Wall clock time and date at job start Tue Mar 31 2020 18:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50703 * 109.47077 * 269.99336 * 3 2 1 5 5 O 1.21279 * 119.99646 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99977 * 180.02562 * 4 3 2 7 7 C 1.46878 * 120.46610 * 359.72936 * 6 4 3 8 8 C 1.52863 * 109.01672 * 235.48388 * 7 6 4 9 9 C 1.52676 * 109.17429 * 307.82189 * 8 7 6 10 10 C 1.53482 * 113.62072 * 188.99511 * 9 8 7 11 11 N 1.47667 * 85.98864 * 137.70533 * 10 9 8 12 12 C 1.36932 * 134.45996 * 155.71882 * 11 10 9 13 13 H 1.07996 * 120.00643 * 179.97438 * 12 11 10 14 14 C 1.38817 * 119.99905 * 359.94229 * 12 11 10 15 15 N 1.31619 * 119.99800 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47263 * 120.00352 * 16 14 12 19 19 H 1.48498 * 109.47331 * 240.00571 * 16 14 12 20 20 C 1.47667 * 91.08342 * 335.67727 * 11 10 9 21 21 C 1.52670 * 113.18892 * 57.45908 * 9 8 7 22 22 C 1.46883 * 120.46041 * 180.02562 * 6 4 3 23 23 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 24 24 O 1.21274 * 120.00135 * 180.27973 * 23 2 1 25 25 C 1.50706 * 119.99766 * 0.02562 * 23 2 1 26 26 C 1.52998 * 117.49548 * 248.74267 * 25 23 2 27 27 C 1.52999 * 117.49514 * 180.08498 * 25 23 2 28 28 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 29 29 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 30 30 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 31 31 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 32 32 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 33 33 H 1.08999 * 109.58997 * 355.30479 * 7 6 4 34 34 H 1.09004 * 109.59018 * 115.75041 * 7 6 4 35 35 H 1.08989 * 109.61228 * 187.84253 * 8 7 6 36 36 H 1.09004 * 109.38289 * 67.65757 * 8 7 6 37 37 H 1.09009 * 113.79135 * 251.97091 * 10 9 8 38 38 H 1.09001 * 113.79251 * 23.42927 * 10 9 8 39 39 H 0.96998 * 120.00193 * 180.02562 * 15 14 12 40 40 H 1.08996 * 113.79315 * 270.04966 * 20 11 10 41 41 H 1.09004 * 113.78889 * 138.58062 * 20 11 10 42 42 H 1.08998 * 109.53136 * 182.51755 * 21 9 8 43 43 H 1.09011 * 109.52846 * 62.29526 * 21 9 8 44 44 H 1.09002 * 109.58830 * 244.25293 * 22 6 4 45 45 H 1.09000 * 109.59314 * 4.68948 * 22 6 4 46 46 H 1.08996 * 115.55231 * 34.41503 * 25 23 2 47 47 H 1.08992 * 117.50074 * 0.02562 * 26 25 23 48 48 H 1.09001 * 117.49625 * 145.02711 * 26 25 23 49 49 H 1.09006 * 117.49693 * 214.98070 * 27 25 23 50 50 H 1.08998 * 117.50050 * 359.97284 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0544 1.0213 -2.3426 6 7 3.1118 2.8509 -1.6671 7 6 3.5887 3.6881 -0.5585 8 6 3.0299 5.1011 -0.7253 9 6 3.3469 5.6030 -2.1319 10 6 3.0266 7.0894 -2.3413 11 7 4.3114 7.1575 -3.0660 12 6 4.8249 7.9804 -4.0326 13 1 5.8234 7.8141 -4.4088 14 6 4.0616 9.0281 -4.5294 15 7 2.8445 9.2307 -4.0710 16 14 4.7617 10.1502 -5.8484 17 1 6.1389 9.7127 -6.1907 18 1 3.9061 10.0836 -7.0603 19 1 4.7965 11.5463 -5.3433 20 6 4.8210 5.9831 -2.3300 21 6 2.7967 4.6979 -3.2314 22 6 3.3618 3.2848 -3.0480 23 6 2.1389 -1.1672 0.0005 24 8 3.3516 -1.1673 0.0056 25 6 1.3853 -2.4723 0.0005 26 6 1.4577 -3.3298 1.2656 27 6 2.2074 -3.7627 0.0031 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5139 33 1 3.2460 3.2708 0.3883 34 1 4.6780 3.7254 -0.5711 35 1 3.4862 5.7641 0.0096 36 1 1.9497 5.0825 -0.5799 37 1 2.1558 7.2669 -2.9725 38 1 3.0107 7.6700 -1.4189 39 1 2.3110 9.9625 -4.4184 40 1 5.3384 6.2349 -1.4043 41 1 5.3762 5.2812 -2.9522 42 1 3.0941 5.0859 -4.2056 43 1 1.7089 4.6664 -3.1670 44 1 4.4347 3.2929 -3.2399 45 1 2.8697 2.6018 -3.7404 46 1 0.4479 -2.4739 -0.5556 47 1 2.0499 -2.9498 2.0979 48 1 0.5680 -3.8959 1.5414 49 1 1.8105 -4.6134 -0.5510 50 1 3.2932 -3.6677 0.0044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698805937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:35 Heat of formation + Delta-G solvation = 1.758791 kcal Electronic energy + Delta-G solvation = -29725.363181 eV Core-core repulsion = 25754.818809 eV Total energy + Delta-G solvation = -3970.544373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79453 -41.05845 -39.93895 -37.32825 -36.98873 -36.41015 -34.43316 -32.60123 -32.05862 -30.02625 -28.56113 -27.53789 -26.73751 -25.35083 -24.80286 -23.89838 -23.29775 -22.86604 -20.92983 -19.88443 -19.06782 -18.70602 -18.54809 -18.08245 -17.47466 -16.91981 -16.59206 -16.44431 -16.12802 -16.05865 -15.65227 -15.41808 -15.12460 -14.95606 -14.61442 -14.42917 -14.02104 -13.88606 -13.72499 -13.63168 -13.58142 -13.20283 -13.15203 -12.92074 -12.86728 -12.85941 -12.62956 -12.42157 -12.15349 -12.14023 -11.66696 -11.56348 -11.51999 -11.40676 -11.28999 -11.07442 -10.92906 -10.92542 -10.82035 -9.71951 -9.62113 -8.87230 -7.89762 -5.21257 1.35484 1.43271 1.43840 1.53875 1.57367 1.80594 2.18464 2.46986 2.92009 3.30981 3.42623 3.50214 3.51442 3.62158 3.83221 3.94961 3.98058 3.99487 4.09761 4.17341 4.19938 4.28296 4.31013 4.36308 4.43501 4.63337 4.68785 4.72921 4.75284 4.75648 4.78358 4.87028 4.89671 4.94464 4.96943 5.04351 5.07626 5.14099 5.21601 5.23432 5.28700 5.32269 5.36236 5.53610 5.60754 5.76919 5.97727 6.27500 6.41402 6.94742 7.05824 7.15404 7.62866 8.60204 9.27119 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.002169 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.480668 B =12905.978610 C =12973.840065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.598 5.598 3 C 0.098 3.902 4 C 0.493 3.507 5 O -0.583 6.583 6 N -0.603 5.603 7 C 0.109 3.891 8 C -0.111 4.111 9 C -0.082 4.082 10 C 0.169 3.831 11 N -0.641 5.641 12 C -0.228 4.228 13 H 0.079 0.921 14 C -0.070 4.070 15 N -0.953 5.953 16 Si 0.974 3.026 17 H -0.267 1.267 18 H -0.294 1.294 19 H -0.292 1.292 20 C 0.127 3.873 21 C -0.085 4.085 22 C 0.125 3.875 23 C 0.538 3.462 24 O -0.587 6.587 25 C -0.204 4.204 26 C -0.127 4.127 27 C -0.161 4.161 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.019 0.981 39 H 0.247 0.753 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.146 0.854 47 H 0.092 0.908 48 H 0.135 0.865 49 H 0.124 0.876 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -23.059 16.041 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.028 4.028 4 C 0.282 3.718 5 O -0.463 6.463 6 N -0.336 5.336 7 C -0.012 4.012 8 C -0.150 4.150 9 C -0.083 4.083 10 C 0.044 3.956 11 N -0.367 5.367 12 C -0.356 4.356 13 H 0.097 0.903 14 C -0.262 4.262 15 N -0.603 5.603 16 Si 0.803 3.197 17 H -0.191 1.191 18 H -0.221 1.221 19 H -0.220 1.220 20 C 0.003 3.997 21 C -0.124 4.124 22 C 0.002 3.998 23 C 0.328 3.672 24 O -0.468 6.468 25 C -0.225 4.225 26 C -0.164 4.164 27 C -0.198 4.198 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.163 0.837 47 H 0.111 0.889 48 H 0.153 0.847 49 H 0.142 0.858 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.794 -23.155 15.349 28.599 hybrid contribution 0.454 1.611 -1.451 2.215 sum -6.340 -21.544 13.898 26.410 Atomic orbital electron populations 1.22086 0.76506 1.04207 1.03677 1.47520 1.08668 1.04347 1.72328 1.21532 1.01254 0.87627 0.92423 1.21793 0.76769 0.80169 0.93106 1.90651 1.53064 1.54833 1.47786 1.48201 1.55703 1.22011 1.07698 1.21918 1.00215 0.89837 0.89260 1.21724 1.02239 0.96153 0.94884 1.22100 0.95954 0.94472 0.95786 1.22179 0.89574 0.91136 0.92703 1.46359 1.15521 1.33438 1.41413 1.19415 0.98529 1.06466 1.11239 0.90326 1.25563 0.97095 1.00758 1.02818 1.70006 1.10392 1.33026 1.46827 0.85072 0.77818 0.78396 0.78450 1.19143 1.22096 1.21951 1.22791 0.94791 0.87664 0.94484 1.21311 0.99538 0.93447 0.98082 1.21386 1.00416 0.94629 0.83400 1.20325 0.86979 0.85852 0.74049 1.90657 1.16026 1.87978 1.52097 1.22295 1.03268 0.89111 1.07832 1.23044 1.03570 0.99761 0.90049 1.23030 0.98922 0.95816 1.02077 0.89232 0.91099 0.89833 0.83295 0.86631 0.86254 0.90238 0.88972 0.90579 0.94813 0.96288 0.94436 0.93069 0.93735 0.93028 0.92355 0.91360 0.90832 0.83652 0.88941 0.84656 0.85828 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.27 127.77 1.31 2.15 16 2 N -0.60 -11.21 2.36 -851.13 -2.01 -13.22 16 3 C 0.10 1.77 4.23 85.63 0.36 2.13 16 4 C 0.49 13.17 7.76 87.66 0.68 13.85 16 5 O -0.58 -20.61 15.82 -3.03 -0.05 -20.65 16 6 N -0.60 -15.26 2.95 -819.56 -2.42 -17.67 16 7 C 0.11 2.04 6.19 86.26 0.53 2.57 16 8 C -0.11 -2.57 5.24 30.44 0.16 -2.41 16 9 C -0.08 -2.79 0.77 -52.03 -0.04 -2.83 16 10 C 0.17 7.83 6.64 86.31 0.57 8.40 16 11 N -0.64 -32.55 3.53 -722.66 -2.55 -35.10 16 12 C -0.23 -12.91 10.70 84.04 0.90 -12.01 16 13 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 14 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 15 N -0.95 -58.09 11.39 21.65 0.25 -57.85 16 16 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 C 0.13 4.87 7.72 86.32 0.67 5.53 16 21 C -0.09 -2.95 5.21 30.58 0.16 -2.79 16 22 C 0.12 3.79 6.30 86.41 0.54 4.33 16 23 C 0.54 12.49 7.46 87.66 0.65 13.15 16 24 O -0.59 -18.65 15.83 -3.01 -0.05 -18.69 16 25 C -0.20 -3.14 5.28 -11.54 -0.06 -3.20 16 26 C -0.13 -1.31 10.24 30.62 0.31 -1.00 16 27 C -0.16 -2.36 10.05 30.62 0.31 -2.05 16 28 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.84 8.07 -2.39 -0.02 0.82 16 30 H 0.08 0.77 6.00 -2.39 -0.01 0.76 16 31 H 0.15 1.45 7.64 -2.39 -0.02 1.43 16 32 H 0.12 2.09 7.19 -2.38 -0.02 2.07 16 33 H 0.12 1.30 5.89 -2.39 -0.01 1.29 16 34 H 0.08 1.46 8.07 -2.39 -0.02 1.44 16 35 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.03 1.80 7.12 -2.38 -0.02 1.78 16 38 H 0.02 0.90 8.09 -2.39 -0.02 0.88 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 41 H 0.04 1.67 7.41 -2.39 -0.02 1.65 16 42 H 0.05 2.14 8.01 -2.39 -0.02 2.12 16 43 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.07 2.06 7.49 -2.39 -0.02 2.04 16 45 H 0.07 2.45 6.98 -2.39 -0.02 2.43 16 46 H 0.15 1.59 6.44 -2.39 -0.02 1.58 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 Total: -1.00 -83.24 395.57 3.66 -79.58 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.93 Total: 12.68 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.53 Total: 22.27 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.73 Total: -123.84 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.10 Total: -39.35 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -83.24 3.66 -79.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698805937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.343 kcal (2) G-P(sol) polarization free energy of solvation -83.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds