Wall clock time and date at job start Tue Mar 31 2020 18:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99749 * 2 1 4 4 C 1.50696 * 109.47156 * 90.00464 * 3 2 1 5 5 O 1.21277 * 120.00122 * 359.97438 * 4 3 2 6 6 N 1.34787 * 119.99927 * 179.97438 * 4 3 2 7 7 C 1.47145 * 121.00867 * 0.02562 * 6 4 3 8 8 C 1.53052 * 107.66897 * 237.47147 * 7 6 4 9 9 C 1.51146 * 111.10541 * 305.57010 * 8 7 6 10 10 H 1.09001 * 108.46322 * 174.65398 * 9 8 7 11 11 C 1.53999 * 113.16966 * 55.14595 * 9 8 7 12 12 H 1.08995 * 112.71791 * 75.20657 * 11 9 8 13 13 C 1.56014 * 100.38402 * 196.35171 * 11 9 8 14 14 C 1.54517 * 102.70525 * 36.66885 * 13 11 9 15 15 N 1.46471 * 113.21921 * 294.93936 * 9 8 7 16 16 C 1.36936 * 126.05546 * 330.45974 * 15 9 8 17 17 H 1.07998 * 119.99707 * 9.57627 * 16 15 9 18 18 C 1.38814 * 120.00013 * 189.58481 * 16 15 9 19 19 N 1.31614 * 119.99949 * 209.01345 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 29.00987 * 18 16 15 21 21 H 1.48496 * 109.47296 * 275.38644 * 20 18 16 22 22 H 1.48499 * 109.47266 * 155.38285 * 20 18 16 23 23 H 1.48507 * 109.47126 * 35.38239 * 20 18 16 24 24 C 1.46519 * 121.00869 * 180.02562 * 6 4 3 25 25 C 1.34775 * 120.00024 * 180.02562 * 2 1 3 26 26 O 1.21282 * 119.99918 * 179.97438 * 25 2 1 27 27 C 1.50697 * 120.00432 * 359.97438 * 25 2 1 28 28 C 1.53002 * 117.50199 * 248.62783 * 27 25 2 29 29 C 1.52991 * 117.50364 * 180.02562 * 27 25 2 30 30 H 1.09001 * 109.47537 * 90.00165 * 1 2 3 31 31 H 1.09005 * 109.46779 * 209.99774 * 1 2 3 32 32 H 1.09004 * 109.47107 * 329.99353 * 1 2 3 33 33 H 1.08997 * 109.47388 * 329.99938 * 3 2 1 34 34 H 1.09004 * 109.47013 * 210.00345 * 3 2 1 35 35 H 1.08999 * 109.81804 * 117.92823 * 7 6 4 36 36 H 1.08999 * 109.87197 * 357.03680 * 7 6 4 37 37 H 1.09005 * 109.14519 * 185.15830 * 8 7 6 38 38 H 1.08991 * 109.11346 * 65.96510 * 8 7 6 39 39 H 1.09001 * 110.78205 * 155.14731 * 13 11 9 40 40 H 1.08999 * 110.78485 * 278.58162 * 13 11 9 41 41 H 1.08996 * 110.01223 * 218.06202 * 14 13 11 42 42 H 1.09006 * 109.79928 * 96.81929 * 14 13 11 43 43 H 0.97000 * 120.00199 * 4.89319 * 19 18 16 44 44 H 1.08994 * 109.34852 * 244.61372 * 24 6 4 45 45 H 1.08996 * 109.34986 * 4.16279 * 24 6 4 46 46 H 1.08999 * 115.54665 * 34.33293 * 27 25 2 47 47 H 1.08999 * 117.49399 * 359.97438 * 28 27 25 48 48 H 1.08996 * 117.49857 * 145.01634 * 28 27 25 49 49 H 1.08998 * 117.50302 * 214.98552 * 29 27 25 50 50 H 1.09006 * 117.49568 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 8 2.0543 1.0214 2.3426 6 7 3.1117 2.8511 1.6670 7 6 3.5994 3.6962 0.5656 8 6 5.1118 3.8560 0.7374 9 6 5.4508 4.3809 2.1137 10 1 6.5353 4.3878 2.2231 11 6 4.8696 3.5201 3.2506 12 1 5.4159 2.5880 3.3943 13 6 5.0008 4.5107 4.4487 14 6 4.6900 5.8764 3.7960 15 7 4.9548 5.7383 2.3523 16 6 4.7745 6.7089 1.4033 17 1 4.8555 6.4611 0.3553 18 6 4.4878 8.0114 1.7885 19 7 3.7786 8.7901 0.9992 20 14 5.1085 8.6590 3.4270 21 1 4.1598 8.2746 4.5027 22 1 5.2148 10.1389 3.3662 23 1 6.4447 8.0782 3.7147 24 6 3.3686 3.2948 3.0396 25 6 2.1389 -1.1672 -0.0005 26 8 3.3517 -1.1672 -0.0010 27 6 1.3855 -2.4723 -0.0005 28 6 1.4611 -3.3318 1.2631 29 6 2.2075 -3.7626 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6084 2.0284 -0.5138 34 1 3.1498 1.1384 -0.5139 35 1 3.1174 4.6729 0.6078 36 1 3.3846 3.2191 -0.3906 37 1 5.4852 4.5529 -0.0131 38 1 5.5914 2.8876 0.5960 39 1 4.2732 4.2764 5.2257 40 1 6.0140 4.4999 4.8503 41 1 5.3340 6.6472 4.2193 42 1 3.6433 6.1336 3.9584 43 1 3.3963 8.4335 0.1822 44 1 2.8340 4.2265 3.2240 45 1 3.0160 2.5347 3.7368 46 1 0.4469 -2.4733 -0.5548 47 1 2.0561 -2.9533 2.0942 48 1 0.5721 -3.8982 1.5403 49 1 1.8099 -4.6127 -0.5549 50 1 3.2934 -3.6675 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699007285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:08 Heat of formation + Delta-G solvation = 2.525252 kcal Electronic energy + Delta-G solvation = -30662.376595 eV Core-core repulsion = 26691.865459 eV Total energy + Delta-G solvation = -3970.511136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.65889 -39.86983 -38.38512 -36.44655 -35.53448 -35.13837 -33.00669 -31.71251 -30.42800 -29.25607 -27.69959 -26.80742 -25.34496 -23.97619 -23.11585 -22.76969 -22.67566 -20.65188 -20.01743 -19.00497 -18.16300 -17.74401 -17.34050 -16.97530 -16.47716 -15.64584 -15.58631 -15.43428 -14.98349 -14.72696 -14.57117 -14.23295 -13.90511 -13.54240 -13.26772 -13.18698 -13.09864 -12.83322 -12.65712 -12.54506 -12.46282 -12.01614 -11.95992 -11.80349 -11.59337 -11.37133 -11.14276 -10.87943 -10.86545 -10.77046 -10.70842 -10.44345 -10.16079 -10.02204 -9.95979 -9.87801 -9.56563 -9.19624 -8.78645 -8.49208 -8.25674 -7.08446 -6.38227 -3.18921 2.28446 2.62133 2.75730 3.32813 3.43969 3.53602 3.62489 3.70347 4.23425 4.50961 4.58432 4.62239 4.63403 4.77713 4.83881 4.88886 4.97311 5.05058 5.12830 5.16530 5.29798 5.30747 5.33266 5.38662 5.42993 5.45368 5.48437 5.56388 5.69137 5.73113 5.81007 5.83365 5.86467 5.98666 6.07246 6.11047 6.19187 6.23345 6.39508 6.50383 6.52314 6.60008 6.72637 6.78984 6.83364 7.12412 7.66075 7.68804 7.99742 8.31211 8.33453 8.98452 9.57779 10.25777 11.10976 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.002902 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.249631 B = 9645.538652 C =10015.582747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.097 3.903 4 C 0.499 3.501 5 O -0.546 6.546 6 N -0.599 5.599 7 C 0.113 3.887 8 C -0.126 4.126 9 C 0.170 3.830 10 H 0.021 0.979 11 C -0.115 4.115 12 H 0.084 0.916 13 C -0.126 4.126 14 C 0.117 3.883 15 N -0.599 5.599 16 C -0.327 4.327 17 H 0.082 0.918 18 C -0.011 4.011 19 N -0.913 5.913 20 Si 1.050 2.950 21 H -0.295 1.295 22 H -0.301 1.301 23 H -0.294 1.294 24 C 0.127 3.873 25 C 0.550 3.450 26 O -0.537 6.537 27 C -0.193 4.193 28 C -0.149 4.149 29 C -0.149 4.149 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.040 0.960 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.124 0.876 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 -20.473 -2.150 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.329 5.329 3 C -0.029 4.029 4 C 0.286 3.714 5 O -0.424 6.424 6 N -0.332 5.332 7 C -0.009 4.009 8 C -0.165 4.165 9 C 0.062 3.938 10 H 0.038 0.962 11 C -0.135 4.135 12 H 0.102 0.898 13 C -0.165 4.165 14 C -0.008 4.008 15 N -0.326 5.326 16 C -0.454 4.454 17 H 0.099 0.901 18 C -0.213 4.213 19 N -0.553 5.553 20 Si 0.884 3.116 21 H -0.223 1.223 22 H -0.229 1.229 23 H -0.222 1.222 24 C 0.005 3.995 25 C 0.338 3.662 26 O -0.414 6.414 27 C -0.214 4.214 28 C -0.187 4.187 29 C -0.187 4.187 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.142 0.858 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.313 -19.382 -0.825 20.401 hybrid contribution -0.006 -1.001 -0.885 1.336 sum -6.319 -20.384 -1.710 21.409 Atomic orbital electron populations 1.21812 0.78745 1.03928 1.01508 1.47292 1.07198 1.04811 1.73596 1.21359 1.00044 0.86377 0.95111 1.20977 0.78152 0.80513 0.91790 1.90643 1.52006 1.53661 1.46079 1.48073 1.55090 1.21759 1.08272 1.21819 0.95592 0.95772 0.87738 1.21526 0.95235 1.00417 0.99345 1.20217 0.95730 0.86045 0.91792 0.96184 1.22779 0.95941 0.97819 0.96994 0.89813 1.22819 1.01450 0.95374 0.96811 1.21732 0.98624 0.94775 0.85655 1.44683 1.76655 1.08689 1.02580 1.19944 1.48305 0.89003 0.88116 0.90050 1.25658 0.98331 0.92609 1.04676 1.70911 1.30047 1.39696 1.14620 0.84020 0.76470 0.74903 0.76254 1.22277 1.22887 1.22190 1.21502 0.95505 1.00177 0.82346 1.19670 0.87258 0.84307 0.74958 1.90695 1.13932 1.87153 1.49574 1.22155 1.02561 0.90591 1.06074 1.22931 1.03180 1.01029 0.91537 1.22957 1.00138 0.95126 1.00438 0.92341 0.90594 0.90844 0.87437 0.86902 0.88954 0.91098 0.90366 0.92440 0.91176 0.91432 0.95404 0.94243 0.92687 0.90709 0.90189 0.85812 0.88075 0.87767 0.87922 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.01 59.85 0.60 1.28 16 2 N -0.60 -7.14 2.36 -182.96 -0.43 -7.57 16 3 C 0.10 1.23 4.24 -5.20 -0.02 1.21 16 4 C 0.50 8.03 7.78 -10.98 -0.09 7.94 16 5 O -0.55 -10.34 15.86 5.56 0.09 -10.26 16 6 N -0.60 -9.76 2.93 -172.98 -0.51 -10.27 16 7 C 0.11 1.78 6.26 -3.66 -0.02 1.76 16 8 C -0.13 -2.14 5.15 -27.64 -0.14 -2.28 16 9 C 0.17 3.24 2.85 -68.36 -0.19 3.05 16 10 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 11 C -0.11 -1.93 3.86 -88.36 -0.34 -2.28 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -2.10 6.28 -24.32 -0.15 -2.25 16 14 C 0.12 2.46 4.20 -2.74 -0.01 2.45 16 15 N -0.60 -13.58 3.01 -164.48 -0.50 -14.07 16 16 C -0.33 -8.55 9.18 -15.06 -0.14 -8.69 16 17 H 0.08 2.19 6.87 -52.49 -0.36 1.83 16 18 C -0.01 -0.32 5.42 -17.43 -0.09 -0.42 16 19 N -0.91 -27.24 13.70 55.49 0.76 -26.48 16 20 Si 1.05 26.09 24.72 -169.99 -4.20 21.89 16 21 H -0.29 -6.96 6.70 56.52 0.38 -6.58 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.29 -7.11 6.82 56.52 0.39 -6.72 16 24 C 0.13 2.17 5.45 -3.91 -0.02 2.15 16 25 C 0.55 7.35 7.46 -10.99 -0.08 7.27 16 26 O -0.54 -9.20 15.84 5.56 0.09 -9.12 16 27 C -0.19 -1.82 4.80 -91.78 -0.44 -2.26 16 28 C -0.15 -1.30 10.23 -26.75 -0.27 -1.57 16 29 C -0.15 -1.29 10.04 -26.76 -0.27 -1.56 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.54 6.64 -51.93 -0.34 0.20 16 32 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.11 1.05 7.83 -51.93 -0.41 0.64 16 34 H 0.11 1.46 7.06 -51.93 -0.37 1.10 16 35 H 0.09 1.71 7.48 -51.93 -0.39 1.32 16 36 H 0.07 0.89 6.00 -51.93 -0.31 0.58 16 37 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.63 4.02 -51.93 -0.21 0.42 16 42 H 0.04 0.87 7.46 -51.93 -0.39 0.49 16 43 H 0.26 7.70 8.73 -40.82 -0.36 7.34 16 44 H 0.07 1.39 6.82 -51.93 -0.35 1.03 16 45 H 0.08 1.38 6.99 -51.93 -0.36 1.01 16 46 H 0.12 0.83 7.26 -51.93 -0.38 0.45 16 47 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -34.21 381.30 -8.69 -42.90 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.04 Total: 1.43 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.69 Total: 5.80 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.67 Total: -58.39 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.18 Total: -19.37 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.20 Total: 21.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.21 -8.69 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699007285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.423 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds