Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00076 * 2 1 4 4 H 1.08002 * 120.00137 * 202.70439 * 3 2 1 5 5 C 1.38810 * 119.99984 * 22.69827 * 3 2 1 6 6 N 1.31616 * 120.00222 * 11.51717 * 5 3 2 7 7 Si 1.86804 * 120.00007 * 191.51849 * 5 3 2 8 8 H 1.48503 * 109.46874 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47204 * 120.00028 * 7 5 3 10 10 H 1.48496 * 109.47430 * 240.00267 * 7 5 3 11 11 C 1.46503 * 119.99924 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47409 * 270.00420 * 11 2 1 13 13 O 1.42900 * 109.47219 * 64.99992 * 12 11 2 14 14 C 1.42898 * 114.00155 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47104 * 179.97438 * 14 13 12 16 16 N 1.46508 * 109.46486 * 65.00204 * 15 14 13 17 17 C 1.34776 * 119.99370 * 179.97438 * 16 15 14 18 18 O 1.21696 * 120.00801 * 359.97438 * 17 16 15 19 19 C 1.46680 * 119.99821 * 180.02562 * 17 16 15 20 20 C 1.38046 * 126.20798 * 180.02562 * 19 17 16 21 21 C 1.39249 * 106.98232 * 179.97438 * 20 19 17 22 22 C 1.35973 * 108.03466 * 0.04421 * 21 20 19 23 23 N 1.35106 * 108.76557 * 359.91658 * 22 21 20 24 24 H 0.97001 * 125.69065 * 180.02562 * 23 22 21 25 25 C 1.51017 * 123.85019 * 179.82614 * 22 21 20 26 26 C 1.53319 * 108.41248 * 343.34712 * 25 22 21 27 27 C 1.53107 * 109.52578 * 50.17472 * 26 25 22 28 28 C 1.50836 * 127.70860 * 180.31556 * 21 20 19 29 29 H 1.08991 * 109.47575 * 273.92107 * 1 2 3 30 30 H 1.08999 * 109.47019 * 33.92293 * 1 2 3 31 31 H 1.09003 * 109.46736 * 153.91761 * 1 2 3 32 32 H 0.96998 * 120.00096 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.46996 * 150.00445 * 11 2 1 34 34 H 1.08999 * 109.46973 * 30.00528 * 11 2 1 35 35 H 1.09002 * 109.46848 * 305.00393 * 12 11 2 36 36 H 1.08997 * 109.47468 * 184.99971 * 12 11 2 37 37 H 1.09001 * 109.47057 * 60.00048 * 14 13 12 38 38 H 1.08996 * 109.47015 * 299.99998 * 14 13 12 39 39 H 1.08994 * 109.47863 * 305.00537 * 15 14 13 40 40 H 1.08995 * 109.47005 * 184.99941 * 15 14 13 41 41 H 0.96995 * 120.00142 * 359.97438 * 16 15 14 42 42 H 1.08003 * 126.51250 * 359.97187 * 20 19 17 43 43 H 1.09006 * 109.67493 * 103.07487 * 25 22 21 44 44 H 1.09003 * 109.67913 * 223.61285 * 25 22 21 45 45 H 1.08989 * 109.46674 * 170.19592 * 26 25 22 46 46 H 1.09004 * 109.45766 * 290.16540 * 26 25 22 47 47 H 1.08998 * 109.46958 * 49.59232 * 27 26 25 48 48 H 1.09002 * 109.47366 * 169.59532 * 27 26 25 49 49 H 1.09005 * 109.68174 * 283.00231 * 28 21 20 50 50 H 1.08994 * 109.68045 * 43.55211 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2221 -0.3610 5 6 1.5363 2.3415 0.4639 6 7 0.3917 2.2654 1.1092 7 14 2.3352 4.0046 0.1721 8 1 3.6068 3.8192 -0.5722 9 1 1.4183 4.8619 -0.6212 10 1 2.6155 4.6550 1.4774 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 8 1.2059 -1.9928 2.0822 14 6 1.3322 -2.4152 3.4415 15 6 -0.0569 -2.6880 4.0219 16 7 -0.6659 -3.8202 3.3192 17 6 -1.8982 -4.2432 3.6639 18 8 -2.5050 -3.6851 4.5590 19 6 -2.5078 -5.3770 2.9607 20 6 -3.7557 -5.9136 3.2067 21 6 -3.9281 -6.9682 2.3139 22 6 -2.8066 -7.0612 1.5506 23 7 -1.9388 -6.0994 1.9342 24 1 -1.0612 -5.9437 1.5515 25 6 -2.6114 -8.0921 0.4645 26 6 -3.6444 -9.2074 0.6641 27 6 -5.0372 -8.5922 0.8243 28 6 -5.1277 -7.8718 2.1740 29 1 -0.3634 0.0703 1.0251 30 1 -0.3633 0.8527 -0.5735 31 1 -0.3633 -0.9231 -0.4518 32 1 -0.0367 3.0729 1.4337 33 1 3.1499 -1.1386 -0.5133 34 1 1.6084 -2.0286 -0.5130 35 1 2.9641 -0.9123 1.9820 36 1 3.0731 -2.6059 1.4449 37 1 1.8204 -1.6320 4.0214 38 1 1.9298 -3.3256 3.4850 39 1 -0.6827 -1.8043 3.8977 40 1 0.0323 -2.9240 5.0822 41 1 -0.1821 -4.2653 2.6059 42 1 -4.4638 -5.5791 3.9504 43 1 -2.7556 -7.6287 -0.5116 44 1 -1.6057 -8.5075 0.5291 45 1 -3.6369 -9.8687 -0.2022 46 1 -3.3944 -9.7780 1.5586 47 1 -5.2131 -7.8770 0.0208 48 1 -5.7895 -9.3798 0.7808 49 1 -5.1288 -8.6077 2.9781 50 1 -6.0411 -7.2787 2.2173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676134900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -30.766513 kcal Electronic energy + Delta-G solvation = -28830.113848 eV Core-core repulsion = 24858.159073 eV Total energy + Delta-G solvation = -3971.954776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74064 -39.26671 -37.64836 -36.53439 -35.45952 -34.45551 -32.39000 -31.51114 -30.20278 -29.27174 -28.66815 -27.71627 -25.72016 -24.46374 -23.04831 -22.73895 -22.14876 -21.42451 -20.37973 -20.10862 -18.73200 -18.47143 -16.89091 -16.22728 -16.14110 -16.06171 -15.43258 -15.17327 -14.89664 -14.63421 -14.19286 -14.13002 -13.98953 -13.79291 -13.62329 -13.37464 -13.33061 -13.14047 -12.73532 -12.57666 -12.55252 -12.17437 -12.02338 -11.58466 -11.42530 -11.16548 -11.02501 -10.93947 -10.87855 -10.79318 -10.78034 -10.52723 -10.10440 -10.05530 -9.90856 -9.81551 -9.09924 -9.07001 -8.91563 -8.49954 -8.06229 -6.68515 -5.66275 -3.13114 1.39385 2.52309 2.86006 3.15877 3.38750 3.42869 3.45608 3.47657 4.11454 4.37193 4.52386 4.53126 4.56426 4.79266 4.87277 5.03634 5.12325 5.21464 5.23970 5.25818 5.28263 5.36812 5.43659 5.54016 5.55283 5.63141 5.64524 5.69711 5.70633 5.83991 5.96316 6.01216 6.04285 6.08185 6.09022 6.16287 6.19117 6.40124 6.50909 6.68086 6.72752 6.82035 6.93425 7.20935 7.50621 7.52195 7.73833 7.82387 7.97233 8.20624 8.45112 9.29496 9.93058 10.43447 11.37749 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.002236 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.149126 B =12519.099241 C =12907.814371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.901 5.901 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.153 3.847 12 C 0.042 3.958 13 O -0.367 6.367 14 C 0.050 3.950 15 C 0.126 3.874 16 N -0.720 5.720 17 C 0.588 3.412 18 O -0.533 6.533 19 C -0.052 4.052 20 C -0.098 4.098 21 C -0.177 4.177 22 C 0.049 3.951 23 N -0.530 5.530 24 H 0.415 0.585 25 C -0.054 4.054 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.046 4.046 29 H 0.032 0.968 30 H 0.037 0.963 31 H -0.008 1.008 32 H 0.251 0.749 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.024 0.976 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.396 0.604 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -24.988 1.156 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.318 5.318 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.546 5.546 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.286 6.286 14 C -0.028 4.028 15 C 0.002 3.998 16 N -0.371 5.371 17 C 0.375 3.625 18 O -0.410 6.410 19 C -0.165 4.165 20 C -0.125 4.125 21 C -0.183 4.183 22 C -0.069 4.069 23 N -0.126 5.126 24 H 0.252 0.748 25 C -0.092 4.092 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.084 4.084 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.229 0.771 42 H 0.164 0.836 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.515 -24.305 1.738 24.983 hybrid contribution 1.503 1.019 -0.317 1.844 sum -4.012 -23.286 1.421 23.672 Atomic orbital electron populations 1.20688 0.82148 0.94773 0.99372 1.43888 1.02123 1.00209 1.85626 1.19227 0.98165 0.85610 1.35761 0.91541 1.25048 0.97758 0.98428 0.98415 1.70103 1.18029 1.26816 1.39649 0.86231 0.78608 0.84589 0.77369 1.20419 1.21649 1.21808 1.20888 0.96394 0.88942 0.91304 1.23534 0.85020 0.96886 0.98303 1.88015 1.30522 1.87359 1.22717 1.22615 0.95521 0.98472 0.86158 1.21432 0.93545 0.89390 0.95393 1.45784 1.17458 1.34781 1.39126 1.17033 0.80851 0.81939 0.82656 1.90841 1.62204 1.57008 1.30915 1.20430 0.97303 1.00652 0.98080 1.20987 0.94779 0.96204 1.00524 1.19253 0.96821 1.01437 1.00792 1.20444 0.91336 0.94300 1.00808 1.41726 1.16527 1.25742 1.28561 0.74795 1.20320 1.00211 0.93334 0.95342 1.21506 0.94491 0.96717 1.02261 1.21585 0.96615 0.99758 0.97844 1.20025 0.94855 0.96427 0.97062 0.94932 0.94377 0.98983 0.93878 0.92361 0.93993 0.93222 0.95806 0.91867 0.93916 0.89815 0.90287 0.77071 0.83566 0.90102 0.90713 0.91170 0.91431 0.91642 0.91565 0.91383 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.54 8.61 59.85 0.52 5.05 16 2 N -0.60 -15.21 2.89 -181.12 -0.52 -15.74 16 3 C -0.26 -7.13 9.67 -15.06 -0.15 -7.27 16 4 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.90 -26.89 10.62 55.49 0.59 -26.30 16 7 Si 0.90 22.07 29.57 -169.99 -5.03 17.04 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 C 0.15 3.09 6.11 -4.04 -0.02 3.07 16 12 C 0.04 0.76 6.28 37.16 0.23 1.00 16 13 O -0.37 -6.76 9.84 -35.23 -0.35 -7.11 16 14 C 0.05 0.72 6.07 37.16 0.23 0.95 16 15 C 0.13 1.82 6.06 -4.04 -0.02 1.79 16 16 N -0.72 -9.70 5.50 -61.61 -0.34 -10.04 16 17 C 0.59 8.99 7.79 -12.85 -0.10 8.89 16 18 O -0.53 -10.03 16.88 5.19 0.09 -9.95 16 19 C -0.05 -0.68 7.06 -81.84 -0.58 -1.26 16 20 C -0.10 -1.26 10.62 -39.28 -0.42 -1.68 16 21 C -0.18 -1.89 5.91 -104.99 -0.62 -2.51 16 22 C 0.05 0.47 7.02 -81.81 -0.57 -0.10 16 23 N -0.53 -5.34 5.98 -5.50 -0.03 -5.37 16 24 H 0.41 3.15 8.19 -40.82 -0.33 2.82 16 25 C -0.05 -0.36 6.30 -27.56 -0.17 -0.53 16 26 C -0.11 -0.64 5.89 -26.51 -0.16 -0.80 16 27 C -0.12 -0.77 5.90 -26.54 -0.16 -0.93 16 28 C -0.05 -0.37 6.27 -27.68 -0.17 -0.54 16 29 H 0.03 0.93 7.43 -51.93 -0.39 0.54 16 30 H 0.04 1.06 7.20 -51.93 -0.37 0.68 16 31 H -0.01 -0.20 7.85 -51.93 -0.41 -0.60 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 34 H 0.04 0.78 7.87 -51.93 -0.41 0.38 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.40 4.44 7.60 -40.82 -0.31 4.13 16 42 H 0.15 1.84 8.06 -52.48 -0.42 1.41 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.30 8.14 -51.94 -0.42 -0.12 16 46 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 47 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -34.55 405.60 -10.26 -44.81 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.52 Total: 1.44 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.26 Total: 5.10 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.31 Total: -57.45 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.26 Total: -17.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.55 -10.26 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676134900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.045 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds