Wall clock time and date at job start Tue Mar 31 2020 18:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00262 * 2 1 4 4 C 1.52996 * 109.47368 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.46978 * 65.00293 * 4 3 2 6 6 C 1.36932 * 119.99539 * 274.46431 * 5 4 3 7 7 H 1.08004 * 119.99978 * 146.16811 * 6 5 4 8 8 C 1.38819 * 120.00327 * 326.16517 * 6 5 4 9 9 N 1.31622 * 119.99761 * 335.31899 * 8 6 5 10 10 Si 1.86796 * 119.99943 * 155.31516 * 8 6 5 11 11 H 1.48498 * 109.47011 * 90.00320 * 10 8 6 12 12 H 1.48497 * 109.47150 * 209.99975 * 10 8 6 13 13 H 1.48501 * 109.47307 * 330.00038 * 10 8 6 14 14 C 1.46498 * 119.99929 * 94.46410 * 5 4 3 15 15 C 1.53000 * 109.47155 * 269.99918 * 14 5 4 16 16 N 1.46494 * 109.47224 * 180.02562 * 15 14 5 17 17 C 1.34782 * 119.99989 * 180.02562 * 16 15 14 18 18 O 1.21595 * 120.00191 * 359.97438 * 17 16 15 19 19 C 1.47521 * 119.99734 * 180.02562 * 17 16 15 20 20 C 1.39802 * 120.06247 * 180.02562 * 19 17 16 21 21 C 1.37607 * 119.92372 * 180.02562 * 20 19 17 22 22 C 1.39221 * 120.07469 * 0.02562 * 21 20 19 23 23 N 1.39046 * 119.93165 * 180.02562 * 22 21 20 24 24 C 1.46501 * 120.00231 * 359.97438 * 23 22 21 25 25 C 1.46499 * 119.99709 * 179.97438 * 23 22 21 26 26 C 1.39221 * 120.13373 * 0.26660 * 22 21 20 27 27 C 1.37603 * 120.06926 * 359.45411 * 26 22 21 28 28 H 1.08993 * 109.47110 * 299.99703 * 1 2 3 29 29 H 1.08996 * 109.47333 * 60.00278 * 1 2 3 30 30 H 1.09003 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47065 * 59.99833 * 3 2 1 32 32 H 1.09004 * 109.47227 * 300.00144 * 3 2 1 33 33 H 1.08994 * 109.47357 * 304.99948 * 4 3 2 34 34 H 1.08999 * 109.47226 * 184.99848 * 4 3 2 35 35 H 0.96998 * 119.99936 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46782 * 150.00207 * 14 5 4 37 37 H 1.08996 * 109.47364 * 30.00013 * 14 5 4 38 38 H 1.09000 * 109.47080 * 59.99666 * 15 14 5 39 39 H 1.09005 * 109.46920 * 300.00191 * 15 14 5 40 40 H 0.96992 * 120.00229 * 359.97438 * 16 15 14 41 41 H 1.07992 * 120.03890 * 359.97438 * 20 19 17 42 42 H 1.08007 * 119.96300 * 179.97438 * 21 20 19 43 43 H 1.08998 * 109.46809 * 90.00263 * 24 23 22 44 44 H 1.08996 * 109.47368 * 209.99967 * 24 23 22 45 45 H 1.08994 * 109.46898 * 330.00384 * 24 23 22 46 46 H 1.09002 * 109.47043 * 60.00399 * 25 23 22 47 47 H 1.09005 * 109.47096 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.47520 * 299.99787 * 25 23 22 49 49 H 1.07999 * 119.96316 * 179.70543 * 26 22 21 50 50 H 1.07997 * 120.03532 * 180.25102 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 4.0102 -0.8003 -1.3640 7 1 3.7919 -1.2692 -2.3121 8 6 4.3249 -1.5807 -0.2599 9 7 5.0414 -1.0743 0.7212 10 14 3.7315 -3.3495 -0.1667 11 1 4.7464 -4.2449 -0.7777 12 1 3.5280 -3.7291 1.2544 13 1 2.4484 -3.4806 -0.9027 14 6 4.3819 1.4028 -2.3815 15 6 3.1635 1.7014 -3.2576 16 7 3.5689 2.5398 -4.3884 17 6 2.6552 2.9313 -5.2987 18 8 1.4945 2.5882 -5.1815 19 6 3.0635 3.7751 -6.4378 20 6 2.1168 4.1824 -7.3824 21 6 2.5009 4.9690 -8.4441 22 6 3.8307 5.3588 -8.5784 23 7 4.2154 6.1542 -9.6521 24 6 3.2221 6.5806 -10.6409 25 6 5.6142 6.5656 -9.7945 26 6 4.7769 4.9498 -7.6426 27 6 4.3980 4.1679 -6.5756 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5685 0.8426 34 1 3.9784 2.1765 0.0902 35 1 5.2610 -1.6195 1.4929 36 1 5.1339 0.8789 -2.9715 37 1 4.7992 2.3382 -2.0087 38 1 2.4114 2.2252 -2.6676 39 1 2.7462 0.7660 -3.6304 40 1 4.4946 2.8138 -4.4818 41 1 1.0854 3.8793 -7.2795 42 1 1.7701 5.2837 -9.1745 43 1 2.7845 7.5293 -10.3302 44 1 3.7042 6.7032 -11.6107 45 1 2.4386 5.8267 -10.7172 46 1 6.2459 5.6816 -9.8820 47 1 5.7231 7.1794 -10.6887 48 1 5.9145 7.1417 -8.9193 49 1 5.8085 5.2498 -7.7521 50 1 5.1317 3.8542 -5.8478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677321802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:35 Heat of formation + Delta-G solvation = -36.947668 kcal Electronic energy + Delta-G solvation = -28663.409728 eV Core-core repulsion = 24691.186917 eV Total energy + Delta-G solvation = -3972.222811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19429 -39.93381 -38.90442 -37.41972 -36.94043 -35.69161 -33.37203 -32.19955 -31.59006 -30.71770 -29.11742 -28.87457 -27.16346 -26.43887 -25.50833 -23.59902 -23.19572 -22.61841 -22.12233 -21.01302 -19.14287 -18.64562 -17.75156 -17.46243 -17.10299 -16.68381 -16.55358 -16.28036 -16.20670 -15.99331 -15.85842 -15.61449 -15.34351 -15.01888 -14.87344 -14.54690 -14.41124 -14.31721 -13.60185 -13.52311 -13.41867 -13.36919 -13.33099 -13.01921 -12.94659 -12.77874 -12.68232 -12.45158 -12.38636 -12.28676 -11.92201 -11.76072 -11.71506 -11.53160 -11.00638 -10.83146 -10.44236 -10.34280 -10.01755 -9.97304 -8.57727 -8.28543 -7.75552 -5.30151 0.08133 0.49373 1.45833 1.50563 1.61494 1.96218 2.17764 2.23854 2.62181 2.99950 3.21081 3.37349 3.73718 3.82212 3.93930 3.99996 4.18370 4.23517 4.30037 4.38863 4.40330 4.42902 4.51263 4.52900 4.57831 4.61527 4.70558 4.72341 4.72940 4.79707 4.80636 4.89836 4.91880 4.93594 4.96432 5.07865 5.12217 5.22691 5.23808 5.33916 5.48687 5.55505 5.73724 5.76507 5.84268 6.27450 6.43732 6.45991 6.64896 6.66669 7.23794 7.31307 7.93351 8.39892 9.21638 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002179 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.401796 B =12844.389814 C =13411.263036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.242 4.242 7 H 0.043 0.957 8 C -0.019 4.019 9 N -0.912 5.912 10 Si 0.943 3.057 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.284 1.284 14 C 0.143 3.857 15 C 0.119 3.881 16 N -0.710 5.710 17 C 0.554 3.446 18 O -0.600 6.600 19 C -0.219 4.219 20 C -0.024 4.024 21 C -0.212 4.212 22 C 0.237 3.763 23 N -0.632 5.632 24 C 0.081 3.919 25 C 0.085 3.915 26 C -0.207 4.207 27 C -0.030 4.030 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.412 0.588 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.151 0.849 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 19.542 -20.566 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.372 4.372 7 H 0.061 0.939 8 C -0.216 4.216 9 N -0.557 5.557 10 Si 0.773 3.227 11 H -0.213 1.213 12 H -0.219 1.219 13 H -0.210 1.210 14 C 0.016 3.984 15 C -0.007 4.007 16 N -0.362 5.362 17 C 0.344 3.656 18 O -0.483 6.483 19 C -0.224 4.224 20 C -0.043 4.043 21 C -0.235 4.235 22 C 0.131 3.869 23 N -0.340 5.340 24 C -0.061 4.061 25 C -0.057 4.057 26 C -0.229 4.229 27 C -0.049 4.049 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.250 0.750 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.168 0.832 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.141 19.185 -20.495 28.074 hybrid contribution -0.579 -0.946 0.406 1.181 sum -0.438 18.240 -20.089 27.138 Atomic orbital electron populations 1.22795 0.82054 1.02453 0.99793 1.88151 1.19141 1.28679 1.95115 1.23327 0.97213 0.83987 0.98052 1.21130 0.89505 0.96746 0.91829 1.43736 1.74582 1.01960 1.10363 1.18836 1.39581 0.82479 0.96281 0.93933 1.25337 0.97661 1.00149 0.98429 1.70060 1.37623 1.37466 1.10583 0.85675 0.78355 0.82350 0.76331 1.21277 1.21936 1.21005 1.21043 0.92916 0.95153 0.89300 1.21914 0.99559 0.92503 0.86753 1.45781 1.12534 1.52314 1.25613 1.18761 0.84753 0.79464 0.82578 1.90715 1.20570 1.59350 1.77643 1.19568 0.96102 1.07918 0.98828 1.21002 0.98877 0.92788 0.91683 1.20762 0.95421 1.05845 1.01446 1.18191 0.92942 0.88433 0.87365 1.46613 1.09928 1.52828 1.24619 1.21925 0.92414 1.00133 0.91625 1.21876 0.80063 1.00513 1.03295 1.20803 1.00231 1.05384 0.96480 1.21241 0.93729 0.93269 0.96693 0.93171 0.94738 0.90082 0.93461 0.95048 0.90727 0.91895 0.94182 0.92711 0.91631 0.93681 0.95096 0.75036 0.86260 0.83728 0.92508 0.89295 0.91087 0.92079 0.88656 0.92054 0.83167 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.39 -18.30 9.96 -148.98 -1.48 -19.78 16 3 C 0.05 2.22 6.28 71.98 0.45 2.67 16 4 C 0.13 6.23 5.83 86.38 0.50 6.74 16 5 N -0.59 -28.74 2.45 -702.00 -1.72 -30.46 16 6 C -0.24 -13.46 8.74 84.04 0.73 -12.72 16 7 H 0.04 2.46 7.94 -2.91 -0.02 2.43 16 8 C -0.02 -1.06 4.95 84.86 0.42 -0.64 16 9 N -0.91 -53.36 11.36 21.65 0.25 -53.12 16 10 Si 0.94 47.37 29.62 68.60 2.03 49.40 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 14 C 0.14 5.63 5.82 86.38 0.50 6.14 16 15 C 0.12 4.62 6.00 86.38 0.52 5.14 16 16 N -0.71 -22.23 5.51 -466.28 -2.57 -24.80 16 17 C 0.55 19.13 7.76 86.69 0.67 19.80 16 18 O -0.60 -26.11 16.34 -4.01 -0.07 -26.18 16 19 C -0.22 -5.90 5.88 -20.08 -0.12 -6.02 16 20 C -0.02 -0.60 9.58 22.50 0.22 -0.38 16 21 C -0.21 -4.08 9.18 22.36 0.21 -3.88 16 22 C 0.24 4.02 6.55 38.47 0.25 4.27 16 23 N -0.63 -7.25 3.39 -747.30 -2.53 -9.78 16 24 C 0.08 0.58 10.14 127.77 1.30 1.87 16 25 C 0.08 0.54 9.38 127.77 1.20 1.74 16 26 C -0.21 -3.43 9.28 22.36 0.21 -3.22 16 27 C -0.03 -0.60 9.53 22.50 0.21 -0.38 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 1.30 6.47 -2.38 -0.02 1.28 16 33 H 0.08 4.05 5.37 -2.39 -0.01 4.04 16 34 H 0.06 2.57 7.84 -2.39 -0.02 2.55 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 37 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 38 H 0.04 1.87 6.47 -2.39 -0.02 1.85 16 39 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.41 9.76 6.49 -92.71 -0.60 9.16 16 41 H 0.12 3.25 7.64 -2.91 -0.02 3.23 16 42 H 0.15 2.12 6.11 -2.91 -0.02 2.10 16 43 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.09 0.28 7.92 -2.39 -0.02 0.26 16 45 H 0.07 0.53 6.17 -2.39 -0.01 0.52 16 46 H 0.06 0.38 7.92 -2.39 -0.02 0.36 16 47 H 0.09 0.22 7.79 -2.38 -0.02 0.20 16 48 H 0.06 0.38 7.94 -2.39 -0.02 0.36 16 49 H 0.15 1.70 6.70 -2.91 -0.02 1.68 16 50 H 0.15 2.21 6.39 -2.91 -0.02 2.19 16 Total: -1.00 -76.25 404.10 2.77 -73.48 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.34 Total: 17.95 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 8.52 Total: 23.30 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.58 Total: -118.16 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.55 Total: -45.96 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -76.25 2.77 -73.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677321802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.532 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds