Wall clock time and date at job start Tue Mar 31 2020 18:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00065 * 2 1 4 4 C 1.50704 * 109.46782 * 269.99811 * 3 2 1 5 5 O 1.21274 * 120.00312 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99606 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99951 * 180.02562 * 6 4 3 8 8 C 1.53580 * 112.24268 * 59.64541 * 7 6 4 9 9 C 1.54223 * 106.67463 * 121.17349 * 8 7 6 10 10 C 1.55571 * 103.95366 * 25.32507 * 9 8 7 11 11 C 1.54777 * 102.83557 * 321.56811 * 10 9 8 12 12 H 1.08996 * 112.61634 * 275.32550 * 11 10 9 13 13 N 1.46974 * 108.68838 * 150.85689 * 11 10 9 14 14 C 1.36944 * 125.57849 * 65.87857 * 13 11 10 15 15 H 1.08008 * 119.99580 * 343.23128 * 14 13 11 16 16 C 1.38807 * 120.00261 * 163.23283 * 14 13 11 17 17 N 1.31616 * 119.99889 * 332.26280 * 16 14 13 18 18 Si 1.86794 * 120.00108 * 152.53554 * 16 14 13 19 19 H 1.48497 * 109.47222 * 179.72574 * 18 16 14 20 20 H 1.48502 * 109.47065 * 299.72646 * 18 16 14 21 21 H 1.48500 * 109.47291 * 59.72544 * 18 16 14 22 22 C 1.47362 * 108.84540 * 246.13575 * 13 11 10 23 23 C 1.54614 * 104.95040 * 24.32586 * 22 13 11 24 24 C 1.34776 * 119.99899 * 179.97438 * 2 1 3 25 25 O 1.21281 * 120.00268 * 180.02562 * 24 2 1 26 26 C 1.50697 * 120.00153 * 0.02562 * 24 2 1 27 27 C 1.53003 * 117.49961 * 248.62500 * 26 24 2 28 28 C 1.52998 * 117.50293 * 180.02562 * 26 24 2 29 29 H 1.09003 * 109.47218 * 89.99948 * 1 2 3 30 30 H 1.09000 * 109.47258 * 210.00056 * 1 2 3 31 31 H 1.08999 * 109.46975 * 330.00632 * 1 2 3 32 32 H 1.09000 * 109.46772 * 150.00105 * 3 2 1 33 33 H 1.08991 * 109.47138 * 29.99698 * 3 2 1 34 34 H 0.97000 * 120.00290 * 359.97438 * 6 4 3 35 35 H 1.08998 * 110.01417 * 240.48124 * 8 7 6 36 36 H 1.09005 * 110.02073 * 1.82376 * 8 7 6 37 37 H 1.09005 * 110.49028 * 143.60545 * 9 8 7 38 38 H 1.09000 * 110.49413 * 266.13977 * 9 8 7 39 39 H 1.09004 * 110.28363 * 203.52408 * 10 9 8 40 40 H 1.09002 * 111.41273 * 80.14009 * 10 9 8 41 41 H 0.97002 * 119.99976 * 354.26304 * 17 16 14 42 42 H 1.09000 * 110.37416 * 143.26571 * 22 13 11 43 43 H 1.09000 * 110.37034 * 265.59656 * 22 13 11 44 44 H 1.09001 * 111.08353 * 205.03203 * 23 22 13 45 45 H 1.08997 * 110.75069 * 81.33802 * 23 22 13 46 46 H 1.09009 * 115.55071 * 34.32892 * 26 24 2 47 47 H 1.08995 * 117.49830 * 359.97438 * 27 26 24 48 48 H 1.09006 * 117.49824 * 145.01710 * 27 26 24 49 49 H 1.09000 * 117.50198 * 214.98516 * 28 26 24 50 50 H 1.09001 * 117.49776 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 8 2.0551 1.0209 -2.3427 6 7 3.1117 2.8509 -1.6671 7 6 3.3554 3.2741 -3.0484 8 6 2.0511 3.4696 -3.8353 9 6 2.0401 4.9347 -4.3168 10 6 3.5458 5.3218 -4.3750 11 6 4.1307 4.6156 -3.1281 12 1 4.0161 5.2064 -2.2194 13 7 5.5386 4.2854 -3.3910 14 6 6.5494 5.1917 -3.5703 15 1 6.3171 6.2227 -3.7932 16 6 7.8726 4.7854 -3.4655 17 7 8.1881 3.7618 -2.7006 18 14 9.2064 5.6960 -4.4042 19 1 10.5245 5.0742 -4.1195 20 1 8.9270 5.6192 -5.8607 21 1 9.2279 7.1186 -3.9786 22 6 5.6833 2.8196 -3.4364 23 6 4.2792 2.2915 -3.8108 24 6 2.1388 -1.1672 0.0005 25 8 3.3517 -1.1673 0.0010 26 6 1.3854 -2.4723 0.0005 27 6 1.4600 -3.3312 1.2646 28 6 2.2074 -3.7627 0.0017 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 3.1499 1.1383 0.5138 33 1 1.6085 2.0283 0.5137 34 1 3.4269 3.3969 -0.9299 35 1 2.0272 2.7953 -4.6913 36 1 1.1936 3.2822 -3.1889 37 1 1.5931 5.0071 -5.3084 38 1 1.5013 5.5649 -3.6093 39 1 3.6614 6.4027 -4.2946 40 1 4.0174 4.9499 -5.2846 41 1 7.5108 3.3439 -2.1461 42 1 6.4115 2.5334 -4.1953 43 1 5.9814 2.4374 -2.4601 44 1 4.1376 1.2699 -3.4582 45 1 4.1159 2.3576 -4.8864 46 1 0.4471 -2.4735 -0.5545 47 1 2.0545 -2.9524 2.0959 48 1 0.5708 -3.8975 1.5415 49 1 1.8101 -4.6130 -0.5525 50 1 3.2932 -3.6677 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676809219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:37 Heat of formation + Delta-G solvation = -11.544195 kcal Electronic energy + Delta-G solvation = -30548.153103 eV Core-core repulsion = 26577.031870 eV Total energy + Delta-G solvation = -3971.121233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.62266 -39.90626 -38.18392 -36.39352 -35.46835 -34.47368 -33.46634 -31.56735 -30.11304 -28.97496 -26.83832 -26.54347 -26.03105 -23.83871 -23.76298 -22.68534 -21.29514 -20.14225 -19.78679 -19.08448 -18.84620 -17.70288 -17.45776 -17.14777 -16.49172 -15.73450 -15.46276 -15.07010 -14.84985 -14.54446 -14.28838 -13.75387 -13.71886 -13.54607 -13.34721 -13.13554 -13.00487 -12.85511 -12.57480 -12.51735 -12.17759 -11.80850 -11.78713 -11.67376 -11.51205 -10.93770 -10.88193 -10.74511 -10.66522 -10.58018 -10.40724 -10.28028 -10.14332 -9.96499 -9.96094 -9.93567 -9.76957 -9.46028 -8.75564 -8.66071 -8.36487 -6.91300 -6.05225 -3.10912 2.30232 2.67132 2.81326 3.43993 3.51532 3.56517 3.65704 3.73981 4.24421 4.51978 4.59746 4.62333 4.70650 4.78013 4.85512 4.97026 4.99744 5.09489 5.20944 5.22894 5.27852 5.30463 5.37228 5.47791 5.51788 5.60993 5.67464 5.69525 5.75187 5.85050 5.89293 6.00963 6.05310 6.14700 6.18269 6.20952 6.31441 6.38112 6.47481 6.63143 6.69462 6.88482 7.00583 7.12599 7.13717 7.16064 7.75267 7.83865 8.04976 8.45167 8.52311 9.05651 9.85597 10.40854 11.26986 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.003158 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.253792 B = 8864.909954 C =10134.015130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.095 3.905 4 C 0.498 3.502 5 O -0.530 6.530 6 N -0.706 5.706 7 C 0.163 3.837 8 C -0.107 4.107 9 C -0.125 4.125 10 C -0.126 4.126 11 C 0.161 3.839 12 H 0.048 0.952 13 N -0.595 5.595 14 C -0.335 4.335 15 H 0.064 0.936 16 C -0.025 4.025 17 N -0.915 5.915 18 Si 1.063 2.937 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.294 1.294 22 C 0.146 3.854 23 C -0.132 4.132 24 C 0.548 3.452 25 O -0.531 6.531 26 C -0.191 4.191 27 C -0.154 4.154 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.269 0.731 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.074 -7.905 7.458 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.329 5.329 3 C -0.032 4.032 4 C 0.282 3.718 5 O -0.406 6.406 6 N -0.357 5.357 7 C 0.076 3.924 8 C -0.146 4.146 9 C -0.163 4.163 10 C -0.166 4.166 11 C 0.053 3.947 12 H 0.065 0.935 13 N -0.320 5.320 14 C -0.463 4.463 15 H 0.082 0.918 16 C -0.227 4.227 17 N -0.556 5.556 18 Si 0.893 3.107 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.221 1.221 22 C 0.021 3.979 23 C -0.172 4.172 24 C 0.337 3.663 25 O -0.407 6.407 26 C -0.212 4.212 27 C -0.191 4.191 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.142 0.858 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.978 -8.330 6.433 20.832 hybrid contribution -1.624 0.490 0.654 1.818 sum -19.602 -7.840 7.087 22.270 Atomic orbital electron populations 1.21835 0.78852 1.03011 1.02424 1.47230 1.07072 1.04743 1.73898 1.21344 1.00236 0.86501 0.95087 1.20996 0.78137 0.80908 0.91748 1.90670 1.50936 1.53181 1.45810 1.45911 1.57407 1.23756 1.08607 1.21620 0.94507 0.95599 0.80655 1.22209 0.96234 0.96661 0.99511 1.22509 0.97689 0.95810 1.00294 1.23020 0.93327 1.00058 1.00204 1.21814 0.86048 0.91361 0.95453 0.93467 1.44557 1.02728 1.01092 1.83633 1.19680 0.86441 0.92234 1.47928 0.91795 1.25714 0.96944 1.00460 0.99580 1.70775 1.36434 1.25499 1.22881 0.83549 0.76271 0.74814 0.76058 1.21159 1.22169 1.22100 1.21484 0.93418 0.84587 0.98426 1.23075 0.96449 0.98388 0.99265 1.19661 0.87286 0.84279 0.75093 1.90736 1.13859 1.87043 1.49036 1.22171 1.02806 0.90683 1.05532 1.22936 1.03211 1.01543 0.91419 1.22964 1.00299 0.95257 0.99975 0.92079 0.90628 0.91064 0.86899 0.87624 0.76599 0.91308 0.92305 0.92242 0.92210 0.92312 0.90722 0.91933 0.93180 0.95835 0.91156 0.91165 0.85759 0.88269 0.87810 0.87869 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.05 59.85 0.60 1.22 16 2 N -0.60 -6.95 2.36 -182.96 -0.43 -7.38 16 3 C 0.10 1.13 5.93 -5.19 -0.03 1.10 16 4 C 0.50 7.72 7.05 -10.98 -0.08 7.64 16 5 O -0.53 -9.85 14.30 5.56 0.08 -9.77 16 6 N -0.71 -11.10 5.23 -45.35 -0.24 -11.34 16 7 C 0.16 2.92 0.74 -129.37 -0.10 2.83 16 8 C -0.11 -1.71 5.24 -25.79 -0.14 -1.85 16 9 C -0.12 -1.84 6.87 -24.72 -0.17 -2.01 16 10 C -0.13 -2.28 6.26 -24.43 -0.15 -2.43 16 11 C 0.16 3.25 3.65 -65.60 -0.24 3.01 16 12 H 0.05 0.96 7.98 -51.93 -0.41 0.54 16 13 N -0.59 -14.83 2.93 -161.29 -0.47 -15.30 16 14 C -0.34 -9.33 9.76 -15.06 -0.15 -9.47 16 15 H 0.06 1.77 7.97 -52.48 -0.42 1.35 16 16 C -0.02 -0.72 5.08 -17.43 -0.09 -0.80 16 17 N -0.92 -28.04 12.93 55.49 0.72 -27.33 16 18 Si 1.06 25.66 30.00 -169.99 -5.10 20.57 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 C 0.15 3.58 5.27 -2.72 -0.01 3.57 16 23 C -0.13 -2.74 5.76 -24.87 -0.14 -2.89 16 24 C 0.55 7.56 7.46 -10.99 -0.08 7.48 16 25 O -0.53 -9.65 15.84 5.56 0.09 -9.56 16 26 C -0.19 -1.89 4.80 -91.77 -0.44 -2.33 16 27 C -0.15 -1.18 10.23 -26.75 -0.27 -1.46 16 28 C -0.15 -1.39 10.04 -26.76 -0.27 -1.66 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.42 6.64 -51.93 -0.34 0.07 16 31 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 32 H 0.11 1.44 7.42 -51.93 -0.39 1.06 16 33 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 34 H 0.40 5.60 8.49 -40.82 -0.35 5.25 16 35 H 0.07 1.15 7.41 -51.93 -0.38 0.76 16 36 H 0.06 0.91 7.40 -51.93 -0.38 0.52 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 41 H 0.27 8.31 6.03 -40.82 -0.25 8.07 16 42 H 0.05 1.35 7.92 -51.93 -0.41 0.94 16 43 H 0.02 0.63 6.82 -51.93 -0.35 0.27 16 44 H 0.07 1.52 6.82 -51.93 -0.35 1.17 16 45 H 0.07 1.42 7.65 -51.93 -0.40 1.03 16 46 H 0.12 0.99 7.26 -51.92 -0.38 0.61 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.11 1.26 7.67 -51.93 -0.40 0.86 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -36.02 393.44 -9.39 -45.41 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.21 Total: 6.82 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.76 Total: 1.94 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.42 Total: -61.34 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.17 Total: -19.33 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.10 Total: 20.57 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.02 -9.39 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676809219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.866 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds