Wall clock time and date at job start Tue Mar 31 2020 18:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99813 * 2 1 4 4 O 1.21289 * 119.99916 * 4.28848 * 3 2 1 5 5 C 1.50701 * 120.00072 * 184.28741 * 3 2 1 6 6 H 1.08995 * 109.63640 * 315.02058 * 5 3 2 7 7 C 1.53023 * 109.64036 * 75.44260 * 5 3 2 8 8 C 1.50072 * 110.14434 * 169.11991 * 7 5 3 9 9 C 1.29446 * 124.07499 * 342.86832 * 8 7 5 10 10 C 1.50061 * 124.07517 * 0.49166 * 9 8 7 11 11 C 1.53041 * 110.14457 * 342.83112 * 10 9 8 12 12 C 1.46500 * 120.00088 * 180.02562 * 2 1 3 13 13 H 1.09001 * 110.27044 * 175.48880 * 12 2 1 14 14 C 1.54597 * 110.30692 * 297.67442 * 12 2 1 15 15 C 1.54931 * 102.91953 * 96.96308 * 14 12 2 16 16 N 1.48538 * 103.22842 * 37.41278 * 15 14 12 17 17 C 1.46903 * 111.00090 * 200.28113 * 16 15 14 18 18 C 1.50703 * 109.47039 * 287.39611 * 17 16 15 19 19 O 1.21299 * 119.99865 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00333 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00341 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99629 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99939 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99946 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99713 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47065 * 60.00161 * 25 23 21 27 27 H 1.48503 * 109.46820 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47552 * 299.99678 * 25 23 21 29 29 C 1.47899 * 105.81762 * 320.79024 * 16 15 14 30 30 H 1.08999 * 109.47499 * 94.74432 * 1 2 3 31 31 H 1.08996 * 109.47382 * 334.73579 * 1 2 3 32 32 H 1.09006 * 109.46877 * 214.73843 * 1 2 3 33 33 H 1.09002 * 109.35675 * 289.32434 * 7 5 3 34 34 H 1.08998 * 109.35974 * 48.91615 * 7 5 3 35 35 H 1.07998 * 117.95958 * 162.84384 * 8 7 5 36 36 H 1.08001 * 117.95878 * 180.46723 * 9 8 7 37 37 H 1.09001 * 109.36087 * 103.05712 * 10 9 8 38 38 H 1.08998 * 109.35824 * 222.77557 * 10 9 8 39 39 H 1.08999 * 109.65535 * 289.78187 * 11 10 9 40 40 H 1.08990 * 109.63936 * 169.14182 * 11 10 9 41 41 H 1.09003 * 110.72123 * 215.32106 * 14 12 2 42 42 H 1.09004 * 110.72674 * 338.60503 * 14 12 2 43 43 H 1.09003 * 110.66904 * 278.98100 * 15 14 12 44 44 H 1.09000 * 110.80886 * 155.91763 * 15 14 12 45 45 H 1.09003 * 109.47014 * 47.38825 * 17 16 15 46 46 H 1.08995 * 109.47368 * 167.39475 * 17 16 15 47 47 H 0.97008 * 119.99618 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00053 * 179.97438 * 24 23 21 49 49 H 1.08991 * 109.92405 * 265.97855 * 29 16 15 50 50 H 1.09004 * 110.07525 * 144.77455 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5349 2.2161 0.0785 5 6 3.6427 1.1691 -0.0976 6 1 4.0544 0.4168 0.5752 7 6 4.0652 0.8599 -1.5354 8 6 5.5335 1.1168 -1.7093 9 6 6.2476 1.8244 -0.8937 10 6 5.7091 2.4779 0.3452 11 6 4.1820 2.5548 0.2793 12 6 2.1975 -1.2687 -0.0006 13 1 3.2691 -1.0860 -0.0809 14 6 1.8826 -2.0706 1.2831 15 6 0.7739 -3.0477 0.8179 16 7 1.1944 -3.4076 -0.5605 17 6 0.0619 -3.9295 -1.3371 18 6 -0.2872 -5.3120 -0.8492 19 8 0.3455 -5.8134 0.0561 20 7 -1.3025 -5.9912 -1.4186 21 6 -1.6204 -7.2487 -0.9744 22 1 -1.0571 -7.6950 -0.1684 23 6 -2.6668 -7.9491 -1.5620 24 7 -3.3520 -7.4061 -2.5431 25 14 -3.0995 -9.6627 -0.9572 26 1 -3.4707 -9.6015 0.4794 27 1 -4.2448 -10.1900 -1.7418 28 1 -1.9276 -10.5586 -1.1280 29 6 1.7190 -2.1617 -1.1603 30 1 -0.3634 -0.0850 -1.0241 31 1 -0.3634 0.9293 0.4386 32 1 -0.3633 -0.8446 0.5856 33 1 3.8526 -0.1859 -1.7575 34 1 3.5038 1.4943 -2.2214 35 1 6.0251 0.6841 -2.5680 36 1 7.2961 1.9520 -1.1187 37 1 6.0045 1.8959 1.2183 38 1 6.1162 3.4856 0.4283 39 1 3.8838 3.2819 -0.4759 40 1 3.7878 2.8494 1.2518 41 1 2.7623 -2.6183 1.6213 42 1 1.5117 -1.4118 2.0683 43 1 -0.1965 -2.5512 0.8067 44 1 0.7448 -3.9319 1.4546 45 1 -0.7984 -3.2720 -1.2116 46 1 0.3343 -3.9744 -2.3915 47 1 -1.8082 -5.5903 -2.1429 48 1 -4.0822 -7.8952 -2.9535 49 1 0.9297 -1.6563 -1.7167 50 1 2.5539 -2.3883 -1.8234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698555133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:59 Heat of formation + Delta-G solvation = -66.726004 kcal Electronic energy + Delta-G solvation = -29614.860162 eV Core-core repulsion = 25641.346066 eV Total energy + Delta-G solvation = -3973.514096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81812 -40.47096 -39.34451 -38.50686 -36.23384 -35.70679 -33.29480 -32.48154 -32.26372 -31.71277 -29.80034 -28.57765 -27.71975 -25.97868 -24.55384 -23.59921 -22.54771 -22.24119 -21.00569 -19.95886 -19.78723 -18.93234 -18.43119 -17.70146 -17.49240 -16.80700 -16.56936 -16.41973 -16.25734 -16.12771 -15.68635 -15.42017 -15.01640 -14.70553 -14.58467 -14.35512 -14.22475 -13.97174 -13.77305 -13.61409 -13.45856 -13.20804 -13.18330 -13.13848 -13.04671 -12.92347 -12.77317 -12.42684 -12.37022 -12.20949 -12.11516 -12.04263 -11.77205 -11.63899 -11.46283 -11.32435 -10.70677 -10.30114 -9.99233 -9.84571 -9.80044 -9.27523 -8.45157 -5.93559 1.40275 1.41980 1.43644 1.52509 1.53033 1.87833 2.07982 2.29377 2.82611 3.21539 3.32880 3.43675 3.49610 3.69700 3.72348 3.81518 3.99785 4.09902 4.18505 4.25772 4.30507 4.32748 4.40723 4.42797 4.44919 4.47931 4.50342 4.54257 4.62947 4.64781 4.71647 4.83399 4.86447 4.93953 4.97601 5.03039 5.07740 5.13326 5.13805 5.26935 5.33031 5.39349 5.42041 5.79964 5.84275 5.94413 6.09030 6.09295 6.31165 6.62364 7.07925 7.14781 7.58732 8.14692 8.72051 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.002162 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.265701 B =12948.638507 C =13218.490042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.519 3.481 4 O -0.580 6.580 5 C -0.104 4.104 6 H 0.114 0.886 7 C -0.079 4.079 8 C -0.162 4.162 9 C -0.157 4.157 10 C -0.090 4.090 11 C -0.098 4.098 12 C 0.131 3.869 13 H 0.132 0.868 14 C -0.124 4.124 15 C 0.036 3.964 16 N -0.506 5.506 17 C 0.050 3.950 18 C 0.443 3.557 19 O -0.614 6.614 20 N -0.577 5.577 21 C -0.330 4.330 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.272 1.272 29 C 0.025 3.975 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.058 0.942 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.884 19.543 1.886 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C 0.309 3.691 4 O -0.459 6.459 5 C -0.125 4.125 6 H 0.132 0.868 7 C -0.116 4.116 8 C -0.179 4.179 9 C -0.175 4.175 10 C -0.127 4.127 11 C -0.136 4.136 12 C 0.027 3.973 13 H 0.149 0.851 14 C -0.163 4.163 15 C -0.091 4.091 16 N -0.230 5.230 17 C -0.082 4.082 18 C 0.230 3.770 19 O -0.499 6.499 20 N -0.215 5.215 21 C -0.460 4.460 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.103 4.103 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.127 0.873 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.200 19.270 2.400 25.289 hybrid contribution -1.727 -0.295 -0.317 1.780 sum 14.473 18.975 2.084 23.956 Atomic orbital electron populations 1.21749 0.79778 1.03202 1.02114 1.48048 1.06877 1.05943 1.72519 1.21156 0.91025 0.82519 0.74446 1.90671 1.71372 1.32477 1.51403 1.21465 0.89498 1.01190 1.00375 0.86780 1.20426 0.94842 1.02857 0.93503 1.22050 0.94753 1.00483 1.00663 1.22255 1.00406 0.98294 0.96566 1.20514 0.93524 1.01641 0.97033 1.21397 0.95887 0.94625 1.01680 1.22220 0.98107 0.82153 0.94800 0.85089 1.22868 0.99499 0.96927 0.96999 1.23305 0.96962 0.98304 0.90546 1.64456 1.29585 1.26853 1.02120 1.21912 0.93991 0.92715 0.99566 1.20740 0.82025 0.88981 0.85205 1.90483 1.54276 1.71611 1.33557 1.41942 1.30005 1.15580 1.33929 1.19602 1.15304 0.93025 1.18069 0.90303 1.26024 0.95712 1.03538 0.96132 1.69665 1.21859 1.40092 1.24656 0.85007 0.77942 0.77262 0.78252 1.19745 1.19638 1.19685 1.23348 1.01245 0.88711 0.96993 0.92281 0.91139 0.90661 0.89100 0.91435 0.86363 0.86476 0.89582 0.89789 0.92516 0.91901 0.88587 0.89751 0.93882 0.91938 0.91514 0.87319 0.77128 0.91386 0.92379 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 9.45 127.77 1.21 2.72 16 2 N -0.60 -11.56 2.75 -817.67 -2.25 -13.80 16 3 C 0.52 11.06 6.87 87.66 0.60 11.67 16 4 O -0.58 -16.91 15.61 -3.06 -0.05 -16.96 16 5 C -0.10 -1.58 1.69 -11.40 -0.02 -1.60 16 6 H 0.11 1.36 6.81 -2.39 -0.02 1.35 16 7 C -0.08 -1.05 5.18 29.66 0.15 -0.89 16 8 C -0.16 -1.89 9.80 27.04 0.27 -1.63 16 9 C -0.16 -1.73 9.80 27.03 0.27 -1.46 16 10 C -0.09 -0.98 6.12 29.66 0.18 -0.80 16 11 C -0.10 -1.53 4.62 30.74 0.14 -1.39 16 12 C 0.13 2.22 2.75 45.87 0.13 2.35 16 13 H 0.13 1.64 4.66 -2.39 -0.01 1.63 16 14 C -0.12 -2.46 6.28 31.80 0.20 -2.26 16 15 C 0.04 1.03 5.57 86.65 0.48 1.51 16 16 N -0.51 -14.76 4.91 -887.58 -4.35 -19.12 16 17 C 0.05 1.64 5.19 85.56 0.44 2.08 16 18 C 0.44 20.61 7.61 87.66 0.67 21.28 16 19 O -0.61 -33.15 14.64 -3.09 -0.05 -33.19 16 20 N -0.58 -29.26 5.29 -306.98 -1.62 -30.88 16 21 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 25 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 29 C 0.03 0.51 6.13 86.44 0.53 1.04 16 30 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 31 H 0.07 1.59 7.23 -2.39 -0.02 1.57 16 32 H 0.07 1.51 5.09 -2.38 -0.01 1.50 16 33 H 0.09 1.00 6.71 -2.39 -0.02 0.99 16 34 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 40 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 43 H 0.04 1.18 5.67 -2.39 -0.01 1.17 16 44 H 0.06 2.25 7.10 -2.39 -0.02 2.24 16 45 H 0.07 1.98 7.83 -2.39 -0.02 1.96 16 46 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 47 H 0.40 19.08 7.90 -92.70 -0.73 18.34 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 49 H 0.06 1.14 6.43 -2.39 -0.02 1.12 16 50 H 0.10 1.79 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -70.91 387.01 0.74 -70.17 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.22 Total: 33.79 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.53 Total: 14.50 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -7.94 Total: -113.12 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.09 Total: -50.15 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.91 0.74 -70.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.448 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds