Wall clock time and date at job start Tue Mar 31 2020 18:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99813 * 2 1 4 4 O 1.21289 * 119.99916 * 4.28848 * 3 2 1 5 5 C 1.50701 * 120.00072 * 184.28741 * 3 2 1 6 6 H 1.08995 * 109.63640 * 315.02058 * 5 3 2 7 7 C 1.53023 * 109.64036 * 75.44260 * 5 3 2 8 8 C 1.50072 * 110.14434 * 169.11991 * 7 5 3 9 9 C 1.29446 * 124.07499 * 342.86832 * 8 7 5 10 10 C 1.50061 * 124.07517 * 0.49166 * 9 8 7 11 11 C 1.53041 * 110.14457 * 342.83112 * 10 9 8 12 12 C 1.46500 * 120.00088 * 180.02562 * 2 1 3 13 13 H 1.09001 * 110.27044 * 175.48880 * 12 2 1 14 14 C 1.54597 * 110.30692 * 297.67442 * 12 2 1 15 15 C 1.54931 * 102.91953 * 96.96308 * 14 12 2 16 16 N 1.48538 * 103.22842 * 37.41278 * 15 14 12 17 17 C 1.46903 * 111.00090 * 200.28113 * 16 15 14 18 18 C 1.50703 * 109.47039 * 287.39611 * 17 16 15 19 19 O 1.21299 * 119.99865 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00333 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00341 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99629 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99939 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99946 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99713 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47065 * 60.00161 * 25 23 21 27 27 H 1.48503 * 109.46820 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47552 * 299.99678 * 25 23 21 29 29 C 1.47899 * 105.81762 * 320.79024 * 16 15 14 30 30 H 1.08999 * 109.47499 * 94.74432 * 1 2 3 31 31 H 1.08996 * 109.47382 * 334.73579 * 1 2 3 32 32 H 1.09006 * 109.46877 * 214.73843 * 1 2 3 33 33 H 1.09002 * 109.35675 * 289.32434 * 7 5 3 34 34 H 1.08998 * 109.35974 * 48.91615 * 7 5 3 35 35 H 1.07998 * 117.95958 * 162.84384 * 8 7 5 36 36 H 1.08001 * 117.95878 * 180.46723 * 9 8 7 37 37 H 1.09001 * 109.36087 * 103.05712 * 10 9 8 38 38 H 1.08998 * 109.35824 * 222.77557 * 10 9 8 39 39 H 1.08999 * 109.65535 * 289.78187 * 11 10 9 40 40 H 1.08990 * 109.63936 * 169.14182 * 11 10 9 41 41 H 1.09003 * 110.72123 * 215.32106 * 14 12 2 42 42 H 1.09004 * 110.72674 * 338.60503 * 14 12 2 43 43 H 1.09003 * 110.66904 * 278.98100 * 15 14 12 44 44 H 1.09000 * 110.80886 * 155.91763 * 15 14 12 45 45 H 1.09003 * 109.47014 * 47.38825 * 17 16 15 46 46 H 1.08995 * 109.47368 * 167.39475 * 17 16 15 47 47 H 0.97008 * 119.99618 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00053 * 179.97438 * 24 23 21 49 49 H 1.08991 * 109.92405 * 265.97855 * 29 16 15 50 50 H 1.09004 * 110.07525 * 144.77455 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5349 2.2161 0.0785 5 6 3.6427 1.1691 -0.0976 6 1 4.0544 0.4168 0.5752 7 6 4.0652 0.8599 -1.5354 8 6 5.5335 1.1168 -1.7093 9 6 6.2476 1.8244 -0.8937 10 6 5.7091 2.4779 0.3452 11 6 4.1820 2.5548 0.2793 12 6 2.1975 -1.2687 -0.0006 13 1 3.2691 -1.0860 -0.0809 14 6 1.8826 -2.0706 1.2831 15 6 0.7739 -3.0477 0.8179 16 7 1.1944 -3.4076 -0.5605 17 6 0.0619 -3.9295 -1.3371 18 6 -0.2872 -5.3120 -0.8492 19 8 0.3455 -5.8134 0.0561 20 7 -1.3025 -5.9912 -1.4186 21 6 -1.6204 -7.2487 -0.9744 22 1 -1.0571 -7.6950 -0.1684 23 6 -2.6668 -7.9491 -1.5620 24 7 -3.3520 -7.4061 -2.5431 25 14 -3.0995 -9.6627 -0.9572 26 1 -3.4707 -9.6015 0.4794 27 1 -4.2448 -10.1900 -1.7418 28 1 -1.9276 -10.5586 -1.1280 29 6 1.7190 -2.1617 -1.1603 30 1 -0.3634 -0.0850 -1.0241 31 1 -0.3634 0.9293 0.4386 32 1 -0.3633 -0.8446 0.5856 33 1 3.8526 -0.1859 -1.7575 34 1 3.5038 1.4943 -2.2214 35 1 6.0251 0.6841 -2.5680 36 1 7.2961 1.9520 -1.1187 37 1 6.0045 1.8959 1.2183 38 1 6.1162 3.4856 0.4283 39 1 3.8838 3.2819 -0.4759 40 1 3.7878 2.8494 1.2518 41 1 2.7623 -2.6183 1.6213 42 1 1.5117 -1.4118 2.0683 43 1 -0.1965 -2.5512 0.8067 44 1 0.7448 -3.9319 1.4546 45 1 -0.7984 -3.2720 -1.2116 46 1 0.3343 -3.9744 -2.3915 47 1 -1.8082 -5.5903 -2.1429 48 1 -4.0822 -7.8952 -2.9535 49 1 0.9297 -1.6563 -1.7167 50 1 2.5539 -2.3883 -1.8234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698555133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:00 Heat of formation + Delta-G solvation = -45.313242 kcal Electronic energy + Delta-G solvation = -29613.931635 eV Core-core repulsion = 25641.346066 eV Total energy + Delta-G solvation = -3972.585569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94228 -39.21814 -38.02564 -37.55629 -35.02831 -33.84776 -31.84178 -31.45791 -31.14780 -30.95586 -28.82702 -27.48722 -26.39584 -24.26278 -23.90942 -22.93560 -21.54026 -21.16939 -19.33926 -18.99002 -18.29015 -17.92888 -17.54041 -16.64145 -16.19418 -15.87976 -15.61491 -15.12622 -14.93843 -14.51118 -14.35435 -14.26807 -13.97090 -13.81817 -13.69068 -13.35637 -13.14895 -12.95572 -12.65956 -12.61626 -12.48814 -12.39949 -12.14106 -11.99739 -11.79531 -11.50332 -11.43057 -11.19860 -11.16259 -11.12059 -10.95660 -10.77854 -10.70886 -10.45142 -10.22333 -9.85214 -9.49455 -9.33816 -8.88040 -8.52163 -8.02483 -7.95226 -6.42404 -3.83283 1.94992 2.38708 2.73078 3.19239 3.25085 3.29245 3.88914 3.94416 4.12177 4.26514 4.32844 4.41317 4.44063 4.53035 4.69977 4.84178 4.87449 4.95733 5.05626 5.09718 5.13052 5.19819 5.23051 5.28603 5.29161 5.33171 5.39214 5.46872 5.52503 5.57785 5.62891 5.67015 5.71247 5.77546 5.83073 5.84548 5.88291 5.96320 6.07125 6.24048 6.26683 6.29752 6.33643 6.59595 7.03625 7.13887 7.18201 7.54159 7.95319 8.05053 8.60953 9.17367 9.53581 10.05497 10.75313 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.002162 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.265701 B =12948.638507 C =13218.490042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.520 3.480 4 O -0.541 6.541 5 C -0.109 4.109 6 H 0.097 0.903 7 C -0.082 4.082 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.093 4.093 11 C -0.099 4.099 12 C 0.121 3.879 13 H 0.106 0.894 14 C -0.135 4.135 15 C 0.038 3.962 16 N -0.487 5.487 17 C 0.037 3.963 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.023 3.977 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.053 0.947 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.467 19.099 2.324 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.339 5.339 3 C 0.308 3.692 4 O -0.418 6.418 5 C -0.130 4.130 6 H 0.116 0.884 7 C -0.119 4.119 8 C -0.171 4.171 9 C -0.174 4.174 10 C -0.130 4.130 11 C -0.137 4.137 12 C 0.017 3.983 13 H 0.124 0.876 14 C -0.174 4.174 15 C -0.089 4.089 16 N -0.211 5.211 17 C -0.095 4.095 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.106 4.106 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.775 18.816 2.854 24.093 hybrid contribution -1.302 -0.209 -0.480 1.403 sum 13.473 18.608 2.374 23.096 Atomic orbital electron populations 1.21776 0.79401 1.03705 1.01934 1.48004 1.06971 1.05778 1.73109 1.20657 0.89938 0.83086 0.75487 1.90685 1.70390 1.31127 1.49600 1.21428 0.91665 1.00603 0.99288 0.88446 1.20444 0.94359 1.02533 0.94586 1.21980 0.95220 0.99870 0.99980 1.22081 0.99672 0.98859 0.96762 1.20505 0.95165 1.00791 0.96516 1.21429 0.94403 0.95079 1.02739 1.22215 0.96982 0.83003 0.96085 0.87597 1.22935 1.00536 0.97580 0.96327 1.23393 0.95325 0.99059 0.91146 1.64519 1.30382 1.24401 1.01783 1.22067 0.92402 0.96377 0.98620 1.19672 0.83601 0.87221 0.86485 1.90508 1.53369 1.70101 1.32085 1.41859 1.29076 1.15880 1.33407 1.19636 1.14278 0.91355 1.17540 0.87984 1.25259 0.96326 1.00178 0.96211 1.69601 1.21693 1.38846 1.24243 0.85920 0.77970 0.81686 0.78658 1.19938 1.21004 1.19885 1.23278 1.00688 0.90211 0.96457 0.92709 0.90168 0.90759 0.90095 0.90264 0.87415 0.87801 0.90681 0.90680 0.90866 0.91047 0.89354 0.90601 0.94101 0.88106 0.93291 0.89367 0.77544 0.91834 0.92920 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 9.45 59.85 0.57 1.36 16 2 N -0.61 -6.37 2.75 -172.38 -0.47 -6.85 16 3 C 0.52 5.89 6.87 -10.98 -0.08 5.82 16 4 O -0.54 -7.96 15.61 5.55 0.09 -7.87 16 5 C -0.11 -0.93 1.69 -91.55 -0.15 -1.09 16 6 H 0.10 0.74 6.81 -51.93 -0.35 0.39 16 7 C -0.08 -0.64 5.18 -28.17 -0.15 -0.78 16 8 C -0.15 -1.09 9.80 -35.90 -0.35 -1.44 16 9 C -0.16 -1.06 9.80 -35.90 -0.35 -1.41 16 10 C -0.09 -0.61 6.12 -28.17 -0.17 -0.78 16 11 C -0.10 -0.83 4.62 -26.51 -0.12 -0.95 16 12 C 0.12 1.19 2.75 -66.58 -0.18 1.01 16 13 H 0.11 0.87 4.66 -51.93 -0.24 0.63 16 14 C -0.13 -1.47 6.28 -24.87 -0.16 -1.62 16 15 C 0.04 0.55 5.57 -1.90 -0.01 0.54 16 16 N -0.49 -7.46 4.91 -231.89 -1.14 -8.59 16 17 C 0.04 0.63 5.19 -4.97 -0.03 0.61 16 18 C 0.45 10.23 7.61 -10.99 -0.08 10.15 16 19 O -0.58 -15.18 14.64 5.54 0.08 -15.10 16 20 N -0.57 -14.10 5.29 -10.96 -0.06 -14.15 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 25 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.02 0.26 6.13 -2.76 -0.02 0.24 16 30 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 31 H 0.08 0.91 7.23 -51.93 -0.38 0.54 16 32 H 0.07 0.79 5.09 -51.93 -0.26 0.52 16 33 H 0.08 0.58 6.71 -51.93 -0.35 0.23 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 43 H 0.04 0.57 5.67 -51.93 -0.29 0.27 16 44 H 0.10 1.76 7.10 -51.93 -0.37 1.39 16 45 H 0.05 0.76 7.83 -51.93 -0.41 0.36 16 46 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.05 0.60 6.43 -51.93 -0.33 0.26 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -32.15 387.01 -9.35 -41.50 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.85 Total: 9.23 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.53 Total: 3.76 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.95 Total: -53.24 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.17 Total: -22.97 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.15 -9.35 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.810 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds