Wall clock time and date at job start Tue Mar 31 2020 18:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99916 * 2 1 4 4 O 1.21285 * 119.99756 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00143 * 0.02562 * 3 2 1 6 6 H 1.08996 * 109.64313 * 299.57794 * 5 3 2 7 7 C 1.53022 * 109.64080 * 59.99505 * 5 3 2 8 8 C 1.50070 * 110.14697 * 169.12134 * 7 5 3 9 9 C 1.29442 * 124.07384 * 342.86960 * 8 7 5 10 10 C 1.50069 * 124.07873 * 0.44593 * 9 8 7 11 11 C 1.53018 * 110.15069 * 342.90689 * 10 9 8 12 12 C 1.46502 * 119.99924 * 180.02562 * 2 1 3 13 13 H 1.09002 * 110.87538 * 182.39296 * 12 2 1 14 14 C 1.55138 * 110.99232 * 58.54236 * 12 2 1 15 15 C 1.54320 * 103.01699 * 206.25531 * 14 12 2 16 16 N 1.47446 * 107.23299 * 22.28557 * 15 14 12 17 17 C 1.46903 * 110.99901 * 123.26024 * 16 15 14 18 18 C 1.50696 * 109.47177 * 69.86829 * 17 16 15 19 19 O 1.21292 * 120.00262 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99627 * 179.97438 * 18 17 16 21 21 C 1.37090 * 119.99714 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00232 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99992 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00236 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00316 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00267 * 25 23 21 28 28 H 1.48504 * 109.46913 * 150.00066 * 25 23 21 29 29 C 1.47835 * 108.56740 * 0.98857 * 16 15 14 30 30 H 1.08996 * 109.47273 * 269.99345 * 1 2 3 31 31 H 1.09002 * 109.47552 * 29.99417 * 1 2 3 32 32 H 1.09000 * 109.47621 * 149.99401 * 1 2 3 33 33 H 1.09001 * 109.36268 * 289.32617 * 7 5 3 34 34 H 1.09005 * 109.36117 * 48.91644 * 7 5 3 35 35 H 1.07999 * 117.96049 * 162.89610 * 8 7 5 36 36 H 1.08000 * 117.96148 * 180.47155 * 9 8 7 37 37 H 1.08995 * 109.35596 * 103.09425 * 10 9 8 38 38 H 1.09000 * 109.35950 * 222.68507 * 10 9 8 39 39 H 1.08999 * 109.62646 * 289.72427 * 11 10 9 40 40 H 1.09003 * 109.64496 * 169.09988 * 11 10 9 41 41 H 1.09001 * 110.70080 * 87.87666 * 14 12 2 42 42 H 1.08997 * 110.85900 * 324.70821 * 14 12 2 43 43 H 1.09003 * 109.88728 * 262.87746 * 15 14 12 44 44 H 1.08996 * 110.02268 * 141.76672 * 15 14 12 45 45 H 1.09005 * 109.46883 * 309.86998 * 17 16 15 46 46 H 1.09002 * 109.46817 * 189.87448 * 17 16 15 47 47 H 0.96999 * 120.00048 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99781 * 179.97438 * 24 23 21 49 49 H 1.08997 * 110.37759 * 94.73242 * 29 16 15 50 50 H 1.09002 * 110.37700 * 217.07560 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.7630 2.5365 -0.8919 7 6 0.5045 2.5571 1.2490 8 6 -0.0438 3.9457 1.4013 9 6 0.4341 4.9847 0.7951 10 6 1.5973 4.9445 -0.1523 11 6 2.3785 3.6410 0.0272 12 6 2.1974 -1.2688 -0.0006 13 1 3.2729 -1.0964 0.0420 14 6 1.8207 -2.1275 -1.2365 15 6 2.0927 -3.5681 -0.7548 16 7 2.0452 -3.5522 0.7188 17 6 1.0503 -4.5079 1.2238 18 6 1.5341 -5.9137 0.9778 19 8 2.6028 -6.1012 0.4357 20 7 0.7796 -6.9627 1.3613 21 6 1.2199 -8.2416 1.1380 22 1 2.1715 -8.4086 0.6552 23 6 0.4419 -9.3232 1.5328 24 7 0.8637 -10.5491 1.3183 25 14 -1.2037 -9.0343 2.3684 26 1 -1.0058 -8.9580 3.8381 27 1 -1.7894 -7.7598 1.8809 28 1 -2.1239 -10.1556 2.0502 29 6 1.7338 -2.1777 1.1650 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 -0.3207 1.8509 1.1577 34 1 1.0980 2.3046 2.1278 35 1 -0.8895 4.0870 2.0580 36 1 -0.0330 5.9402 0.9830 37 1 1.2311 5.0077 -1.1769 38 1 2.2551 5.7905 0.0470 39 1 2.9010 3.6561 0.9837 40 1 3.0972 3.5297 -0.7847 41 1 2.4561 -1.8789 -2.0865 42 1 0.7691 -1.9988 -1.4925 43 1 3.0780 -3.8916 -1.0906 44 1 1.3291 -4.2419 -1.1432 45 1 0.1033 -4.3537 0.7065 46 1 0.9091 -4.3540 2.2936 47 1 -0.0749 -6.8127 1.7951 48 1 0.3207 -11.3041 1.5943 49 1 0.6622 -2.0659 1.3302 50 1 2.2856 -1.9396 2.0744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698555135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:06 Heat of formation + Delta-G solvation = -38.086475 kcal Electronic energy + Delta-G solvation = -29193.408966 eV Core-core repulsion = 25221.136773 eV Total energy + Delta-G solvation = -3972.272193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91677 -39.33693 -38.16574 -37.48193 -35.50561 -33.91832 -32.20857 -31.65697 -31.30800 -30.74530 -28.69708 -27.44967 -26.69789 -24.40199 -23.95829 -23.26405 -21.08241 -20.99153 -19.50762 -19.19769 -18.41675 -18.21175 -17.57868 -16.89429 -16.13791 -15.99247 -15.59352 -15.37800 -14.93379 -14.79779 -14.33833 -14.19505 -13.92228 -13.70597 -13.56906 -13.55858 -13.26727 -13.18210 -12.98972 -12.74291 -12.63893 -12.45264 -12.35740 -12.26233 -11.85179 -11.67180 -11.49203 -11.39563 -11.28690 -11.14525 -11.05241 -10.77218 -10.64623 -10.59411 -9.96927 -9.89890 -9.55347 -9.42998 -8.92475 -8.57310 -8.16741 -8.00319 -6.29960 -3.81200 1.84872 2.34001 2.60614 3.01328 3.06462 3.14490 3.75266 3.98589 4.04495 4.10759 4.21156 4.36994 4.48390 4.52622 4.65793 4.73075 4.77488 4.85167 4.87527 4.96684 4.97887 5.07537 5.10330 5.14967 5.18989 5.21330 5.27610 5.35017 5.43426 5.48567 5.51614 5.54802 5.65502 5.68609 5.79698 5.80120 5.89488 5.90209 5.94988 6.04215 6.19811 6.24380 6.39357 6.49561 7.07640 7.11236 7.13803 7.59648 7.90094 8.15677 8.61731 8.96818 9.43712 9.85298 10.83282 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.002075 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.569339 B =13489.553592 C =14197.057211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.605 5.605 3 C 0.520 3.480 4 O -0.534 6.534 5 C -0.105 4.105 6 H 0.098 0.902 7 C -0.091 4.091 8 C -0.155 4.155 9 C -0.155 4.155 10 C -0.093 4.093 11 C -0.100 4.100 12 C 0.131 3.869 13 H 0.118 0.882 14 C -0.154 4.154 15 C 0.058 3.942 16 N -0.502 5.502 17 C 0.039 3.961 18 C 0.453 3.547 19 O -0.556 6.556 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.277 1.277 29 C 0.036 3.964 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.048 0.952 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 30.998 -1.612 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C 0.308 3.692 4 O -0.410 6.410 5 C -0.126 4.126 6 H 0.116 0.884 7 C -0.128 4.128 8 C -0.173 4.173 9 C -0.173 4.173 10 C -0.130 4.130 11 C -0.138 4.138 12 C 0.027 3.973 13 H 0.136 0.864 14 C -0.194 4.194 15 C -0.070 4.070 16 N -0.227 5.227 17 C -0.092 4.092 18 C 0.238 3.762 19 O -0.437 6.437 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.202 1.202 29 C -0.093 4.093 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.765 30.463 -1.764 31.053 hybrid contribution -2.501 0.152 0.476 2.550 sum -8.266 30.615 -1.288 31.737 Atomic orbital electron populations 1.21988 0.79845 1.03396 1.02067 1.47752 1.06817 1.05734 1.73518 1.20672 0.87969 0.85105 0.75487 1.90712 1.13927 1.87212 1.49188 1.21375 0.98060 0.92683 1.00482 0.88355 1.20667 0.99103 0.95977 0.97071 1.21987 1.00380 0.94180 1.00744 1.22106 0.98087 0.98375 0.98731 1.20503 0.95606 0.98097 0.98789 1.21432 0.96739 0.91917 1.03683 1.22257 0.98585 0.81790 0.94637 0.86434 1.23212 1.01784 0.96091 0.98269 1.22707 1.03440 0.93966 0.86892 1.63197 1.46627 1.03261 1.09586 1.22114 0.93081 0.92935 1.01111 1.19634 0.86649 0.85196 0.84725 1.90570 1.22541 1.85268 1.45312 1.42206 1.19420 1.06497 1.55224 1.19422 1.06939 0.79359 1.37452 0.86289 1.25038 0.98325 0.94974 0.97915 1.69623 1.38266 0.97762 1.46592 0.86672 0.83950 0.78296 0.80436 1.19627 1.19615 1.20237 1.23335 0.99355 0.88235 0.98391 0.92002 0.90584 0.90728 0.89637 0.90284 0.87563 0.87862 0.90760 0.90608 0.91028 0.90573 0.90348 0.91261 0.89435 0.92276 0.93264 0.89293 0.79813 0.91658 0.93363 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 7.46 59.84 0.45 0.87 16 2 N -0.61 -5.70 2.91 -171.49 -0.50 -6.19 16 3 C 0.52 5.52 7.06 -10.99 -0.08 5.44 16 4 O -0.53 -7.82 15.27 5.55 0.08 -7.74 16 5 C -0.10 -0.78 1.76 -91.56 -0.16 -0.94 16 6 H 0.10 0.61 7.41 -51.93 -0.39 0.22 16 7 C -0.09 -0.56 4.93 -28.18 -0.14 -0.70 16 8 C -0.15 -0.90 9.80 -35.90 -0.35 -1.25 16 9 C -0.15 -0.89 9.80 -35.90 -0.35 -1.25 16 10 C -0.09 -0.54 6.12 -28.18 -0.17 -0.71 16 11 C -0.10 -0.78 4.70 -26.52 -0.12 -0.90 16 12 C 0.13 1.53 3.45 -65.79 -0.23 1.30 16 13 H 0.12 1.65 7.01 -51.93 -0.36 1.29 16 14 C -0.15 -1.76 6.50 -24.91 -0.16 -1.92 16 15 C 0.06 0.88 5.65 -2.83 -0.02 0.86 16 16 N -0.50 -8.00 4.85 -232.69 -1.13 -9.13 16 17 C 0.04 0.65 5.03 -4.98 -0.03 0.63 16 18 C 0.45 10.26 7.43 -10.98 -0.08 10.17 16 19 O -0.56 -14.93 15.12 5.55 0.08 -14.85 16 20 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 21 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 25 Si 0.88 19.27 27.74 -169.99 -4.71 14.56 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 29 C 0.04 0.44 6.25 -2.30 -0.01 0.42 16 30 H 0.06 0.31 7.15 -51.93 -0.37 -0.06 16 31 H 0.08 0.33 5.90 -51.93 -0.31 0.02 16 32 H 0.07 0.45 6.32 -51.93 -0.33 0.13 16 33 H 0.09 0.40 4.92 -51.93 -0.26 0.15 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.10 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.68 6.32 -51.93 -0.33 0.36 16 43 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.06 0.95 7.31 -51.93 -0.38 0.57 16 45 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 46 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 47 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.05 0.50 6.72 -51.93 -0.35 0.15 16 50 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -34.52 384.76 -9.26 -43.79 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.90 Total: 8.62 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.71 Total: 4.31 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.91 Total: -54.49 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.59 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.52 -9.26 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.699 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds