Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99796 * 2 1 4 4 C 1.52996 * 109.47645 * 269.99913 * 3 2 1 5 5 H 1.09007 * 112.95330 * 72.85981 * 4 3 2 6 6 C 1.53926 * 113.76383 * 204.50646 * 4 3 2 7 7 C 1.53937 * 86.34453 * 138.03936 * 6 4 3 8 8 N 1.47957 * 113.76013 * 301.07135 * 4 3 2 9 9 C 1.46899 * 111.00445 * 108.09724 * 8 4 3 10 10 C 1.50696 * 109.47582 * 170.00020 * 9 8 4 11 11 O 1.21292 * 119.99740 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00382 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00101 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99718 * 359.97438 * 13 12 10 15 15 C 1.38944 * 119.99903 * 179.97438 * 13 12 10 16 16 N 1.31409 * 119.99985 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00099 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46953 * 89.99961 * 17 15 13 19 19 H 1.48496 * 109.47321 * 209.99840 * 17 15 13 20 20 H 1.48497 * 109.46916 * 330.00152 * 17 15 13 21 21 C 1.34779 * 120.00125 * 180.02562 * 2 1 3 22 22 O 1.21286 * 119.99981 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99872 * 359.97438 * 21 2 1 24 24 H 1.09000 * 109.63888 * 59.58838 * 23 21 2 25 25 C 1.53019 * 109.81941 * 299.05304 * 23 21 2 26 26 C 1.50070 * 110.14796 * 190.77926 * 25 23 21 27 27 C 1.29172 * 123.99416 * 17.08522 * 26 25 23 28 28 C 1.50070 * 124.28199 * 359.61667 * 27 26 25 29 29 C 1.53024 * 110.03521 * 17.04512 * 28 27 26 30 30 H 1.08999 * 109.47152 * 269.99236 * 1 2 3 31 31 H 1.09004 * 109.47358 * 29.99928 * 1 2 3 32 32 H 1.09009 * 109.46856 * 149.99770 * 1 2 3 33 33 H 1.08998 * 109.46926 * 30.00489 * 3 2 1 34 34 H 1.09007 * 109.46787 * 149.99871 * 3 2 1 35 35 H 1.09007 * 113.73448 * 252.39908 * 6 4 3 36 36 H 1.09001 * 113.73709 * 23.67715 * 6 4 3 37 37 H 1.08997 * 113.75709 * 90.59584 * 7 6 4 38 38 H 1.08997 * 113.75882 * 221.85266 * 7 6 4 39 39 H 1.09000 * 109.47018 * 289.99985 * 9 8 4 40 40 H 1.08997 * 109.47062 * 49.99628 * 9 8 4 41 41 H 0.97005 * 119.99346 * 359.97438 * 12 10 9 42 42 H 0.97001 * 120.00023 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.35274 * 310.98381 * 25 23 21 44 44 H 1.08997 * 109.35803 * 70.56524 * 25 23 21 45 45 H 1.07999 * 117.96134 * 197.15133 * 26 25 23 46 46 H 1.08001 * 117.75277 * 179.61802 * 27 26 25 47 47 H 1.09002 * 109.35777 * 256.90530 * 28 27 26 48 48 H 1.08998 * 109.35386 * 137.18228 * 28 27 26 49 49 H 1.08995 * 109.64445 * 70.32309 * 29 28 27 50 50 H 1.08999 * 109.63818 * 190.73904 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 1.5533 2.0713 -1.9418 6 6 3.6662 2.6441 -1.5998 7 6 4.0089 1.8248 -2.8571 8 7 3.2270 0.7321 -2.2374 9 6 2.3731 0.0671 -3.2307 10 6 3.2317 -0.7322 -4.1767 11 8 4.4365 -0.7460 -4.0375 12 7 2.6609 -1.4308 -5.1781 13 6 3.4421 -2.1575 -6.0390 14 1 4.5149 -2.1698 -5.9150 15 6 2.8536 -2.8781 -7.0710 16 7 3.6024 -3.5751 -7.8959 17 14 0.9980 -2.8573 -7.2849 18 1 0.6157 -1.7375 -8.1821 19 1 0.5540 -4.1428 -7.8811 20 1 0.3492 -2.6750 -5.9617 21 6 2.1389 -1.1672 -0.0005 22 8 3.3518 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 1 0.7518 -2.5295 -0.8856 25 6 0.5211 -2.5723 1.2582 26 6 -0.0252 -3.9628 1.4010 27 6 0.4445 -4.9910 0.7758 28 6 1.5950 -4.9423 -0.1865 29 6 2.3788 -3.6411 -0.0011 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5139 35 1 3.3988 3.6797 -1.8104 36 1 4.4004 2.5479 -0.7999 37 1 3.5654 2.2180 -3.7719 38 1 5.0710 1.6030 -2.9607 39 1 1.6755 -0.5987 -2.7225 40 1 1.8160 0.8175 -3.7915 41 1 1.6974 -1.4193 -5.2895 42 1 3.1916 -4.0778 -8.6166 43 1 1.1261 -2.3304 2.1320 44 1 -0.3051 -1.8651 1.1863 45 1 -0.8627 -4.1120 2.0663 46 1 -0.0226 -5.9474 0.9588 47 1 1.2150 -4.9930 -1.2068 48 1 2.2547 -5.7906 -0.0040 49 1 2.9139 -3.6677 0.9480 50 1 3.0893 -3.5218 -0.8191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691627906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -8.172300 kcal Electronic energy + Delta-G solvation = -30904.149353 eV Core-core repulsion = 26933.174336 eV Total energy + Delta-G solvation = -3970.975017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60063 -39.61223 -37.90257 -37.43809 -35.41022 -33.89287 -31.75511 -31.60949 -30.88047 -30.53881 -28.70566 -26.67196 -25.77425 -24.26399 -23.42344 -23.29279 -22.16733 -19.47258 -19.33076 -19.10877 -18.27490 -18.03525 -17.01304 -16.37571 -16.05969 -15.81792 -15.66447 -15.33368 -14.79368 -14.47212 -14.26194 -13.97993 -13.74194 -13.64416 -13.33941 -13.21127 -13.06462 -12.85736 -12.67789 -12.47574 -12.40345 -12.23159 -12.12310 -12.06631 -11.60594 -11.58664 -11.29757 -11.13403 -10.95606 -10.77014 -10.69913 -10.58156 -10.48797 -10.35299 -9.93343 -9.51416 -9.36717 -9.12029 -8.80084 -8.38582 -8.17427 -8.11279 -6.26464 -3.77187 2.17065 2.90213 3.02403 3.03012 3.07070 3.15370 3.80932 4.03116 4.13050 4.43039 4.56326 4.58636 4.76253 4.80957 4.86991 4.90305 5.02582 5.09822 5.14002 5.23584 5.24264 5.27401 5.30265 5.36938 5.41755 5.50009 5.52145 5.54495 5.59200 5.61680 5.76449 5.78960 5.82333 5.84226 5.90643 5.96089 5.99593 6.15683 6.30395 6.34972 6.38971 6.52552 6.57246 6.76296 6.82152 7.28931 7.48886 7.63768 8.19910 8.46183 8.65876 9.00933 9.47734 9.90512 10.87102 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.004864 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.116185 B = 5755.728522 C = 7940.531390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.620 5.620 3 C 0.140 3.860 4 C 0.004 3.996 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.017 3.983 8 N -0.425 5.425 9 C 0.014 3.986 10 C 0.456 3.544 11 O -0.553 6.553 12 N -0.596 5.596 13 C -0.300 4.300 14 H 0.119 0.881 15 C 0.041 3.959 16 N -0.884 5.884 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.271 1.271 21 C 0.517 3.483 22 O -0.497 6.497 23 C -0.106 4.106 24 H 0.094 0.906 25 C -0.085 4.085 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.096 4.096 29 C -0.099 4.099 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.368 0.632 42 H 0.272 0.728 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 7.641 19.033 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C 0.017 3.983 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.176 4.176 7 C -0.112 4.112 8 N -0.147 5.147 9 C -0.118 4.118 10 C 0.242 3.758 11 O -0.433 6.433 12 N -0.236 5.236 13 C -0.429 4.429 14 H 0.136 0.864 15 C -0.162 4.162 16 N -0.524 5.524 17 Si 0.704 3.296 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.304 3.696 22 O -0.369 6.369 23 C -0.127 4.127 24 H 0.112 0.888 25 C -0.122 4.122 26 C -0.181 4.181 27 C -0.165 4.165 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.200 0.800 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.497 6.901 19.262 23.469 hybrid contribution -2.420 0.357 -1.008 2.645 sum -13.916 7.257 18.254 24.074 Atomic orbital electron populations 1.21903 0.80431 1.02992 1.01331 1.47716 1.06175 1.06091 1.75559 1.21331 0.97826 0.84330 0.94855 1.23978 0.96352 0.93774 0.96604 0.90961 1.23371 0.97238 0.97426 0.99520 1.23696 1.01852 0.90612 0.95025 1.68522 1.13914 1.17249 1.15050 1.22427 0.96112 0.98647 0.94656 1.19598 0.88945 0.84182 0.83115 1.90575 1.14380 1.65338 1.73040 1.42218 1.07938 1.45295 1.28134 1.19418 0.94172 1.23293 1.06002 0.86354 1.25004 0.98114 0.96819 0.96220 1.69621 1.35210 1.30595 1.17006 0.86707 0.85615 0.78738 0.78530 1.19745 1.20174 1.19637 1.20463 0.88157 0.84702 0.76247 1.90772 1.13399 1.86632 1.46130 1.21365 0.98148 0.93383 0.99823 0.88837 1.20589 0.98913 0.95680 0.97050 1.21876 1.00584 0.94432 1.01161 1.22082 0.97989 0.98297 0.98100 1.20536 0.95585 0.98364 0.98810 1.21411 0.96868 0.91737 1.03713 0.92624 0.91493 0.90995 0.90690 0.89264 0.91365 0.89059 0.92021 0.88762 0.90181 0.93462 0.79990 0.91719 0.90733 0.90151 0.87882 0.88103 0.90420 0.90581 0.91412 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 8.82 59.85 0.53 1.10 16 2 N -0.62 -6.98 2.85 -181.57 -0.52 -7.50 16 3 C 0.14 1.53 5.56 -4.04 -0.02 1.51 16 4 C 0.00 0.05 3.57 -66.66 -0.24 -0.19 16 5 H 0.07 0.79 7.80 -51.93 -0.40 0.38 16 6 C -0.14 -1.61 7.84 -25.80 -0.20 -1.82 16 7 C 0.02 0.27 6.75 -2.76 -0.02 0.25 16 8 N -0.42 -7.31 4.71 -232.17 -1.09 -8.41 16 9 C 0.01 0.25 5.31 -4.98 -0.03 0.23 16 10 C 0.46 10.99 7.59 -10.99 -0.08 10.91 16 11 O -0.55 -15.70 15.13 5.55 0.08 -15.62 16 12 N -0.60 -14.76 5.09 -10.97 -0.06 -14.82 16 13 C -0.30 -8.72 10.16 -14.94 -0.15 -8.87 16 14 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -26.31 13.96 55.50 0.77 -25.53 16 17 Si 0.88 19.72 27.74 -169.99 -4.71 15.01 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.55 6.52 56.52 0.37 -5.19 16 21 C 0.52 7.51 6.29 -10.99 -0.07 7.44 16 22 O -0.50 -9.55 14.91 5.55 0.08 -9.47 16 23 C -0.11 -1.31 1.74 -91.56 -0.16 -1.47 16 24 H 0.09 1.14 7.37 -51.93 -0.38 0.76 16 25 C -0.09 -0.80 4.97 -28.18 -0.14 -0.94 16 26 C -0.16 -1.50 9.80 -35.83 -0.35 -1.85 16 27 C -0.15 -1.47 9.78 -35.83 -0.35 -1.82 16 28 C -0.10 -1.12 6.12 -28.18 -0.17 -1.29 16 29 C -0.10 -1.38 4.69 -26.51 -0.12 -1.50 16 30 H 0.06 0.32 7.22 -51.93 -0.37 -0.06 16 31 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.07 0.53 5.92 -51.92 -0.31 0.22 16 33 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.09 1.17 7.19 -51.92 -0.37 0.79 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.08 7.94 -51.93 -0.41 0.66 16 37 H 0.06 0.96 7.78 -51.93 -0.40 0.56 16 38 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 39 H 0.08 1.37 7.78 -51.93 -0.40 0.97 16 40 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 41 H 0.37 8.04 5.76 -40.82 -0.24 7.80 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.74 8.10 -51.93 -0.42 0.31 16 44 H 0.08 0.59 5.03 -51.93 -0.26 0.33 16 45 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 46 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 50 H 0.08 1.40 7.91 -51.93 -0.41 0.99 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -36.21 391.68 -9.36 -45.57 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -8.14 Total: 12.15 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.68 Total: 2.72 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.89 Total: -56.26 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.21 -9.36 -45.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691627906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.393 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds