Wall clock time and date at job start Tue Mar 31 2020 18:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 119.99987 * 2 1 4 4 O 1.21287 * 119.99825 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99999 * 0.02562 * 3 2 1 6 6 H 1.09005 * 109.81185 * 59.47444 * 5 3 2 7 7 C 1.53018 * 109.64184 * 298.94135 * 5 3 2 8 8 C 1.50072 * 110.09204 * 190.68665 * 7 5 3 9 9 C 1.29443 * 124.07412 * 17.59192 * 8 7 5 10 10 C 1.50070 * 124.07366 * 359.00582 * 9 8 7 11 11 C 1.53031 * 110.14643 * 17.39440 * 10 9 8 12 12 C 1.46504 * 119.99823 * 180.02562 * 2 1 3 13 13 H 1.09004 * 110.28386 * 179.32435 * 12 2 1 14 14 C 1.54259 * 110.32721 * 301.45269 * 12 2 1 15 15 C 1.54378 * 105.06004 * 118.89636 * 14 12 2 16 16 N 1.48557 * 104.59372 * 23.85746 * 15 14 12 17 17 C 1.46901 * 110.99739 * 200.96082 * 16 15 14 18 18 C 1.50698 * 109.46937 * 290.12381 * 17 16 15 19 19 O 1.21290 * 120.00262 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00201 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00502 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99832 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00313 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99912 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47177 * 60.00174 * 25 23 21 27 27 H 1.48504 * 109.46872 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47343 * 299.99718 * 25 23 21 29 29 C 1.48561 * 104.22040 * 320.51265 * 16 15 14 30 30 H 1.09001 * 109.47150 * 90.00115 * 1 2 3 31 31 H 1.09005 * 109.47139 * 209.99684 * 1 2 3 32 32 H 1.08999 * 109.47228 * 329.99882 * 1 2 3 33 33 H 1.08997 * 109.36158 * 311.08794 * 7 5 3 34 34 H 1.09002 * 109.36095 * 70.81358 * 7 5 3 35 35 H 1.08005 * 117.96869 * 197.35042 * 8 7 5 36 36 H 1.08002 * 117.96781 * 179.29694 * 9 8 7 37 37 H 1.08997 * 109.35957 * 137.60317 * 10 9 8 38 38 H 1.08999 * 109.36090 * 257.18937 * 10 9 8 39 39 H 1.08996 * 109.63819 * 70.24884 * 11 10 9 40 40 H 1.08994 * 109.63980 * 190.66911 * 11 10 9 41 41 H 1.09003 * 110.32824 * 237.79673 * 14 12 2 42 42 H 1.09004 * 110.32339 * 0.02562 * 14 12 2 43 43 H 1.08998 * 110.40873 * 142.63855 * 15 14 12 44 44 H 1.09006 * 110.41177 * 265.07374 * 15 14 12 45 45 H 1.08999 * 109.47346 * 50.12382 * 17 16 15 46 46 H 1.08994 * 109.47337 * 170.12827 * 17 16 15 47 47 H 0.97002 * 120.00319 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99759 * 179.97438 * 24 23 21 49 49 H 1.08996 * 110.41400 * 280.70284 * 29 16 15 50 50 H 1.09007 * 110.40780 * 158.26373 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 1 0.7499 2.5315 0.8842 7 6 0.5237 2.5693 -1.2602 8 6 -0.0255 3.9585 -1.4037 9 6 0.4462 4.9924 -0.7839 10 6 1.5945 4.9427 0.1810 11 6 2.3787 3.6411 0.0005 12 6 2.1975 -1.2688 -0.0006 13 1 3.2718 -1.0849 -0.0125 14 6 1.8117 -2.1108 1.2330 15 6 1.1980 -3.4057 0.6588 16 7 1.7752 -3.5207 -0.7052 17 6 0.9482 -4.3874 -1.5554 18 6 1.0664 -5.8139 -1.0841 19 8 1.7707 -6.0823 -0.1338 20 7 0.3896 -6.7916 -1.7185 21 6 0.4975 -8.0894 -1.2901 22 1 1.1247 -8.3284 -0.4439 23 6 -0.1999 -9.0974 -1.9445 24 7 -0.9625 -8.8068 -2.9745 25 14 -0.0533 -10.8656 -1.3603 26 1 -0.5189 -10.9624 0.0465 27 1 -0.8898 -11.7417 -2.2194 28 1 1.3648 -11.2985 -1.4433 29 6 1.7844 -2.1258 -1.2163 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.1305 2.3252 -2.1322 34 1 -0.3041 1.8640 -1.1873 35 1 -0.8641 4.1055 -2.0682 36 1 -0.0184 5.9496 -0.9693 37 1 2.2552 5.7906 0.0004 38 1 1.2124 4.9959 1.2005 39 1 2.9158 3.6655 -0.9476 40 1 3.0875 3.5238 0.8202 41 1 2.6969 -2.3417 1.8257 42 1 1.0770 -1.5803 1.8388 43 1 1.4844 -4.2641 1.2665 44 1 0.1124 -3.3213 0.6065 45 1 -0.0927 -4.0698 -1.4945 46 1 1.2899 -4.3165 -2.5879 47 1 -0.1734 -6.5771 -2.4788 48 1 -1.4491 -9.5106 -3.4316 49 1 0.7908 -1.8411 -1.5622 50 1 2.5126 -2.0206 -2.0207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698555134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:02 Heat of formation + Delta-G solvation = -68.033856 kcal Electronic energy + Delta-G solvation = -29194.610662 eV Core-core repulsion = 25221.039853 eV Total energy + Delta-G solvation = -3973.570809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72789 -40.51524 -39.36579 -38.36735 -36.40847 -35.82511 -33.37788 -32.95617 -31.90587 -31.49057 -29.67562 -28.39944 -27.67083 -26.08401 -24.72992 -23.85965 -22.51475 -21.70843 -21.01082 -20.08957 -19.80257 -18.90722 -18.31823 -17.82751 -17.55504 -16.83866 -16.67210 -16.36003 -16.17090 -15.93926 -15.74430 -15.48236 -14.90867 -14.77353 -14.61192 -14.37283 -14.15438 -14.04941 -13.80360 -13.63803 -13.44467 -13.33856 -13.23965 -13.15055 -12.94352 -12.87906 -12.66438 -12.43410 -12.35134 -12.26930 -12.11702 -11.97521 -11.79669 -11.61335 -11.47280 -11.29021 -10.65936 -10.33605 -10.00172 -9.84010 -9.69984 -9.38993 -8.45803 -5.94213 1.39839 1.41741 1.44530 1.52371 1.56458 1.86808 2.06385 2.29406 2.86513 3.20785 3.36606 3.38234 3.57021 3.71934 3.75749 3.87289 4.04223 4.11111 4.19793 4.23742 4.30875 4.32706 4.36207 4.41333 4.45116 4.48609 4.52082 4.61595 4.62253 4.66160 4.71359 4.75359 4.87140 4.94430 4.99333 5.04369 5.07138 5.10639 5.13771 5.28134 5.33789 5.41140 5.43239 5.80163 5.82855 5.91804 6.07345 6.08997 6.35693 6.61738 7.12462 7.13997 7.57389 8.13686 8.71336 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.001967 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.233271 B =14231.450430 C =14730.581369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.602 5.602 3 C 0.515 3.485 4 O -0.584 6.584 5 C -0.097 4.097 6 H 0.119 0.881 7 C -0.087 4.087 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.090 4.090 11 C -0.100 4.100 12 C 0.142 3.858 13 H 0.087 0.913 14 C -0.121 4.121 15 C 0.042 3.958 16 N -0.510 5.510 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.031 3.969 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.071 0.929 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 28.429 3.112 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.334 5.334 3 C 0.305 3.695 4 O -0.464 6.464 5 C -0.118 4.118 6 H 0.137 0.863 7 C -0.124 4.124 8 C -0.178 4.178 9 C -0.178 4.178 10 C -0.126 4.126 11 C -0.138 4.138 12 C 0.038 3.962 13 H 0.105 0.895 14 C -0.159 4.159 15 C -0.086 4.086 16 N -0.235 5.235 17 C -0.082 4.082 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.097 4.097 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.844 27.881 3.610 28.257 hybrid contribution -0.759 -0.930 -0.360 1.254 sum -3.603 26.951 3.249 27.384 Atomic orbital electron populations 1.22259 0.77482 1.04787 1.03509 1.47970 1.08157 1.04644 1.72617 1.21271 0.87570 0.86253 0.74413 1.90683 1.16161 1.87918 1.51634 1.21386 0.97996 0.90430 1.02018 0.86331 1.20639 0.99222 0.97001 0.95521 1.22093 1.00812 0.93764 1.01098 1.22249 0.97967 0.99053 0.98555 1.20495 0.95749 0.96936 0.99458 1.21395 0.96840 0.93497 1.02104 1.21555 0.97404 0.82842 0.94438 0.89523 1.22607 1.01769 0.94391 0.97183 1.23045 0.97004 0.98081 0.90487 1.65028 1.48403 1.07614 1.02419 1.21900 0.97510 0.90020 0.98748 1.20733 0.83034 0.87997 0.85365 1.90486 1.43838 1.84377 1.31521 1.41909 1.42526 1.06406 1.30314 1.19602 1.27772 0.83999 1.14808 0.90432 1.26013 0.95509 1.03874 0.95876 1.69662 1.29692 1.35743 1.20982 0.85008 0.78356 0.76838 0.78250 1.19675 1.19449 1.19933 1.23411 1.01930 0.87018 0.97343 0.90541 0.90482 0.88195 0.91612 0.87847 0.86244 0.86583 0.90080 0.89646 0.92890 0.92080 0.91240 0.88627 0.92007 0.93023 0.90543 0.87449 0.76995 0.91319 0.91069 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 7.44 127.77 0.95 1.59 16 2 N -0.60 -11.00 2.79 -817.59 -2.28 -13.28 16 3 C 0.52 10.94 7.05 87.66 0.62 11.56 16 4 O -0.58 -17.88 15.26 -3.05 -0.05 -17.92 16 5 C -0.10 -1.36 1.75 -11.40 -0.02 -1.38 16 6 H 0.12 1.19 7.37 -2.38 -0.02 1.17 16 7 C -0.09 -0.94 4.96 29.66 0.15 -0.80 16 8 C -0.16 -1.55 9.80 27.04 0.27 -1.28 16 9 C -0.16 -1.56 9.80 27.04 0.27 -1.30 16 10 C -0.09 -0.93 6.12 29.66 0.18 -0.75 16 11 C -0.10 -1.57 4.69 30.74 0.14 -1.42 16 12 C 0.14 3.40 3.46 45.88 0.16 3.55 16 13 H 0.09 2.55 6.96 -2.38 -0.02 2.53 16 14 C -0.12 -2.91 6.17 31.49 0.19 -2.72 16 15 C 0.04 1.27 5.80 86.45 0.50 1.77 16 16 N -0.51 -16.61 5.06 -886.06 -4.49 -21.10 16 17 C 0.05 1.70 5.30 85.56 0.45 2.15 16 18 C 0.44 21.02 7.58 87.66 0.66 21.69 16 19 O -0.62 -34.32 14.42 -3.06 -0.04 -34.36 16 20 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 21 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.39 13.05 21.66 0.28 -49.10 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 C 0.03 0.77 6.09 86.45 0.53 1.29 16 30 H 0.08 0.61 6.96 -2.39 -0.02 0.60 16 31 H 0.08 0.84 6.83 -2.38 -0.02 0.82 16 32 H 0.10 0.59 5.92 -2.39 -0.01 0.57 16 33 H 0.07 0.91 8.10 -2.39 -0.02 0.90 16 34 H 0.10 0.72 5.03 -2.39 -0.01 0.71 16 35 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.12 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 40 H 0.06 1.11 7.91 -2.39 -0.02 1.10 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.83 6.97 -2.38 -0.02 1.81 16 43 H 0.06 2.39 6.91 -2.39 -0.02 2.37 16 44 H 0.05 1.40 7.82 -2.38 -0.02 1.38 16 45 H 0.08 2.21 7.88 -2.39 -0.02 2.19 16 46 H 0.11 3.29 8.13 -2.39 -0.02 3.27 16 47 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.07 1.40 6.73 -2.39 -0.02 1.39 16 50 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -73.71 387.65 0.38 -73.34 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.22 Total: 32.72 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.33 Total: 15.67 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -8.11 Total: -114.46 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.09 Total: -52.29 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.71 0.38 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.303 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds