Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99916 * 2 1 4 4 O 1.21285 * 119.99756 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00143 * 0.02562 * 3 2 1 6 6 H 1.08996 * 109.64313 * 299.57794 * 5 3 2 7 7 C 1.53022 * 109.64080 * 59.99505 * 5 3 2 8 8 C 1.50070 * 110.14697 * 169.12134 * 7 5 3 9 9 C 1.29442 * 124.07384 * 342.86960 * 8 7 5 10 10 C 1.50069 * 124.07873 * 0.44593 * 9 8 7 11 11 C 1.53018 * 110.15069 * 342.90689 * 10 9 8 12 12 C 1.46502 * 119.99924 * 180.02562 * 2 1 3 13 13 H 1.09002 * 110.87538 * 182.39296 * 12 2 1 14 14 C 1.55138 * 110.99232 * 58.54236 * 12 2 1 15 15 C 1.54320 * 103.01699 * 206.25531 * 14 12 2 16 16 N 1.47446 * 107.23299 * 22.28557 * 15 14 12 17 17 C 1.46903 * 110.99901 * 123.26024 * 16 15 14 18 18 C 1.50696 * 109.47177 * 69.86829 * 17 16 15 19 19 O 1.21292 * 120.00262 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99627 * 179.97438 * 18 17 16 21 21 C 1.37090 * 119.99714 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00232 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99992 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00236 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00316 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00267 * 25 23 21 28 28 H 1.48504 * 109.46913 * 150.00066 * 25 23 21 29 29 C 1.47835 * 108.56740 * 0.98857 * 16 15 14 30 30 H 1.08996 * 109.47273 * 269.99345 * 1 2 3 31 31 H 1.09002 * 109.47552 * 29.99417 * 1 2 3 32 32 H 1.09000 * 109.47621 * 149.99401 * 1 2 3 33 33 H 1.09001 * 109.36268 * 289.32617 * 7 5 3 34 34 H 1.09005 * 109.36117 * 48.91644 * 7 5 3 35 35 H 1.07999 * 117.96049 * 162.89610 * 8 7 5 36 36 H 1.08000 * 117.96148 * 180.47155 * 9 8 7 37 37 H 1.08995 * 109.35596 * 103.09425 * 10 9 8 38 38 H 1.09000 * 109.35950 * 222.68507 * 10 9 8 39 39 H 1.08999 * 109.62646 * 289.72427 * 11 10 9 40 40 H 1.09003 * 109.64496 * 169.09988 * 11 10 9 41 41 H 1.09001 * 110.70080 * 87.87666 * 14 12 2 42 42 H 1.08997 * 110.85900 * 324.70821 * 14 12 2 43 43 H 1.09003 * 109.88728 * 262.87746 * 15 14 12 44 44 H 1.08996 * 110.02268 * 141.76672 * 15 14 12 45 45 H 1.09005 * 109.46883 * 309.86998 * 17 16 15 46 46 H 1.09002 * 109.46817 * 189.87448 * 17 16 15 47 47 H 0.96999 * 120.00048 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99781 * 179.97438 * 24 23 21 49 49 H 1.08997 * 110.37759 * 94.73242 * 29 16 15 50 50 H 1.09002 * 110.37700 * 217.07560 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.7630 2.5365 -0.8919 7 6 0.5045 2.5571 1.2490 8 6 -0.0438 3.9457 1.4013 9 6 0.4341 4.9847 0.7951 10 6 1.5973 4.9445 -0.1523 11 6 2.3785 3.6410 0.0272 12 6 2.1974 -1.2688 -0.0006 13 1 3.2729 -1.0964 0.0420 14 6 1.8207 -2.1275 -1.2365 15 6 2.0927 -3.5681 -0.7548 16 7 2.0452 -3.5522 0.7188 17 6 1.0503 -4.5079 1.2238 18 6 1.5341 -5.9137 0.9778 19 8 2.6028 -6.1012 0.4357 20 7 0.7796 -6.9627 1.3613 21 6 1.2199 -8.2416 1.1380 22 1 2.1715 -8.4086 0.6552 23 6 0.4419 -9.3232 1.5328 24 7 0.8637 -10.5491 1.3183 25 14 -1.2037 -9.0343 2.3684 26 1 -1.0058 -8.9580 3.8381 27 1 -1.7894 -7.7598 1.8809 28 1 -2.1239 -10.1556 2.0502 29 6 1.7338 -2.1777 1.1650 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 -0.3207 1.8509 1.1577 34 1 1.0980 2.3046 2.1278 35 1 -0.8895 4.0870 2.0580 36 1 -0.0330 5.9402 0.9830 37 1 1.2311 5.0077 -1.1769 38 1 2.2551 5.7905 0.0470 39 1 2.9010 3.6561 0.9837 40 1 3.0972 3.5297 -0.7847 41 1 2.4561 -1.8789 -2.0865 42 1 0.7691 -1.9988 -1.4925 43 1 3.0780 -3.8916 -1.0906 44 1 1.3291 -4.2419 -1.1432 45 1 0.1033 -4.3537 0.7065 46 1 0.9091 -4.3540 2.2936 47 1 -0.0749 -6.8127 1.7951 48 1 0.3207 -11.3041 1.5943 49 1 0.6622 -2.0659 1.3302 50 1 2.2856 -1.9396 2.0744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698555135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = -63.622881 kcal Electronic energy + Delta-G solvation = -29194.516308 eV Core-core repulsion = 25221.136773 eV Total energy + Delta-G solvation = -3973.379535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71195 -40.63580 -39.42468 -38.39392 -36.46982 -35.88050 -33.76320 -33.01241 -31.91656 -31.51199 -29.71313 -28.42924 -27.80524 -25.91929 -24.77583 -23.87032 -22.29862 -21.87073 -21.20083 -20.32933 -19.91814 -18.90515 -18.34486 -17.69879 -17.66408 -16.86005 -16.83276 -16.60452 -16.15349 -15.81169 -15.49675 -15.26969 -14.90909 -14.70478 -14.66342 -14.47137 -14.26904 -14.18961 -14.02778 -13.82903 -13.78407 -13.41206 -13.25021 -13.20757 -12.97804 -12.85328 -12.57276 -12.52712 -12.40774 -12.26888 -11.97689 -11.96549 -11.73866 -11.58428 -11.49122 -11.29225 -10.68852 -10.41576 -10.22991 -9.83385 -9.69114 -9.23386 -8.39824 -6.00824 1.30421 1.37255 1.45054 1.45757 1.55684 1.83247 1.97990 2.24515 2.70288 3.15426 3.22929 3.37697 3.58433 3.67282 3.72323 3.86598 3.99613 4.10316 4.12328 4.20566 4.25591 4.30788 4.36081 4.38458 4.41428 4.46160 4.49461 4.61788 4.63306 4.64698 4.71081 4.79639 4.89255 4.94242 4.95050 5.02212 5.05607 5.10786 5.17382 5.28143 5.33614 5.46500 5.54373 5.80699 5.89108 5.97575 6.06041 6.09463 6.35099 6.61577 6.90288 7.12165 7.41568 7.99821 8.77989 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.002075 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.569339 B =13489.553592 C =14197.057211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.514 3.486 4 O -0.586 6.586 5 C -0.097 4.097 6 H 0.120 0.880 7 C -0.088 4.088 8 C -0.158 4.158 9 C -0.162 4.162 10 C -0.090 4.090 11 C -0.101 4.101 12 C 0.136 3.864 13 H 0.084 0.916 14 C -0.137 4.137 15 C 0.060 3.940 16 N -0.534 5.534 17 C 0.053 3.947 18 C 0.449 3.551 19 O -0.609 6.609 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.052 0.948 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.258 1.258 27 H -0.228 1.228 28 H -0.276 1.276 29 C 0.045 3.955 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.083 0.917 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 34.019 -0.372 36.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.331 5.331 3 C 0.304 3.696 4 O -0.466 6.466 5 C -0.117 4.117 6 H 0.137 0.863 7 C -0.124 4.124 8 C -0.176 4.176 9 C -0.180 4.180 10 C -0.126 4.126 11 C -0.139 4.139 12 C 0.031 3.969 13 H 0.102 0.898 14 C -0.176 4.176 15 C -0.068 4.068 16 N -0.259 5.259 17 C -0.078 4.078 18 C 0.237 3.763 19 O -0.492 6.492 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.182 1.182 27 H -0.151 1.151 28 H -0.201 1.201 29 C -0.083 4.083 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.138 0.862 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.787 33.522 -0.522 35.219 hybrid contribution -0.764 -0.808 0.029 1.113 sum -11.551 32.714 -0.493 34.697 Atomic orbital electron populations 1.22343 0.77100 1.04995 1.03825 1.47782 1.08333 1.04336 1.72605 1.21313 0.87553 0.86344 0.74415 1.90694 1.16349 1.87935 1.51606 1.21382 0.97868 0.90282 1.02218 0.86269 1.20675 0.99179 0.97039 0.95545 1.22101 1.00811 0.93746 1.00985 1.22240 0.97900 0.99100 0.98729 1.20487 0.95652 0.96865 0.99641 1.21398 0.96908 0.93602 1.02006 1.21930 0.97285 0.82976 0.94717 0.89823 1.23075 1.03422 0.93243 0.97897 1.22543 1.01116 0.96104 0.87035 1.63019 1.47699 1.05298 1.09882 1.22025 0.94079 0.88200 1.03495 1.20957 0.85526 0.87516 0.82303 1.90556 1.25025 1.86580 1.47080 1.42009 1.20481 1.05008 1.55929 1.18977 1.05497 0.82340 1.38809 0.92968 1.26162 1.03622 0.93828 0.98032 1.69817 1.40720 0.99287 1.47893 0.85337 0.76662 0.80094 0.79225 1.18234 1.15082 1.20121 1.23289 1.01296 0.85799 0.97930 0.90085 0.88343 0.89911 0.87412 0.91635 0.86109 0.86626 0.89687 0.90186 0.92923 0.92228 0.90592 0.88383 0.93152 0.93226 0.89445 0.86171 0.77449 0.91205 0.89941 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 7.46 127.77 0.95 1.38 16 2 N -0.60 -9.80 2.91 -814.87 -2.37 -12.17 16 3 C 0.51 10.40 7.06 87.66 0.62 11.02 16 4 O -0.59 -17.78 15.27 -3.04 -0.05 -17.83 16 5 C -0.10 -1.24 1.76 -11.40 -0.02 -1.26 16 6 H 0.12 1.05 7.41 -2.39 -0.02 1.03 16 7 C -0.09 -0.81 4.93 29.66 0.15 -0.66 16 8 C -0.16 -1.32 9.80 27.04 0.27 -1.06 16 9 C -0.16 -1.42 9.80 27.04 0.27 -1.16 16 10 C -0.09 -0.88 6.12 29.66 0.18 -0.70 16 11 C -0.10 -1.53 4.70 30.73 0.14 -1.38 16 12 C 0.14 3.01 3.45 46.38 0.16 3.17 16 13 H 0.08 2.45 7.01 -2.39 -0.02 2.44 16 14 C -0.14 -2.94 6.50 31.77 0.21 -2.73 16 15 C 0.06 1.83 5.65 86.65 0.49 2.32 16 16 N -0.53 -16.34 4.85 -890.10 -4.32 -20.66 16 17 C 0.05 1.59 5.03 85.56 0.43 2.02 16 18 C 0.45 20.33 7.43 87.65 0.65 20.99 16 19 O -0.61 -34.36 15.12 -3.07 -0.05 -34.40 16 20 N -0.59 -27.73 5.09 -306.98 -1.56 -29.30 16 21 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 22 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 24 N -0.94 -56.74 13.96 21.66 0.30 -56.44 16 25 Si 0.97 38.27 27.74 68.60 1.90 40.17 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 28 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 29 C 0.04 0.97 6.25 86.78 0.54 1.52 16 30 H 0.08 0.35 7.15 -2.39 -0.02 0.33 16 31 H 0.10 0.32 5.90 -2.39 -0.01 0.31 16 32 H 0.08 0.53 6.32 -2.39 -0.02 0.52 16 33 H 0.11 0.49 4.92 -2.39 -0.01 0.48 16 34 H 0.07 0.81 8.10 -2.38 -0.02 0.79 16 35 H 0.12 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 40 H 0.06 1.07 7.89 -2.39 -0.02 1.06 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.10 1.56 6.32 -2.39 -0.02 1.55 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.57 7.31 -2.39 -0.02 1.55 16 45 H 0.09 2.02 7.96 -2.38 -0.02 2.00 16 46 H 0.12 2.91 8.07 -2.39 -0.02 2.89 16 47 H 0.39 14.85 5.76 -92.71 -0.53 14.31 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.08 1.26 6.72 -2.39 -0.02 1.24 16 50 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -84.80 384.76 0.57 -84.23 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.36 Total: 31.85 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.35 Total: 14.54 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -7.95 Total: -118.56 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.09 Total: -52.23 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -84.80 0.57 -84.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.607 kcal (2) G-P(sol) polarization free energy of solvation -84.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds