Wall clock time and date at job start Tue Mar 31 2020 18:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 8 8 C 1.53584 * 112.24570 * 300.35506 * 7 6 4 9 9 C 1.54177 * 106.69707 * 237.98346 * 8 7 6 10 10 C 1.54762 * 104.36677 * 335.86690 * 9 8 7 11 11 C 1.54773 * 103.21156 * 37.32815 * 10 9 8 12 12 H 1.08997 * 112.61669 * 85.33112 * 11 10 9 13 13 N 1.46978 * 108.68828 * 209.79960 * 11 10 9 14 14 C 1.36944 * 125.57690 * 294.16261 * 13 11 10 15 15 H 1.08007 * 119.99588 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00146 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99417 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47366 * 89.99639 * 18 16 14 20 20 H 1.48499 * 109.47317 * 210.00046 * 18 16 14 21 21 H 1.48507 * 109.47038 * 330.00387 * 18 16 14 22 22 C 1.47363 * 108.84077 * 114.12703 * 13 11 10 23 23 C 1.54863 * 104.82479 * 335.30699 * 22 13 11 24 24 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 25 25 O 1.21285 * 119.99996 * 179.97438 * 24 2 1 26 26 C 1.50698 * 120.00318 * 0.02562 * 24 2 1 27 27 C 1.52998 * 117.49687 * 248.62145 * 26 24 2 28 28 C 1.52997 * 60.00156 * 252.50660 * 27 26 24 29 29 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 30 30 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 31 31 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 32 32 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 33 33 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 34 34 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 35 35 H 1.08994 * 110.01752 * 358.13200 * 8 7 6 36 36 H 1.09002 * 110.01718 * 119.52264 * 8 7 6 37 37 H 1.08999 * 110.80352 * 216.92027 * 9 8 7 38 38 H 1.09001 * 109.98263 * 94.39950 * 9 8 7 39 39 H 1.09000 * 110.66697 * 278.89920 * 10 9 8 40 40 H 1.08995 * 110.81061 * 155.83082 * 10 9 8 41 41 H 0.97001 * 119.99416 * 180.02562 * 17 16 14 42 42 H 1.08997 * 110.37079 * 94.15367 * 22 13 11 43 43 H 1.09008 * 110.36617 * 216.47122 * 22 13 11 44 44 H 1.08997 * 110.97345 * 278.95737 * 23 22 13 45 45 H 1.09001 * 110.96981 * 155.18784 * 23 22 13 46 46 H 1.09001 * 115.54927 * 34.32397 * 26 24 2 47 47 H 1.09001 * 117.50179 * 359.97438 * 27 26 24 48 48 H 1.09009 * 117.49856 * 145.01536 * 27 26 24 49 49 H 1.08998 * 117.50267 * 252.51576 * 28 27 26 50 50 H 1.08997 * 117.51514 * 107.47808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0550 1.0209 2.3426 6 7 3.1115 2.8511 1.6671 7 6 3.3561 3.2737 3.0483 8 6 2.0523 3.4685 3.8363 9 6 2.0510 4.9267 4.3369 10 6 3.5471 5.3208 4.3757 11 6 4.1312 4.6153 3.1281 12 1 4.0157 5.2064 2.2197 13 7 5.5394 4.2853 3.3898 14 6 6.5500 5.1918 3.5694 15 1 6.3403 6.2503 3.5236 16 6 7.8436 4.7503 3.8113 17 7 8.0986 3.4603 3.8685 18 14 9.2222 5.9867 4.0555 19 1 9.3338 6.3254 5.4971 20 1 10.5025 5.4001 3.5843 21 1 8.9263 7.2178 3.2795 22 6 5.6855 2.8194 3.4281 23 6 4.2807 2.2910 3.8096 24 6 2.1389 -1.1672 -0.0005 25 8 3.3517 -1.1672 -0.0010 26 6 1.3855 -2.4723 -0.0017 27 6 1.4603 -3.3323 1.2615 28 6 2.2076 -3.7627 -0.0022 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6083 2.0284 -0.5138 33 1 3.1498 1.1384 -0.5139 34 1 3.4266 3.3970 0.9299 35 1 1.1945 3.2819 3.1903 36 1 2.0292 2.7937 4.6921 37 1 1.6127 4.9938 5.3326 38 1 1.5075 5.5606 3.6362 39 1 4.0195 4.9485 5.2848 40 1 3.6650 6.4015 4.2972 41 1 9.0025 3.1517 4.0379 42 1 5.9800 2.4418 2.4489 43 1 6.4173 2.5307 4.1826 44 1 4.1182 2.3566 4.8854 45 1 4.1391 1.2695 3.4567 46 1 0.4473 -2.4730 -0.5566 47 1 2.0548 -2.9543 2.0933 48 1 0.5710 -3.8989 1.5380 49 1 1.8101 -4.6124 -0.5573 50 1 3.2934 -3.6676 -0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676809217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:30 Heat of formation + Delta-G solvation = -6.356376 kcal Electronic energy + Delta-G solvation = -30594.015040 eV Core-core repulsion = 26623.118767 eV Total energy + Delta-G solvation = -3970.896273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54627 -39.80049 -38.07136 -36.32007 -35.41282 -34.21430 -33.39320 -31.44473 -30.09535 -28.88426 -26.79283 -26.70122 -25.85979 -23.86533 -23.71773 -22.59628 -21.25688 -19.96252 -19.73065 -18.99423 -18.72684 -17.65581 -17.07198 -16.99021 -16.37122 -15.59666 -15.34973 -15.02248 -14.83933 -14.52039 -14.20887 -14.06072 -13.63225 -13.49474 -13.12697 -13.01654 -12.84303 -12.77181 -12.46200 -12.17677 -12.06220 -11.73302 -11.70966 -11.58343 -11.13597 -10.95384 -10.83254 -10.78946 -10.68760 -10.66367 -10.50623 -10.14386 -10.05676 -9.93721 -9.91548 -9.78489 -9.62404 -9.49663 -8.70022 -8.62858 -8.50265 -6.82576 -5.61247 -3.05034 2.37398 2.69070 2.89228 3.40917 3.45519 3.48121 3.55729 3.71921 4.31096 4.49458 4.59497 4.70287 4.80428 4.85063 4.91699 4.99381 5.05377 5.18302 5.22287 5.33832 5.36943 5.42420 5.47984 5.54222 5.54630 5.68509 5.79410 5.84077 5.89252 5.96785 6.01987 6.08264 6.16212 6.20145 6.28686 6.37917 6.44151 6.56024 6.62930 6.80719 6.83625 7.02117 7.16474 7.18493 7.59959 7.67404 7.83288 7.92308 8.09809 8.40163 8.53861 9.24211 9.85339 10.49683 11.40980 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.003187 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.412169 B = 8783.654489 C = 9881.274258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.095 3.905 4 C 0.497 3.503 5 O -0.530 6.530 6 N -0.704 5.704 7 C 0.162 3.838 8 C -0.107 4.107 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.161 3.839 12 H 0.046 0.954 13 N -0.596 5.596 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.153 3.847 23 C -0.140 4.140 24 C 0.548 3.452 25 O -0.531 6.531 26 C -0.193 4.193 27 C -0.149 4.149 28 C -0.150 4.150 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.399 0.601 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.252 0.748 42 H 0.010 0.990 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 -7.329 -8.592 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C -0.032 4.032 4 C 0.281 3.719 5 O -0.406 6.406 6 N -0.355 5.355 7 C 0.076 3.924 8 C -0.146 4.146 9 C -0.162 4.162 10 C -0.169 4.169 11 C 0.053 3.947 12 H 0.064 0.936 13 N -0.320 5.320 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.567 5.567 18 Si 0.744 3.256 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.029 3.971 23 C -0.180 4.180 24 C 0.336 3.664 25 O -0.407 6.407 26 C -0.214 4.214 27 C -0.187 4.187 28 C -0.187 4.187 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.233 0.767 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.141 0.859 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.681 -7.836 -7.907 21.746 hybrid contribution 0.735 1.051 -0.316 1.321 sum -17.945 -6.785 -8.223 20.873 Atomic orbital electron populations 1.21777 0.78904 1.03853 1.01280 1.47231 1.07031 1.04770 1.73935 1.21330 1.00159 0.86511 0.95208 1.20955 0.78274 0.80983 0.91657 1.90672 1.50973 1.53151 1.45780 1.45889 1.57284 1.23669 1.08688 1.21641 0.94372 0.95849 0.80560 1.22210 0.96372 0.96636 0.99415 1.22355 0.97783 0.95969 1.00134 1.22923 0.93523 0.99928 1.00478 1.21804 0.86086 0.91490 0.95313 0.93648 1.44534 1.01659 1.02436 1.83379 1.19022 0.86507 0.88124 1.41294 0.90545 1.24793 0.97347 0.96130 1.02326 1.69817 1.19317 1.11576 1.55990 0.86101 0.81796 0.79946 0.77793 1.21653 1.21731 1.20809 1.21957 0.92555 0.82427 1.00210 1.23295 0.97897 0.97986 0.98787 1.19683 0.87306 0.84298 0.75073 1.90736 1.13858 1.87044 1.49034 1.22146 1.02474 0.90637 1.06107 1.22944 1.03139 1.00969 0.91601 1.22969 1.00240 0.95046 1.00456 0.92564 0.90634 0.90974 0.87701 0.86917 0.76725 0.92371 0.91462 0.92262 0.92494 0.90744 0.92344 0.93750 0.97244 0.87523 0.91595 0.91693 0.85935 0.87940 0.87832 0.87987 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.01 59.85 0.60 1.26 16 2 N -0.60 -7.05 2.36 -182.96 -0.43 -7.48 16 3 C 0.09 1.13 5.89 -5.19 -0.03 1.10 16 4 C 0.50 7.79 7.05 -10.98 -0.08 7.71 16 5 O -0.53 -9.95 14.31 5.56 0.08 -9.87 16 6 N -0.70 -11.17 5.23 -45.35 -0.24 -11.40 16 7 C 0.16 2.96 0.73 -129.37 -0.09 2.86 16 8 C -0.11 -1.75 5.25 -25.81 -0.14 -1.89 16 9 C -0.12 -1.85 6.83 -25.19 -0.17 -2.03 16 10 C -0.13 -2.33 6.22 -24.87 -0.15 -2.49 16 11 C 0.16 3.23 3.66 -65.60 -0.24 2.99 16 12 H 0.05 0.89 7.98 -51.93 -0.41 0.47 16 13 N -0.60 -14.87 3.03 -161.13 -0.49 -15.36 16 14 C -0.22 -6.02 10.01 -15.06 -0.15 -6.17 16 15 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -27.11 10.07 55.49 0.56 -26.55 16 18 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.15 3.88 5.91 -2.59 -0.02 3.86 16 23 C -0.14 -3.01 5.77 -24.74 -0.14 -3.16 16 24 C 0.55 7.64 7.46 -10.99 -0.08 7.56 16 25 O -0.53 -9.73 15.84 5.55 0.09 -9.64 16 26 C -0.19 -1.94 4.80 -91.77 -0.44 -2.38 16 27 C -0.15 -1.43 10.23 -26.73 -0.27 -1.70 16 28 C -0.15 -1.43 10.04 -26.73 -0.27 -1.70 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.53 6.64 -51.93 -0.35 0.19 16 31 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.11 1.45 7.42 -51.93 -0.39 1.06 16 34 H 0.40 5.53 8.49 -40.82 -0.35 5.18 16 35 H 0.06 0.91 7.40 -51.93 -0.38 0.53 16 36 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.11 3.06 5.82 -51.92 -0.30 2.76 16 44 H 0.07 1.41 7.65 -51.93 -0.40 1.02 16 45 H 0.06 1.46 6.82 -51.93 -0.35 1.11 16 46 H 0.12 0.87 7.26 -51.93 -0.38 0.49 16 47 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.11 1.26 7.67 -51.93 -0.40 0.86 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -34.84 393.12 -9.58 -44.42 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.28 Total: 7.43 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.77 Total: 5.45 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.60 Total: -60.80 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.84 -9.58 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676809217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.067 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds