 2.1976 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 6 3.2169 -3.0351 1.4438 14 7 3.4615 -3.4572 2.8251 15 6 4.6828 -3.0344 3.5150 16 6 2.5630 -4.2346 3.4614 17 8 1.5521 -4.5850 2.8902 18 6 2.8143 -4.6684 4.8825 19 6 1.6503 -5.5367 5.3641 20 6 1.9051 -5.9766 6.8072 21 7 0.7909 -6.8085 7.2682 22 6 0.8375 -8.1531 7.0872 23 6 -0.1823 -8.9418 7.4995 24 6 -1.2964 -8.3717 8.1316 25 6 -1.3417 -7.0206 8.3121 26 6 -0.2683 -6.2306 7.8662 27 8 -0.2957 -5.0203 8.0218 28 1 -0.3633 0.0756 1.0249 29 1 -0.3633 0.8499 -0.5778 30 1 -0.3634 -0.9253 -0.4470 31 1 -0.0461 3.0777 1.4131 32 1 3.1499 -1.1386 -0.5134 33 1 1.6084 -2.0285 -0.5130 34 1 1.5001 -1.8399 1.9571 35 1 3.0416 -0.9500 1.9568 36 1 4.1693 -2.9054 0.9298 37 1 2.6275 -3.7948 0.9303 38 1 5.4696 -3.7690 3.3438 39 1 5.0005 -2.0653 3.1300 40 1 4.4869 -2.9542 4.5842 41 1 2.9006 -3.7891 5.5209 42 1 3.7393 -5.2432 4.9288 43 1 1.5644 -6.4159 4.7257 44 1 0.7250 -4.9622 5.3178 45 1 1.9907 -5.0971 7.4454 46 1 2.8304 -6.5509 6.8539 47 1 1.6957 -8.5979 6.6054 48 1 -0.1359 -10.0097 7.3457 49 1 -2.1116 -8.9953 8.4678 50 1 -2.1935 -6.5626 8.7931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673457618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:05 Heat of formation + Delta-G solvation = -42.104791 kcal Electronic energy + Delta-G solvation = -28352.950534 eV Core-core repulsion = 24380.504094 eV Total energy + Delta-G solvation = -3972.446440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.30714 -40.96381 -38.03225 -37.95554 -36.80884 -36.41762 -34.28599 -33.63568 -32.00258 -30.78254 -28.82872 -28.08785 -27.81861 -26.55891 -24.94805 -24.38750 -23.51720 -22.50984 -21.95107 -20.10521 -18.79348 -18.63556 -18.27393 -17.91516 -17.34274 -17.17204 -16.93509 -16.63437 -16.56079 -15.83934 -15.62463 -15.52195 -15.27272 -15.04036 -14.75562 -14.68384 -14.23148 -13.96748 -13.82713 -13.33023 -13.31015 -13.24187 -13.16671 -12.99344 -12.82070 -12.74462 -12.67366 -12.58600 -12.52076 -12.47173 -12.28161 -12.08263 -11.90959 -11.84381 -11.44265 -11.10335 -10.99651 -10.84034 -10.65990 -9.67489 -8.95318 -8.81905 -7.84273 -5.33638 -0.05649 0.94002 1.44017 1.47819 1.54591 1.61865 1.67268 2.11972 2.49922 2.70364 3.29782 3.50082 3.65511 3.67476 3.77356 3.94187 3.98286 4.01263 4.14741 4.23913 4.29591 4.32960 4.36402 4.42943 4.48337 4.54478 4.56434 4.58618 4.64550 4.73299 4.77504 4.81313 4.87639 4.95955 5.01681 5.07826 5.16278 5.22995 5.23271 5.24541 5.40798 5.41821 5.59848 5.60885 5.64870 5.70092 6.12237 6.30538 6.43629 7.00847 7.11392 7.19365 7.83837 8.30072 9.20279 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.002024 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.607060 B =13832.036999 C =14532.072518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.622 5.622 3 C -0.260 4.260 4 H 0.079 0.921 5 C -0.063 4.063 6 N -0.946 5.946 7 Si 0.976 3.024 8 H -0.275 1.275 9 H -0.298 1.298 10 H -0.271 1.271 11 C 0.152 3.848 12 C -0.131 4.131 13 C 0.126 3.874 14 N -0.618 5.618 15 C 0.069 3.931 16 C 0.498 3.502 17 O -0.594 6.594 18 C -0.124 4.124 19 C -0.110 4.110 20 C 0.092 3.908 21 N -0.495 5.495 22 C 0.135 3.865 23 C -0.236 4.236 24 C 0.006 3.994 25 C -0.292 4.292 26 C 0.488 3.512 27 O -0.617 6.617 28 H -0.007 1.007 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.246 0.754 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.012 0.988 35 H 0.043 0.957 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.024 0.976 45 H 0.083 0.917 46 H 0.149 0.851 47 H 0.209 0.791 48 H 0.184 0.816 49 H 0.164 0.836 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 -29.137 13.674 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.345 5.345 3 C -0.390 4.390 4 H 0.097 0.903 5 C -0.257 4.257 6 N -0.593 5.593 7 Si 0.804 3.196 8 H -0.201 1.201 9 H -0.225 1.225 10 H -0.196 1.196 11 C 0.026 3.974 12 C -0.172 4.172 13 C 0.002 3.998 14 N -0.349 5.349 15 C -0.072 4.072 16 C 0.288 3.712 17 O -0.475 6.475 18 C -0.164 4.164 19 C -0.149 4.149 20 C -0.029 4.029 21 N -0.203 5.203 22 C 0.008 3.992 23 C -0.258 4.258 24 C -0.016 4.016 25 C -0.314 4.314 26 C 0.293 3.707 27 O -0.505 6.505 28 H 0.011 0.989 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.101 0.899 46 H 0.166 0.834 47 H 0.226 0.774 48 H 0.201 0.799 49 H 0.182 0.818 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.399 -28.404 13.504 33.125 hybrid contribution -0.723 1.785 0.055 1.926 sum 9.676 -26.620 13.559 31.402 Atomic orbital electron populations 1.20487 0.83360 0.95733 0.96996 1.44264 1.01970 1.02195 1.86094 1.19587 0.98304 0.86315 1.34780 0.90326 1.25953 0.98537 1.02423 0.98826 1.70288 1.19605 1.27498 1.41943 0.85208 0.77642 0.78823 0.77974 1.20113 1.22453 1.19614 1.20935 0.96198 0.86488 0.93825 1.22307 0.98175 0.96729 0.99990 1.21396 1.01070 0.94679 0.82655 1.48102 1.22442 1.49875 1.14520 1.22120 0.85264 1.01509 0.98322 1.21450 0.82135 0.77692 0.89956 1.90690 1.28999 1.58277 1.69510 1.21614 1.01619 1.02338 0.90805 1.21529 0.97607 1.00208 0.95563 1.22175 0.89057 0.97164 0.94463 1.45622 1.18776 1.08682 1.47207 1.22869 1.01383 0.80869 0.94050 1.21222 0.94536 1.02685 1.07373 1.21881 0.97565 0.93495 0.88610 1.22112 1.00820 0.95995 1.12455 1.17677 0.84257 0.88520 0.80230 1.90937 1.81092 1.16503 1.62004 0.98880 0.95985 0.95822 0.94464 0.91792 0.93256 0.96865 0.93797 0.87644 0.91422 0.89192 0.91215 0.89293 0.87659 0.83612 0.90291 0.95676 0.89865 0.83355 0.77404 0.79912 0.81826 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.94 9.01 127.77 1.15 11.09 16 2 N -0.62 -33.58 2.93 -726.94 -2.13 -35.70 16 3 C -0.26 -14.78 9.67 84.03 0.81 -13.97 16 4 H 0.08 4.20 7.84 -2.91 -0.02 4.18 16 5 C -0.06 -3.71 5.13 84.86 0.44 -3.27 16 6 N -0.95 -59.66 10.59 21.65 0.23 -59.43 16 7 Si 0.98 46.44 29.57 68.60 2.03 48.46 16 8 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 9 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.15 6.48 5.71 86.38 0.49 6.97 16 12 C -0.13 -5.27 5.86 30.59 0.18 -5.09 16 13 C 0.13 3.71 5.41 86.38 0.47 4.17 16 14 N -0.62 -15.65 2.87 -846.76 -2.43 -18.08 16 15 C 0.07 1.06 10.24 127.77 1.31 2.37 16 16 C 0.50 14.02 7.67 87.66 0.67 14.69 16 17 O -0.59 -23.10 15.56 -3.02 -0.05 -23.15 16 18 C -0.12 -2.08 4.25 29.85 0.13 -1.95 16 19 C -0.11 -2.21 4.83 30.59 0.15 -2.06 16 20 C 0.09 1.29 5.33 86.38 0.46 1.75 16 21 N -0.49 -8.50 2.58 -650.98 -1.68 -10.18 16 22 C 0.13 1.06 10.28 83.42 0.86 1.91 16 23 C -0.24 -1.60 10.01 22.08 0.22 -1.38 16 24 C 0.01 0.07 10.10 22.32 0.23 0.30 16 25 C -0.29 -6.13 9.99 22.40 0.22 -5.90 16 26 C 0.49 13.15 7.41 84.82 0.63 13.78 16 27 O -0.62 -23.29 16.64 -5.50 -0.09 -23.38 16 28 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 29 H 0.02 1.27 7.19 -2.38 -0.02 1.25 16 30 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 31 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.06 2.45 8.03 -2.39 -0.02 2.43 16 33 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 2.42 8.07 -2.39 -0.02 2.40 16 37 H 0.07 2.17 7.42 -2.38 -0.02 2.15 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.20 8.07 -2.38 -0.02 1.18 16 40 H 0.09 1.03 6.44 -2.39 -0.02 1.01 16 41 H 0.11 1.66 7.40 -2.39 -0.02 1.64 16 42 H 0.15 0.95 8.11 -2.39 -0.02 0.93 16 43 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 44 H 0.02 0.78 8.10 -2.38 -0.02 0.76 16 45 H 0.08 1.53 7.39 -2.39 -0.02 1.51 16 46 H 0.15 0.39 8.01 -2.38 -0.02 0.37 16 47 H 0.21 -0.42 8.04 -2.91 -0.02 -0.44 16 48 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 49 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 50 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -95.72 411.21 5.19 -90.54 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.90 Total: 7.51 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 8.41 Total: 23.40 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -6.01 Total: -123.39 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.14 Total: -46.52 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -95.72 5.19 -90.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673457618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.431 kcal (2) G-P(sol) polarization free energy of solvation -95.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds