Wall clock time and date at job start Tue Mar 31 2020 18:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00076 * 2 1 4 4 H 1.08002 * 120.00137 * 202.70439 * 3 2 1 5 5 C 1.38810 * 119.99984 * 22.69827 * 3 2 1 6 6 N 1.31616 * 120.00222 * 11.51717 * 5 3 2 7 7 Si 1.86804 * 120.00007 * 191.51849 * 5 3 2 8 8 H 1.48503 * 109.46874 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47204 * 120.00028 * 7 5 3 10 10 H 1.48496 * 109.47430 * 240.00267 * 7 5 3 11 11 C 1.46503 * 119.99924 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47409 * 270.00420 * 11 2 1 13 13 O 1.42900 * 109.47219 * 64.99992 * 12 11 2 14 14 C 1.42898 * 114.00155 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47104 * 179.97438 * 14 13 12 16 16 N 1.46508 * 109.46486 * 65.00204 * 15 14 13 17 17 C 1.34776 * 119.99370 * 179.97438 * 16 15 14 18 18 O 1.21696 * 120.00801 * 359.97438 * 17 16 15 19 19 C 1.46680 * 119.99821 * 180.02562 * 17 16 15 20 20 C 1.38046 * 126.20798 * 180.02562 * 19 17 16 21 21 C 1.39249 * 106.98232 * 179.97438 * 20 19 17 22 22 C 1.35973 * 108.03466 * 0.04421 * 21 20 19 23 23 N 1.35106 * 108.76557 * 359.91658 * 22 21 20 24 24 H 0.97001 * 125.69065 * 180.02562 * 23 22 21 25 25 C 1.51017 * 123.85019 * 179.82614 * 22 21 20 26 26 C 1.53319 * 108.41248 * 343.34712 * 25 22 21 27 27 C 1.53107 * 109.52578 * 50.17472 * 26 25 22 28 28 C 1.50836 * 127.70860 * 180.31556 * 21 20 19 29 29 H 1.08991 * 109.47575 * 273.92107 * 1 2 3 30 30 H 1.08999 * 109.47019 * 33.92293 * 1 2 3 31 31 H 1.09003 * 109.46736 * 153.91761 * 1 2 3 32 32 H 0.96998 * 120.00096 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.46996 * 150.00445 * 11 2 1 34 34 H 1.08999 * 109.46973 * 30.00528 * 11 2 1 35 35 H 1.09002 * 109.46848 * 305.00393 * 12 11 2 36 36 H 1.08997 * 109.47468 * 184.99971 * 12 11 2 37 37 H 1.09001 * 109.47057 * 60.00048 * 14 13 12 38 38 H 1.08996 * 109.47015 * 299.99998 * 14 13 12 39 39 H 1.08994 * 109.47863 * 305.00537 * 15 14 13 40 40 H 1.08995 * 109.47005 * 184.99941 * 15 14 13 41 41 H 0.96995 * 120.00142 * 359.97438 * 16 15 14 42 42 H 1.08003 * 126.51250 * 359.97187 * 20 19 17 43 43 H 1.09006 * 109.67493 * 103.07487 * 25 22 21 44 44 H 1.09003 * 109.67913 * 223.61285 * 25 22 21 45 45 H 1.08989 * 109.46674 * 170.19592 * 26 25 22 46 46 H 1.09004 * 109.45766 * 290.16540 * 26 25 22 47 47 H 1.08998 * 109.46958 * 49.59232 * 27 26 25 48 48 H 1.09002 * 109.47366 * 169.59532 * 27 26 25 49 49 H 1.09005 * 109.68174 * 283.00231 * 28 21 20 50 50 H 1.08994 * 109.68045 * 43.55211 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2221 -0.3610 5 6 1.5363 2.3415 0.4639 6 7 0.3917 2.2654 1.1092 7 14 2.3352 4.0046 0.1721 8 1 3.6068 3.8192 -0.5722 9 1 1.4183 4.8619 -0.6212 10 1 2.6155 4.6550 1.4774 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 8 1.2059 -1.9928 2.0822 14 6 1.3322 -2.4152 3.4415 15 6 -0.0569 -2.6880 4.0219 16 7 -0.6659 -3.8202 3.3192 17 6 -1.8982 -4.2432 3.6639 18 8 -2.5050 -3.6851 4.5590 19 6 -2.5078 -5.3770 2.9607 20 6 -3.7557 -5.9136 3.2067 21 6 -3.9281 -6.9682 2.3139 22 6 -2.8066 -7.0612 1.5506 23 7 -1.9388 -6.0994 1.9342 24 1 -1.0612 -5.9437 1.5515 25 6 -2.6114 -8.0921 0.4645 26 6 -3.6444 -9.2074 0.6641 27 6 -5.0372 -8.5922 0.8243 28 6 -5.1277 -7.8718 2.1740 29 1 -0.3634 0.0703 1.0251 30 1 -0.3633 0.8527 -0.5735 31 1 -0.3633 -0.9231 -0.4518 32 1 -0.0367 3.0729 1.4337 33 1 3.1499 -1.1386 -0.5133 34 1 1.6084 -2.0286 -0.5130 35 1 2.9641 -0.9123 1.9820 36 1 3.0731 -2.6059 1.4449 37 1 1.8204 -1.6320 4.0214 38 1 1.9298 -3.3256 3.4850 39 1 -0.6827 -1.8043 3.8977 40 1 0.0323 -2.9240 5.0822 41 1 -0.1821 -4.2653 2.6059 42 1 -4.4638 -5.5791 3.9504 43 1 -2.7556 -7.6287 -0.5116 44 1 -1.6057 -8.5075 0.5291 45 1 -3.6369 -9.8687 -0.2022 46 1 -3.3944 -9.7780 1.5586 47 1 -5.2131 -7.8770 0.0208 48 1 -5.7895 -9.3798 0.7808 49 1 -5.1288 -8.6077 2.9781 50 1 -6.0411 -7.2787 2.2173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676134900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:44 Heat of formation + Delta-G solvation = -53.770917 kcal Electronic energy + Delta-G solvation = -28831.111394 eV Core-core repulsion = 24858.159073 eV Total energy + Delta-G solvation = -3972.952321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.60033 -40.43684 -39.05165 -37.25549 -37.14795 -35.81523 -33.44598 -33.12182 -31.43282 -30.15318 -29.78945 -29.00925 -27.83945 -25.32901 -24.82220 -23.63312 -23.08113 -22.22834 -22.16373 -21.16239 -19.45293 -19.42888 -18.79662 -17.66441 -17.42210 -16.92357 -16.87444 -16.41706 -16.22518 -15.80451 -15.47162 -15.25618 -15.16672 -14.84455 -14.75172 -14.65433 -14.47040 -14.07808 -13.99169 -13.79916 -13.48854 -13.26351 -13.18072 -13.05360 -12.77399 -12.64146 -12.55560 -12.50573 -12.36431 -12.01455 -11.80584 -11.70227 -11.64048 -11.54158 -11.33530 -11.31163 -10.64721 -10.42272 -10.30870 -9.79913 -8.91315 -8.75320 -7.79723 -5.28188 0.39353 1.44677 1.46030 1.56247 1.66713 1.96803 2.12693 2.31890 2.51028 2.82542 3.33694 3.74319 3.75329 3.82355 3.95437 3.99510 4.10190 4.12276 4.19806 4.40354 4.42010 4.49372 4.54617 4.56135 4.59595 4.66004 4.70282 4.72578 4.75123 4.84183 4.90653 4.98115 4.98977 5.10699 5.14344 5.18483 5.21938 5.27008 5.34789 5.35241 5.39045 5.55366 5.64884 5.80387 5.84522 5.92572 6.33763 6.37732 6.43002 6.54980 7.05998 7.16997 7.90524 8.36086 9.23551 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.002236 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.149126 B =12519.099241 C =12907.814371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.613 5.613 3 C -0.259 4.259 4 H 0.076 0.924 5 C -0.059 4.059 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.262 1.262 9 H -0.295 1.295 10 H -0.295 1.295 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.394 6.394 14 C 0.054 3.946 15 C 0.130 3.870 16 N -0.709 5.709 17 C 0.585 3.415 18 O -0.580 6.580 19 C -0.079 4.079 20 C -0.115 4.115 21 C -0.193 4.193 22 C 0.064 3.936 23 N -0.519 5.519 24 H 0.427 0.573 25 C -0.054 4.054 26 C -0.110 4.110 27 C -0.119 4.119 28 C -0.048 4.048 29 H -0.002 1.002 30 H 0.008 0.992 31 H 0.018 0.982 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.409 0.591 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -27.835 -0.626 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.336 5.336 3 C -0.389 4.389 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.186 1.186 9 H -0.222 1.222 10 H -0.223 1.223 11 C 0.019 3.981 12 C -0.028 4.028 13 O -0.314 6.314 14 C -0.023 4.023 15 C 0.007 3.993 16 N -0.360 5.360 17 C 0.374 3.626 18 O -0.461 6.461 19 C -0.191 4.191 20 C -0.143 4.143 21 C -0.199 4.199 22 C -0.055 4.055 23 N -0.115 5.115 24 H 0.267 0.733 25 C -0.092 4.092 26 C -0.148 4.148 27 C -0.156 4.156 28 C -0.085 4.085 29 H 0.016 0.984 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.245 0.755 42 H 0.153 0.847 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.601 -27.197 -0.083 27.434 hybrid contribution 0.921 1.762 0.196 1.998 sum -2.681 -25.435 0.113 25.576 Atomic orbital electron populations 1.20303 0.83081 0.94633 0.96930 1.44110 1.01960 1.01725 1.85837 1.19615 0.98377 0.86615 1.34293 0.90618 1.25842 0.98547 1.01984 0.98965 1.70296 1.19722 1.27062 1.41423 0.85200 0.78164 0.80185 0.76882 1.18574 1.22190 1.22259 1.21156 0.96822 0.87041 0.93123 1.23276 0.85265 0.98066 0.96172 1.87971 1.31072 1.87793 1.24574 1.22702 0.95512 0.99870 0.84174 1.21321 0.93151 0.88320 0.96547 1.45647 1.17041 1.34143 1.39138 1.17356 0.80919 0.82119 0.82170 1.90803 1.63408 1.58750 1.33138 1.20086 0.97901 1.01246 0.99899 1.21160 0.94828 0.97230 1.01033 1.19604 0.98372 1.01352 1.00537 1.21075 0.90384 0.93721 1.00369 1.41678 1.17071 1.25198 1.27573 0.73334 1.20521 1.01738 0.92638 0.94302 1.21537 0.93476 0.96552 1.03249 1.21592 0.97841 0.99935 0.96257 1.20107 0.93596 0.96233 0.98606 0.98380 0.97327 0.96363 0.94703 0.90794 0.92079 0.96019 0.90979 0.92447 0.89922 0.93780 0.88768 0.75520 0.84656 0.89064 0.88680 0.89035 0.91450 0.92163 0.89947 0.90769 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.33 8.61 127.77 1.10 11.43 16 2 N -0.61 -30.98 2.89 -726.95 -2.10 -33.08 16 3 C -0.26 -14.20 9.67 84.03 0.81 -13.38 16 4 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 5 C -0.06 -3.36 5.12 84.86 0.43 -2.92 16 6 N -0.94 -57.78 10.62 21.65 0.23 -57.55 16 7 Si 0.97 45.84 29.57 68.60 2.03 47.87 16 8 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 11 C 0.14 5.50 6.11 86.38 0.53 6.03 16 12 C 0.05 1.73 6.28 71.98 0.45 2.18 16 13 O -0.39 -14.03 9.84 -148.98 -1.47 -15.50 16 14 C 0.05 1.49 6.07 71.98 0.44 1.93 16 15 C 0.13 3.83 6.06 86.38 0.52 4.35 16 16 N -0.71 -19.00 5.50 -467.07 -2.57 -21.56 16 17 C 0.58 18.54 7.79 86.45 0.67 19.22 16 18 O -0.58 -23.25 16.88 -4.33 -0.07 -23.32 16 19 C -0.08 -2.10 7.06 40.36 0.29 -1.81 16 20 C -0.12 -3.07 10.62 22.47 0.24 -2.83 16 21 C -0.19 -4.01 5.91 -20.10 -0.12 -4.13 16 22 C 0.06 1.11 7.02 41.63 0.29 1.41 16 23 N -0.52 -9.72 5.98 -171.30 -1.02 -10.75 16 24 H 0.43 5.54 8.19 -92.71 -0.76 4.78 16 25 C -0.05 -0.53 6.30 30.06 0.19 -0.34 16 26 C -0.11 -0.89 5.89 30.74 0.18 -0.71 16 27 C -0.12 -1.23 5.90 30.72 0.18 -1.05 16 28 C -0.05 -0.72 6.27 29.98 0.19 -0.53 16 29 H 0.00 -0.13 7.43 -2.39 -0.02 -0.15 16 30 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 31 H 0.02 0.83 7.85 -2.39 -0.02 0.82 16 32 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.07 2.57 8.03 -2.39 -0.02 2.55 16 34 H 0.06 2.09 7.87 -2.39 -0.02 2.07 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.41 8.57 7.60 -92.71 -0.70 7.87 16 42 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 43 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.07 0.58 8.11 -2.39 -0.02 0.56 16 47 H 0.06 0.70 8.11 -2.39 -0.02 0.68 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -78.07 405.60 0.90 -77.17 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.52 Total: 17.87 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 6.40 Total: 18.84 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -5.46 Total: -122.94 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.54 Total: -38.82 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -78.07 0.90 -77.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676134900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.401 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds