Wall clock time and date at job start Tue Mar 31 2020 18:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 O 1.21283 * 119.99839 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.47062 * 120.93875 * 359.71996 * 6 4 3 8 8 C 1.53442 * 107.04177 * 120.28380 * 7 6 4 9 9 C 1.50295 * 111.93786 * 53.80681 * 8 7 6 10 10 H 1.09001 * 105.74113 * 195.43752 * 9 8 7 11 11 C 1.52108 * 116.66741 * 313.22663 * 9 8 7 12 12 H 1.08998 * 110.76488 * 272.66694 * 11 9 8 13 13 C 1.55998 * 102.67097 * 154.26066 * 11 9 8 14 14 C 1.55064 * 101.17425 * 322.77514 * 13 11 9 15 15 N 1.47740 * 104.87366 * 36.81998 * 14 13 11 16 16 C 1.36931 * 125.97240 * 157.71463 * 15 14 13 17 17 H 1.07998 * 120.00366 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00316 * 359.97438 * 16 15 14 19 19 N 1.31628 * 120.00004 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00290 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47361 * 60.00009 * 20 18 16 22 22 H 1.48507 * 109.47338 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47171 * 299.99821 * 20 18 16 24 24 C 1.46122 * 120.92522 * 179.97438 * 6 4 3 25 25 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 26 26 O 1.21283 * 120.00463 * 179.97438 * 25 2 1 27 27 C 1.50700 * 119.99675 * 359.72090 * 25 2 1 28 28 C 1.53005 * 117.49752 * 248.90055 * 27 25 2 29 29 C 1.53000 * 59.99996 * 252.50802 * 28 27 25 30 30 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 31 31 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 32 32 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 33 33 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 34 34 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 35 35 H 1.08997 * 109.79682 * 240.76165 * 7 6 4 36 36 H 1.09002 * 109.79257 * 1.61247 * 7 6 4 37 37 H 1.08997 * 109.97329 * 292.62830 * 8 7 6 38 38 H 1.08998 * 108.22662 * 173.80628 * 8 7 6 39 39 H 1.09008 * 111.08072 * 80.74416 * 13 11 9 40 40 H 1.09005 * 111.08841 * 204.75604 * 13 11 9 41 41 H 1.09000 * 110.36713 * 155.67612 * 14 13 11 42 42 H 1.09001 * 110.35922 * 277.87035 * 14 13 11 43 43 H 0.96993 * 120.00078 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.04525 * 352.99566 * 24 6 4 45 45 H 1.09001 * 109.03870 * 111.93892 * 24 6 4 46 46 H 1.09000 * 115.55362 * 34.60723 * 27 25 2 47 47 H 1.08994 * 117.50050 * 359.97438 * 28 27 25 48 48 H 1.09004 * 117.49949 * 145.02287 * 28 27 25 49 49 H 1.08999 * 117.50369 * 252.50866 * 29 28 27 50 50 H 1.09007 * 117.51571 * 107.48041 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0549 1.0211 -2.3427 6 7 3.1107 2.8516 -1.6671 7 6 3.5918 3.6983 -0.5650 8 6 5.1155 3.8044 -0.7117 9 6 5.5162 4.2775 -2.0808 10 1 6.5790 4.0531 -2.1719 11 6 4.8368 3.6023 -3.2624 12 1 5.3786 2.7039 -3.5581 13 6 4.9206 4.6931 -4.3744 14 6 4.6951 5.9845 -3.5462 15 7 5.3882 5.7390 -2.2648 16 6 5.8362 6.6980 -1.3961 17 1 6.3326 6.4088 -0.4815 18 6 5.6524 8.0420 -1.6908 19 7 5.0479 8.3946 -2.8056 20 14 6.2629 9.3502 -0.5053 21 1 7.7323 9.2178 -0.3359 22 1 5.9470 10.6961 -1.0477 23 1 5.5954 9.1768 0.8098 24 6 3.3658 3.2925 -3.0366 25 6 2.1389 -1.1672 -0.0005 26 8 3.3517 -1.1672 -0.0010 27 6 1.3854 -2.4723 0.0053 28 6 1.4607 -3.3258 1.2729 29 6 2.2075 -3.7627 0.0110 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5138 34 1 3.1500 1.1384 0.5137 35 1 3.1257 4.6817 -0.6245 36 1 3.3514 3.2322 0.3905 37 1 5.5761 2.8344 -0.5248 38 1 5.4805 4.5165 0.0284 39 1 5.9030 4.6968 -4.8468 40 1 4.1324 4.5592 -5.1154 41 1 5.1327 6.8431 -4.0556 42 1 3.6304 6.1463 -3.3783 43 1 4.9198 9.3337 -3.0117 44 1 3.0581 2.5067 -3.7264 45 1 2.7801 4.1899 -3.2362 46 1 0.4471 -2.4759 -0.5493 47 1 2.0555 -2.9436 2.1024 48 1 0.5716 -3.8911 1.5525 49 1 1.8099 -4.6152 -0.5395 50 1 3.2934 -3.6676 0.0102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699007284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:04 Heat of formation + Delta-G solvation = 1.173527 kcal Electronic energy + Delta-G solvation = -30324.806247 eV Core-core repulsion = 26354.236496 eV Total energy + Delta-G solvation = -3970.569752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63937 -39.75813 -38.16723 -36.44894 -35.52621 -35.06851 -32.84938 -31.69002 -30.03125 -28.92969 -27.58369 -26.79259 -25.28113 -24.27678 -23.25212 -22.70999 -22.60668 -20.18353 -19.92525 -19.00493 -18.15229 -17.75933 -17.23390 -16.61169 -16.32163 -15.64928 -15.47661 -15.10043 -15.02814 -14.61390 -14.34936 -14.10234 -13.91809 -13.54113 -13.23480 -13.10106 -12.91179 -12.87793 -12.53085 -12.41332 -12.12156 -11.96244 -11.83931 -11.73856 -11.28706 -11.17145 -11.06240 -10.89124 -10.77835 -10.76237 -10.60272 -10.20323 -10.13238 -10.00299 -9.96521 -9.83164 -9.66394 -9.49840 -8.78438 -8.65153 -8.26198 -6.83153 -5.68038 -3.07253 2.27343 2.64898 2.75794 3.31424 3.37867 3.42822 3.43878 3.59715 4.22088 4.45570 4.46380 4.58443 4.61041 4.72153 4.90414 4.97067 5.12295 5.18802 5.25531 5.26883 5.27904 5.32086 5.41272 5.44133 5.50118 5.51724 5.57827 5.65640 5.70222 5.84286 5.84900 5.92892 6.10169 6.14914 6.22252 6.31297 6.34459 6.43338 6.58521 6.69468 6.76348 6.91897 6.97848 7.11938 7.49368 7.59919 7.65909 7.83994 8.00231 8.32095 8.33889 9.19604 9.80737 10.48462 11.37464 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.002677 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.261702 B =10455.920088 C =10866.181865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.597 5.597 3 C 0.098 3.902 4 C 0.499 3.501 5 O -0.545 6.545 6 N -0.601 5.601 7 C 0.114 3.886 8 C -0.136 4.136 9 C 0.169 3.831 10 H 0.015 0.985 11 C -0.104 4.104 12 H 0.070 0.930 13 C -0.141 4.141 14 C 0.158 3.842 15 N -0.594 5.594 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.125 3.875 25 C 0.549 3.451 26 O -0.536 6.536 27 C -0.192 4.192 28 C -0.152 4.152 29 C -0.149 4.149 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.012 0.988 43 H 0.252 0.748 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 -18.382 6.725 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.329 5.329 3 C -0.029 4.029 4 C 0.285 3.715 5 O -0.423 6.423 6 N -0.333 5.333 7 C -0.008 4.008 8 C -0.176 4.176 9 C 0.061 3.939 10 H 0.032 0.968 11 C -0.124 4.124 12 H 0.088 0.912 13 C -0.181 4.181 14 C 0.033 3.967 15 N -0.320 5.320 16 C -0.348 4.348 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.003 3.997 25 C 0.338 3.662 26 O -0.412 6.412 27 C -0.213 4.213 28 C -0.189 4.189 29 C -0.186 4.186 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.246 -18.482 6.253 22.038 hybrid contribution 0.198 0.965 0.562 1.135 sum -10.048 -17.516 6.815 21.313 Atomic orbital electron populations 1.21822 0.78750 1.03753 1.01608 1.47306 1.07190 1.04824 1.73569 1.21367 1.00060 0.86364 0.95088 1.20988 0.78172 0.80524 0.91804 1.90652 1.51910 1.53610 1.46085 1.47998 1.55252 1.21784 1.08307 1.21869 0.95761 0.95191 0.87983 1.21705 0.94519 1.00821 1.00527 1.19803 0.96789 0.86044 0.91216 0.96769 1.21865 0.94956 0.98153 0.97411 0.91187 1.23291 1.00769 0.97410 0.96585 1.21888 0.94979 0.94181 0.85648 1.44861 1.67772 0.98329 1.21045 1.18945 1.30382 0.85456 0.99978 0.90567 1.24755 1.01040 0.96932 0.97872 1.69825 1.47567 1.15537 1.24068 0.86201 0.78449 0.81121 0.79995 1.21244 1.21674 1.21291 1.21189 0.96186 1.00003 0.82327 1.19640 0.87258 0.84302 0.75019 1.90704 1.13894 1.87123 1.49502 1.22204 1.02812 0.90713 1.05589 1.22933 1.03181 1.01487 0.91344 1.22966 1.00209 0.95272 1.00137 0.92242 0.90926 0.90707 0.87449 0.86846 0.89804 0.90960 0.92565 0.90194 0.91914 0.92103 0.88218 0.97002 0.93733 0.90074 0.91289 0.85638 0.88271 0.87782 0.87888 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.26 59.84 0.61 1.27 16 2 N -0.60 -7.00 2.36 -182.96 -0.43 -7.43 16 3 C 0.10 1.20 4.24 -5.19 -0.02 1.17 16 4 C 0.50 7.96 7.77 -10.98 -0.09 7.88 16 5 O -0.54 -10.38 15.84 5.55 0.09 -10.29 16 6 N -0.60 -9.72 2.92 -173.86 -0.51 -10.23 16 7 C 0.11 1.74 6.48 -3.51 -0.02 1.72 16 8 C -0.14 -2.35 5.66 -27.85 -0.16 -2.51 16 9 C 0.17 3.40 2.73 -68.99 -0.19 3.22 16 10 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 16 11 C -0.10 -1.90 3.41 -89.98 -0.31 -2.20 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 13 C -0.14 -2.68 6.39 -24.04 -0.15 -2.83 16 14 C 0.16 3.69 5.51 -2.27 -0.01 3.68 16 15 N -0.59 -14.33 3.33 -164.41 -0.55 -14.88 16 16 C -0.22 -5.76 9.67 -15.06 -0.15 -5.91 16 17 H 0.08 1.93 7.14 -52.49 -0.37 1.55 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.11 10.17 55.49 0.56 -25.55 16 20 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.13 2.18 5.63 -4.75 -0.03 2.15 16 25 C 0.55 7.31 7.46 -10.98 -0.08 7.22 16 26 O -0.54 -9.20 15.84 5.55 0.09 -9.11 16 27 C -0.19 -1.81 5.29 -91.77 -0.49 -2.29 16 28 C -0.15 -1.10 10.23 -26.73 -0.27 -1.37 16 29 C -0.15 -1.28 10.04 -26.73 -0.27 -1.55 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.07 0.50 6.00 -51.93 -0.31 0.19 16 33 H 0.11 0.98 7.78 -51.93 -0.40 0.57 16 34 H 0.11 1.44 7.10 -51.93 -0.37 1.07 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 0.85 5.97 -51.93 -0.31 0.54 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.45 6.93 -51.93 -0.36 1.09 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 41 H 0.10 2.66 6.04 -51.93 -0.31 2.34 16 42 H 0.01 0.30 7.44 -51.93 -0.39 -0.09 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 44 H 0.08 1.43 6.97 -51.93 -0.36 1.07 16 45 H 0.07 1.25 6.80 -51.93 -0.35 0.90 16 46 H 0.13 0.94 6.45 -51.93 -0.33 0.60 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.11 1.13 7.67 -51.92 -0.40 0.73 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -33.75 387.43 -9.69 -43.44 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.05 Total: 2.50 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.71 Total: 9.28 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.92 Total: -58.08 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.18 Total: -19.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.75 -9.69 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699007284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.612 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds