Wall clock time and date at job start Tue Mar 31 2020 18:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50703 * 109.47077 * 269.99336 * 3 2 1 5 5 O 1.21279 * 119.99646 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99977 * 180.02562 * 4 3 2 7 7 C 1.46878 * 120.46610 * 359.72936 * 6 4 3 8 8 C 1.52863 * 109.01672 * 235.48388 * 7 6 4 9 9 C 1.52676 * 109.17429 * 307.82189 * 8 7 6 10 10 C 1.53482 * 113.62072 * 188.99511 * 9 8 7 11 11 N 1.47667 * 85.98864 * 137.70533 * 10 9 8 12 12 C 1.36932 * 134.45996 * 155.71882 * 11 10 9 13 13 H 1.07996 * 120.00643 * 179.97438 * 12 11 10 14 14 C 1.38817 * 119.99905 * 359.94229 * 12 11 10 15 15 N 1.31619 * 119.99800 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47263 * 120.00352 * 16 14 12 19 19 H 1.48498 * 109.47331 * 240.00571 * 16 14 12 20 20 C 1.47667 * 91.08342 * 335.67727 * 11 10 9 21 21 C 1.52670 * 113.18892 * 57.45908 * 9 8 7 22 22 C 1.46883 * 120.46041 * 180.02562 * 6 4 3 23 23 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 24 24 O 1.21274 * 120.00135 * 180.27973 * 23 2 1 25 25 C 1.50706 * 119.99766 * 0.02562 * 23 2 1 26 26 C 1.52998 * 117.49548 * 248.74267 * 25 23 2 27 27 C 1.52999 * 117.49514 * 180.08498 * 25 23 2 28 28 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 29 29 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 30 30 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 31 31 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 32 32 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 33 33 H 1.08999 * 109.58997 * 355.30479 * 7 6 4 34 34 H 1.09004 * 109.59018 * 115.75041 * 7 6 4 35 35 H 1.08989 * 109.61228 * 187.84253 * 8 7 6 36 36 H 1.09004 * 109.38289 * 67.65757 * 8 7 6 37 37 H 1.09009 * 113.79135 * 251.97091 * 10 9 8 38 38 H 1.09001 * 113.79251 * 23.42927 * 10 9 8 39 39 H 0.96998 * 120.00193 * 180.02562 * 15 14 12 40 40 H 1.08996 * 113.79315 * 270.04966 * 20 11 10 41 41 H 1.09004 * 113.78889 * 138.58062 * 20 11 10 42 42 H 1.08998 * 109.53136 * 182.51755 * 21 9 8 43 43 H 1.09011 * 109.52846 * 62.29526 * 21 9 8 44 44 H 1.09002 * 109.58830 * 244.25293 * 22 6 4 45 45 H 1.09000 * 109.59314 * 4.68948 * 22 6 4 46 46 H 1.08996 * 115.55231 * 34.41503 * 25 23 2 47 47 H 1.08992 * 117.50074 * 0.02562 * 26 25 23 48 48 H 1.09001 * 117.49625 * 145.02711 * 26 25 23 49 49 H 1.09006 * 117.49693 * 214.98070 * 27 25 23 50 50 H 1.08998 * 117.50050 * 359.97284 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0544 1.0213 -2.3426 6 7 3.1118 2.8509 -1.6671 7 6 3.5887 3.6881 -0.5585 8 6 3.0299 5.1011 -0.7253 9 6 3.3469 5.6030 -2.1319 10 6 3.0266 7.0894 -2.3413 11 7 4.3114 7.1575 -3.0660 12 6 4.8249 7.9804 -4.0326 13 1 5.8234 7.8141 -4.4088 14 6 4.0616 9.0281 -4.5294 15 7 2.8445 9.2307 -4.0710 16 14 4.7617 10.1502 -5.8484 17 1 6.1389 9.7127 -6.1907 18 1 3.9061 10.0836 -7.0603 19 1 4.7965 11.5463 -5.3433 20 6 4.8210 5.9831 -2.3300 21 6 2.7967 4.6979 -3.2314 22 6 3.3618 3.2848 -3.0480 23 6 2.1389 -1.1672 0.0005 24 8 3.3516 -1.1673 0.0056 25 6 1.3853 -2.4723 0.0005 26 6 1.4577 -3.3298 1.2656 27 6 2.2074 -3.7627 0.0031 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5139 33 1 3.2460 3.2708 0.3883 34 1 4.6780 3.7254 -0.5711 35 1 3.4862 5.7641 0.0096 36 1 1.9497 5.0825 -0.5799 37 1 2.1558 7.2669 -2.9725 38 1 3.0107 7.6700 -1.4189 39 1 2.3110 9.9625 -4.4184 40 1 5.3384 6.2349 -1.4043 41 1 5.3762 5.2812 -2.9522 42 1 3.0941 5.0859 -4.2056 43 1 1.7089 4.6664 -3.1670 44 1 4.4347 3.2929 -3.2399 45 1 2.8697 2.6018 -3.7404 46 1 0.4479 -2.4739 -0.5556 47 1 2.0499 -2.9498 2.0979 48 1 0.5680 -3.8959 1.5414 49 1 1.8105 -4.6134 -0.5510 50 1 3.2932 -3.6677 0.0044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698805937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:36 Heat of formation + Delta-G solvation = 24.720381 kcal Electronic energy + Delta-G solvation = -29724.367492 eV Core-core repulsion = 25754.818809 eV Total energy + Delta-G solvation = -3969.548683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75603 -39.95054 -38.62671 -36.56540 -35.81670 -35.47441 -32.52718 -31.36342 -30.59373 -29.04386 -26.95715 -26.70960 -25.05535 -24.28282 -23.52795 -22.83279 -22.69794 -21.26051 -19.82704 -19.02137 -17.92750 -17.76124 -16.89510 -16.71176 -16.56977 -15.63535 -15.48555 -15.19506 -14.89296 -14.70933 -14.60968 -14.16994 -13.77400 -13.75873 -13.39401 -13.26369 -13.20432 -12.96269 -12.57246 -12.41219 -12.35590 -12.22536 -11.96110 -11.89112 -11.69375 -11.11652 -11.03985 -10.94361 -10.87669 -10.84385 -10.82288 -10.33281 -10.20011 -10.06246 -10.01731 -9.71150 -9.57179 -9.35499 -8.87276 -8.78391 -8.42465 -6.85112 -5.75736 -3.07215 2.19384 2.56434 2.64521 3.16295 3.38864 3.44569 3.46796 3.53304 4.15463 4.40597 4.46163 4.46926 4.53525 4.66472 4.79727 4.89429 4.91567 5.02828 5.09900 5.18854 5.21865 5.22361 5.30915 5.35661 5.36263 5.46948 5.49325 5.53390 5.60436 5.69912 5.78927 5.86370 5.90854 5.97388 6.04342 6.18584 6.27975 6.30735 6.44498 6.62131 6.65156 6.80560 6.87803 7.03701 7.24197 7.38312 7.47655 7.59533 7.91826 8.00143 8.21407 9.06533 9.72482 10.62634 11.41356 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.002169 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.480668 B =12905.978610 C =12973.840065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.097 3.903 4 C 0.498 3.502 5 O -0.540 6.540 6 N -0.603 5.603 7 C 0.108 3.892 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.173 3.827 11 N -0.610 5.610 12 C -0.219 4.219 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.921 5.921 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.126 3.874 21 C -0.095 4.095 22 C 0.114 3.886 23 C 0.550 3.450 24 O -0.538 6.538 25 C -0.193 4.193 26 C -0.152 4.152 27 C -0.148 4.148 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.252 0.748 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 -21.512 13.665 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.329 5.329 3 C -0.030 4.030 4 C 0.284 3.716 5 O -0.417 6.417 6 N -0.337 5.337 7 C -0.014 4.014 8 C -0.158 4.158 9 C -0.110 4.110 10 C 0.048 3.952 11 N -0.335 5.335 12 C -0.347 4.347 13 H 0.096 0.904 14 C -0.206 4.206 15 N -0.569 5.569 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.000 4.000 21 C -0.133 4.133 22 C -0.008 4.008 23 C 0.339 3.661 24 O -0.414 6.414 25 C -0.214 4.214 26 C -0.189 4.189 27 C -0.186 4.186 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.215 -21.597 12.933 25.929 hybrid contribution 0.268 1.150 -0.702 1.374 sum -5.947 -20.446 12.231 24.556 Atomic orbital electron populations 1.21839 0.78624 1.03863 1.01676 1.47308 1.07258 1.04772 1.73541 1.21380 1.00051 0.86486 0.95038 1.21035 0.77886 0.80794 0.91850 1.90671 1.51347 1.53581 1.46092 1.48122 1.55899 1.21632 1.08051 1.21712 0.99770 0.91499 0.88460 1.21758 1.01040 0.94760 0.98217 1.22387 0.98073 0.97750 0.92784 1.22230 0.91602 0.87325 0.94032 1.45970 1.13962 1.32548 1.41060 1.19059 0.98577 1.06380 1.10703 0.90361 1.24764 0.96581 0.98921 1.00300 1.69823 1.09226 1.32535 1.45310 0.86081 0.78062 0.80587 0.81254 1.20510 1.21755 1.21834 1.22598 0.93264 0.89675 0.94491 1.21471 0.99634 0.92371 0.99810 1.21681 1.00796 0.96421 0.81911 1.19643 0.87228 0.84320 0.74912 1.90691 1.13920 1.87157 1.49653 1.22209 1.02866 0.90649 1.05655 1.22943 1.03194 1.01443 0.91338 1.22977 1.00158 0.95299 1.00136 0.92183 0.90842 0.90656 0.87342 0.86930 0.90521 0.90920 0.90527 0.91801 0.91023 0.95771 0.93782 0.95106 0.94141 0.89498 0.92218 0.91466 0.89514 0.85598 0.88274 0.87754 0.87859 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.27 59.85 0.61 1.20 16 2 N -0.60 -6.28 2.36 -182.95 -0.43 -6.71 16 3 C 0.10 1.02 4.23 -5.19 -0.02 1.00 16 4 C 0.50 7.07 7.76 -10.99 -0.09 6.99 16 5 O -0.54 -9.63 15.82 5.56 0.09 -9.54 16 6 N -0.60 -8.23 2.95 -172.97 -0.51 -8.74 16 7 C 0.11 1.21 6.19 -3.91 -0.02 1.19 16 8 C -0.12 -1.56 5.24 -26.97 -0.14 -1.70 16 9 C -0.11 -1.89 0.77 -154.42 -0.12 -2.00 16 10 C 0.17 3.93 6.64 -3.16 -0.02 3.90 16 11 N -0.61 -15.24 3.53 -179.77 -0.64 -15.87 16 12 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 13 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 14 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 15 N -0.92 -27.17 11.39 55.49 0.63 -26.54 16 16 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.13 2.46 7.72 -3.15 -0.02 2.44 16 21 C -0.09 -1.61 5.21 -26.75 -0.14 -1.75 16 22 C 0.11 1.74 6.30 -3.68 -0.02 1.72 16 23 C 0.55 6.71 7.46 -10.98 -0.08 6.63 16 24 O -0.54 -8.53 15.83 5.56 0.09 -8.44 16 25 C -0.19 -1.66 5.28 -91.77 -0.48 -2.15 16 26 C -0.15 -0.98 10.24 -26.69 -0.27 -1.25 16 27 C -0.15 -1.17 10.05 -26.69 -0.27 -1.44 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.07 0.46 6.00 -51.93 -0.31 0.14 16 31 H 0.11 0.80 7.64 -51.93 -0.40 0.40 16 32 H 0.11 1.19 7.19 -51.93 -0.37 0.81 16 33 H 0.08 0.63 5.89 -51.93 -0.31 0.32 16 34 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.08 0.96 8.12 -51.94 -0.42 0.54 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.83 7.12 -51.92 -0.37 1.46 16 38 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 41 H 0.04 0.77 7.41 -51.93 -0.38 0.39 16 42 H 0.09 1.71 8.01 -51.93 -0.42 1.30 16 43 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.07 1.02 7.49 -51.93 -0.39 0.63 16 45 H 0.09 1.41 6.98 -51.93 -0.36 1.05 16 46 H 0.13 0.86 6.44 -51.93 -0.33 0.52 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.11 1.04 7.67 -51.93 -0.40 0.64 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -35.95 395.57 -9.41 -45.36 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.22 Total: -0.81 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.35 Total: 8.14 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.95 Total: -57.85 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.98 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.95 -9.41 -45.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698805937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.076 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds