Wall clock time and date at job start Tue Mar 31 2020 18:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00018 * 2 1 4 4 C 1.50698 * 109.46893 * 90.00228 * 3 2 1 5 5 O 1.21290 * 120.00419 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00259 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00282 * 179.97438 * 6 4 3 8 8 C 1.51228 * 111.06882 * 291.65751 * 7 6 4 9 9 C 1.55685 * 104.61488 * 276.11579 * 8 7 6 10 10 C 1.56287 * 105.93330 * 352.75372 * 9 8 7 11 11 C 1.50517 * 101.75695 * 335.74102 * 10 9 8 12 12 H 1.08998 * 108.13700 * 293.74955 * 11 10 9 13 13 N 1.42700 * 128.16007 * 161.32595 * 11 10 9 14 14 C 1.36933 * 127.10644 * 28.27459 * 13 11 10 15 15 H 1.08000 * 120.00006 * 342.99481 * 14 13 11 16 16 C 1.38809 * 120.00232 * 162.99986 * 14 13 11 17 17 N 1.31618 * 119.99966 * 171.08791 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 351.09047 * 16 14 13 19 19 H 1.48503 * 109.47262 * 185.47368 * 18 16 14 20 20 H 1.48506 * 109.46676 * 305.47323 * 18 16 14 21 21 H 1.48497 * 109.47232 * 65.47096 * 18 16 14 22 22 C 1.49292 * 105.79138 * 208.53409 * 13 11 10 23 23 C 1.52127 * 111.49760 * 71.47363 * 7 6 4 24 24 C 1.34773 * 119.99986 * 179.97438 * 2 1 3 25 25 O 1.21284 * 120.00366 * 180.02562 * 24 2 1 26 26 C 1.50703 * 120.00005 * 0.02562 * 24 2 1 27 27 C 1.52999 * 117.49992 * 248.74477 * 26 24 2 28 28 C 1.53000 * 117.49861 * 180.08481 * 26 24 2 29 29 H 1.08998 * 109.47870 * 89.99750 * 1 2 3 30 30 H 1.09001 * 109.47395 * 209.99969 * 1 2 3 31 31 H 1.08999 * 109.47318 * 329.99882 * 1 2 3 32 32 H 1.08994 * 109.47132 * 330.00120 * 3 2 1 33 33 H 1.08992 * 109.47000 * 209.99675 * 3 2 1 34 34 H 0.97001 * 119.99803 * 0.02562 * 6 4 3 35 35 H 1.09007 * 110.40513 * 157.33426 * 8 7 6 36 36 H 1.08996 * 110.50924 * 34.95899 * 8 7 6 37 37 H 1.08998 * 110.16325 * 233.63692 * 9 8 7 38 38 H 1.09005 * 110.21800 * 111.89977 * 9 8 7 39 39 H 1.09000 * 110.96962 * 217.62286 * 10 9 8 40 40 H 1.09008 * 110.96869 * 93.85953 * 10 9 8 41 41 H 0.96994 * 120.00407 * 356.39741 * 17 16 14 42 42 H 1.08996 * 110.05255 * 127.66164 * 22 13 11 43 43 H 1.09000 * 110.04812 * 249.13381 * 22 13 11 44 44 H 1.08999 * 111.15398 * 192.00180 * 23 7 6 45 45 H 1.08998 * 111.15211 * 316.18547 * 23 7 6 46 46 H 1.09000 * 115.55064 * 34.41879 * 26 24 2 47 47 H 1.09006 * 117.49737 * 359.97438 * 27 26 24 48 48 H 1.08997 * 117.50145 * 145.01634 * 27 26 24 49 49 H 1.09006 * 117.49842 * 214.97791 * 28 26 24 50 50 H 1.09006 * 117.50006 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 8 2.0542 1.0214 2.3427 6 7 3.1116 2.8510 1.6672 7 6 3.3553 3.2741 3.0484 8 6 2.0644 3.6624 3.7338 9 6 1.8262 5.1423 3.3134 10 6 3.1142 5.5829 2.5456 11 6 4.1429 4.6367 3.1042 12 1 4.2808 4.8702 4.1599 13 7 5.4142 4.2922 2.5550 14 6 6.2054 5.0697 1.7522 15 1 5.7859 5.9283 1.2492 16 6 7.5468 4.7541 1.5848 17 7 8.2647 5.3893 0.6828 18 14 8.3331 3.4280 2.6396 19 1 9.7909 3.3740 2.3617 20 1 8.1139 3.7421 4.0744 21 1 7.7194 2.1137 2.3213 22 6 5.7004 2.9065 3.0313 23 6 4.3977 2.3964 3.7247 24 6 2.1388 -1.1672 0.0005 25 8 3.3516 -1.1672 0.0010 26 6 1.3853 -2.4723 0.0005 27 6 1.4576 -3.3298 1.2655 28 6 2.2074 -3.7627 0.0031 29 1 -0.3635 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6084 2.0284 -0.5138 33 1 3.1498 1.1384 -0.5137 34 1 3.4268 3.3969 0.9300 35 1 2.1712 3.5871 4.8161 36 1 1.2445 3.0325 3.3890 37 1 1.6837 5.7654 4.1963 38 1 0.9566 5.2130 2.6600 39 1 3.3703 6.6173 2.7747 40 1 2.9957 5.4406 1.4713 41 1 7.8448 6.0406 0.0995 42 1 5.9516 2.2653 2.1864 43 1 6.5217 2.9199 3.7479 44 1 4.4239 2.5741 4.7998 45 1 4.2255 1.3423 3.5069 46 1 0.4479 -2.4739 -0.5557 47 1 2.0506 -2.9502 2.0977 48 1 0.5679 -3.8958 1.5415 49 1 1.8106 -4.6134 -0.5510 50 1 3.2933 -3.6676 0.0044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676809216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:27 Heat of formation + Delta-G solvation = 11.535193 kcal Electronic energy + Delta-G solvation = -31073.190945 eV Core-core repulsion = 27103.070509 eV Total energy + Delta-G solvation = -3970.120436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81279 -40.12545 -38.24262 -36.32586 -35.40894 -34.72006 -33.18022 -32.11804 -30.36007 -28.92974 -27.24037 -26.77922 -26.25242 -23.92979 -23.41831 -22.62363 -21.45293 -20.89693 -19.50834 -19.03461 -18.89855 -17.65479 -17.32949 -17.06613 -16.40105 -15.72114 -15.43973 -15.11472 -14.96232 -14.79117 -14.51159 -14.19406 -14.03609 -13.67655 -13.41856 -13.09341 -13.02148 -12.78905 -12.67879 -12.46240 -12.08461 -11.98750 -11.91086 -11.73550 -11.52758 -11.23018 -11.02909 -10.94084 -10.80510 -10.71137 -10.70192 -10.36036 -10.02131 -9.94183 -9.89165 -9.63875 -9.24578 -9.06810 -8.82254 -8.68479 -8.58867 -7.02667 -6.32639 -3.29707 2.37478 2.69589 2.90245 3.46303 3.50179 3.58202 3.70109 3.71297 4.30689 4.35650 4.57861 4.61042 4.68241 4.82750 4.89757 4.92278 5.01915 5.05699 5.10674 5.23329 5.26544 5.39290 5.41368 5.42164 5.47355 5.53263 5.54202 5.57523 5.67848 5.76659 5.83330 5.84523 5.94334 6.02528 6.13279 6.17447 6.20296 6.24494 6.33264 6.40326 6.43735 6.63640 6.69866 6.83978 7.04955 7.19488 7.69484 7.88520 8.10278 8.29177 8.54956 8.98070 9.57433 10.23784 11.17796 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012367 B = 0.004006 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.501969 B = 6988.356590 C = 8181.514054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.596 5.596 3 C 0.094 3.906 4 C 0.498 3.502 5 O -0.540 6.540 6 N -0.693 5.693 7 C 0.131 3.869 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.111 4.111 11 C 0.160 3.840 12 H 0.026 0.974 13 N -0.594 5.594 14 C -0.323 4.323 15 H 0.078 0.922 16 C -0.015 4.015 17 N -0.929 5.929 18 Si 1.069 2.931 19 H -0.300 1.300 20 H -0.295 1.295 21 H -0.287 1.287 22 C 0.106 3.894 23 C -0.121 4.121 24 C 0.548 3.452 25 O -0.532 6.532 26 C -0.192 4.192 27 C -0.149 4.149 28 C -0.150 4.150 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.261 0.739 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.468 -11.084 -0.411 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C -0.033 4.033 4 C 0.283 3.717 5 O -0.417 6.417 6 N -0.344 5.344 7 C 0.043 3.957 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.149 4.149 11 C 0.050 3.950 12 H 0.043 0.957 13 N -0.319 5.319 14 C -0.450 4.450 15 H 0.096 0.904 16 C -0.215 4.215 17 N -0.569 5.569 18 Si 0.902 3.098 19 H -0.228 1.228 20 H -0.223 1.223 21 H -0.214 1.214 22 C -0.018 4.018 23 C -0.160 4.160 24 C 0.336 3.664 25 O -0.408 6.408 26 C -0.213 4.213 27 C -0.187 4.187 28 C -0.187 4.187 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.141 0.859 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.571 -12.241 0.489 22.248 hybrid contribution -1.416 1.229 -0.655 1.987 sum -19.987 -11.012 -0.166 22.821 Atomic orbital electron populations 1.21772 0.78943 1.03769 1.01307 1.47227 1.07007 1.04785 1.73843 1.21326 1.00229 0.86424 0.95274 1.20957 0.78221 0.80958 0.91610 1.90645 1.51693 1.53551 1.45820 1.45724 1.56618 1.23379 1.08712 1.21530 0.94311 0.98004 0.81839 1.21836 0.97039 0.95843 1.00033 1.22816 0.97394 0.95613 0.99582 1.21786 0.94127 0.99294 0.99742 1.20802 0.86616 0.91243 0.96349 0.95696 1.43942 1.17889 1.11533 1.58519 1.20098 0.91781 1.09738 1.23366 0.90412 1.25862 0.92455 1.02572 1.00614 1.70911 1.37815 1.27778 1.20442 0.83847 0.75023 0.75796 0.75137 1.22848 1.22278 1.21400 1.22846 0.95413 0.86516 0.97007 1.22446 0.94629 0.99758 0.99122 1.19677 0.87305 0.84294 0.75117 1.90734 1.13874 1.87050 1.49100 1.22148 1.02492 0.90673 1.05965 1.22943 1.03112 1.01061 0.91557 1.22981 1.00213 0.95091 1.00418 0.92553 0.90673 0.91005 0.87711 0.86850 0.76034 0.91128 0.91184 0.91825 0.92177 0.91549 0.91680 0.92880 0.92694 0.94535 0.90733 0.90726 0.85931 0.88047 0.87848 0.87969 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.01 59.84 0.60 1.29 16 2 N -0.60 -7.28 2.36 -182.97 -0.43 -7.71 16 3 C 0.09 1.21 5.89 -5.19 -0.03 1.18 16 4 C 0.50 7.94 7.22 -10.99 -0.08 7.86 16 5 O -0.54 -9.94 14.59 5.55 0.08 -9.86 16 6 N -0.69 -11.35 4.40 -46.58 -0.20 -11.55 16 7 C 0.13 2.26 0.40 -130.71 -0.05 2.21 16 8 C -0.11 -1.60 6.02 -26.19 -0.16 -1.75 16 9 C -0.12 -1.53 6.93 -23.54 -0.16 -1.69 16 10 C -0.11 -1.79 6.46 -26.21 -0.17 -1.96 16 11 C 0.16 3.09 2.64 -68.72 -0.18 2.91 16 12 H 0.03 0.51 7.94 -51.93 -0.41 0.10 16 13 N -0.59 -13.98 3.01 -162.75 -0.49 -14.46 16 14 C -0.32 -8.86 10.59 -15.06 -0.16 -9.02 16 15 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.87 13.70 55.49 0.76 -28.11 16 18 Si 1.07 27.39 24.58 -169.99 -4.18 23.21 16 19 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 20 H -0.29 -7.28 6.69 56.52 0.38 -6.90 16 21 H -0.29 -6.98 5.57 56.52 0.31 -6.67 16 22 C 0.11 2.38 4.50 -0.81 0.00 2.37 16 23 C -0.12 -2.29 6.21 -25.49 -0.16 -2.45 16 24 C 0.55 7.77 7.46 -10.99 -0.08 7.69 16 25 O -0.53 -9.89 15.84 5.55 0.09 -9.80 16 26 C -0.19 -1.94 4.79 -91.77 -0.44 -2.38 16 27 C -0.15 -1.40 10.24 -26.69 -0.27 -1.68 16 28 C -0.15 -1.43 10.05 -26.69 -0.27 -1.70 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.54 6.64 -51.93 -0.34 0.19 16 31 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.11 1.62 7.42 -51.93 -0.39 1.23 16 34 H 0.40 6.62 7.79 -40.82 -0.32 6.31 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.06 6.85 -51.93 -0.36 0.70 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.04 7.35 -51.92 -0.38 0.66 16 41 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 42 H 0.06 1.33 6.57 -51.93 -0.34 0.99 16 43 H 0.04 0.86 4.44 -51.93 -0.23 0.63 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.48 7.19 -51.93 -0.37 1.10 16 46 H 0.12 0.89 7.27 -51.93 -0.38 0.51 16 47 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.11 1.26 7.67 -51.93 -0.40 0.86 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -35.31 386.09 -8.52 -43.83 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.25 Total: 6.29 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.71 Total: 2.35 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.37 Total: -61.84 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 27.39 SS G_CDS: -4.18 Total: 23.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.31 -8.52 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676809216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.362 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds