Wall clock time and date at job start Tue Mar 31 2020 18:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99749 * 2 1 4 4 C 1.50696 * 109.47156 * 90.00464 * 3 2 1 5 5 O 1.21277 * 120.00122 * 359.97438 * 4 3 2 6 6 N 1.34787 * 119.99927 * 179.97438 * 4 3 2 7 7 C 1.47145 * 121.00867 * 0.02562 * 6 4 3 8 8 C 1.53052 * 107.66897 * 237.47147 * 7 6 4 9 9 C 1.51146 * 111.10541 * 305.57010 * 8 7 6 10 10 H 1.09001 * 108.46322 * 174.65398 * 9 8 7 11 11 C 1.53999 * 113.16966 * 55.14595 * 9 8 7 12 12 H 1.08995 * 112.71791 * 75.20657 * 11 9 8 13 13 C 1.56014 * 100.38402 * 196.35171 * 11 9 8 14 14 C 1.54517 * 102.70525 * 36.66885 * 13 11 9 15 15 N 1.46471 * 113.21921 * 294.93936 * 9 8 7 16 16 C 1.36936 * 126.05546 * 330.45974 * 15 9 8 17 17 H 1.07998 * 119.99707 * 9.57627 * 16 15 9 18 18 C 1.38814 * 120.00013 * 189.58481 * 16 15 9 19 19 N 1.31614 * 119.99949 * 209.01345 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 29.00987 * 18 16 15 21 21 H 1.48496 * 109.47296 * 275.38644 * 20 18 16 22 22 H 1.48499 * 109.47266 * 155.38285 * 20 18 16 23 23 H 1.48507 * 109.47126 * 35.38239 * 20 18 16 24 24 C 1.46519 * 121.00869 * 180.02562 * 6 4 3 25 25 C 1.34775 * 120.00024 * 180.02562 * 2 1 3 26 26 O 1.21282 * 119.99918 * 179.97438 * 25 2 1 27 27 C 1.50697 * 120.00432 * 359.97438 * 25 2 1 28 28 C 1.53002 * 117.50199 * 248.62783 * 27 25 2 29 29 C 1.52991 * 117.50364 * 180.02562 * 27 25 2 30 30 H 1.09001 * 109.47537 * 90.00165 * 1 2 3 31 31 H 1.09005 * 109.46779 * 209.99774 * 1 2 3 32 32 H 1.09004 * 109.47107 * 329.99353 * 1 2 3 33 33 H 1.08997 * 109.47388 * 329.99938 * 3 2 1 34 34 H 1.09004 * 109.47013 * 210.00345 * 3 2 1 35 35 H 1.08999 * 109.81804 * 117.92823 * 7 6 4 36 36 H 1.08999 * 109.87197 * 357.03680 * 7 6 4 37 37 H 1.09005 * 109.14519 * 185.15830 * 8 7 6 38 38 H 1.08991 * 109.11346 * 65.96510 * 8 7 6 39 39 H 1.09001 * 110.78205 * 155.14731 * 13 11 9 40 40 H 1.08999 * 110.78485 * 278.58162 * 13 11 9 41 41 H 1.08996 * 110.01223 * 218.06202 * 14 13 11 42 42 H 1.09006 * 109.79928 * 96.81929 * 14 13 11 43 43 H 0.97000 * 120.00199 * 4.89319 * 19 18 16 44 44 H 1.08994 * 109.34852 * 244.61372 * 24 6 4 45 45 H 1.08996 * 109.34986 * 4.16279 * 24 6 4 46 46 H 1.08999 * 115.54665 * 34.33293 * 27 25 2 47 47 H 1.08999 * 117.49399 * 359.97438 * 28 27 25 48 48 H 1.08996 * 117.49857 * 145.01634 * 28 27 25 49 49 H 1.08998 * 117.50302 * 214.98552 * 29 27 25 50 50 H 1.09006 * 117.49568 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 8 2.0543 1.0214 2.3426 6 7 3.1117 2.8511 1.6670 7 6 3.5994 3.6962 0.5656 8 6 5.1118 3.8560 0.7374 9 6 5.4508 4.3809 2.1137 10 1 6.5353 4.3878 2.2231 11 6 4.8696 3.5201 3.2506 12 1 5.4159 2.5880 3.3943 13 6 5.0008 4.5107 4.4487 14 6 4.6900 5.8764 3.7960 15 7 4.9548 5.7383 2.3523 16 6 4.7745 6.7089 1.4033 17 1 4.8555 6.4611 0.3553 18 6 4.4878 8.0114 1.7885 19 7 3.7786 8.7901 0.9992 20 14 5.1085 8.6590 3.4270 21 1 4.1598 8.2746 4.5027 22 1 5.2148 10.1389 3.3662 23 1 6.4447 8.0782 3.7147 24 6 3.3686 3.2948 3.0396 25 6 2.1389 -1.1672 -0.0005 26 8 3.3517 -1.1672 -0.0010 27 6 1.3855 -2.4723 -0.0005 28 6 1.4611 -3.3318 1.2631 29 6 2.2075 -3.7626 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6084 2.0284 -0.5138 34 1 3.1498 1.1384 -0.5139 35 1 3.1174 4.6729 0.6078 36 1 3.3846 3.2191 -0.3906 37 1 5.4852 4.5529 -0.0131 38 1 5.5914 2.8876 0.5960 39 1 4.2732 4.2764 5.2257 40 1 6.0140 4.4999 4.8503 41 1 5.3340 6.6472 4.2193 42 1 3.6433 6.1336 3.9584 43 1 3.3963 8.4335 0.1822 44 1 2.8340 4.2265 3.2240 45 1 3.0160 2.5347 3.7368 46 1 0.4469 -2.4733 -0.5548 47 1 2.0561 -2.9533 2.0942 48 1 0.5721 -3.8982 1.5403 49 1 1.8099 -4.6127 -0.5549 50 1 3.2934 -3.6675 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699007285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:07 Heat of formation + Delta-G solvation = -19.890330 kcal Electronic energy + Delta-G solvation = -30663.348608 eV Core-core repulsion = 26691.865459 eV Total energy + Delta-G solvation = -3971.483149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84131 -41.05446 -39.75740 -37.24089 -36.69426 -36.43428 -34.86409 -33.28707 -31.99131 -30.51213 -29.10077 -27.61895 -26.78969 -25.43844 -24.29643 -24.23706 -23.33113 -22.32077 -21.24986 -20.03213 -19.63403 -19.10405 -18.60994 -18.33402 -17.59415 -17.20213 -16.71382 -16.53854 -16.50180 -15.97447 -15.73648 -15.46342 -15.18785 -15.09499 -14.63002 -14.62126 -14.20380 -14.10162 -13.81632 -13.63174 -13.58239 -13.32381 -13.19638 -13.00800 -12.89761 -12.72107 -12.52322 -12.45297 -12.28839 -12.04268 -11.72036 -11.55025 -11.50745 -11.45702 -11.45368 -11.14811 -11.07686 -10.96615 -10.52119 -9.77516 -9.68168 -9.03166 -8.56212 -5.28802 1.31546 1.43375 1.49795 1.52534 1.70969 1.72074 2.14231 2.58688 2.91119 3.04395 3.31696 3.43912 3.47063 3.64478 3.79915 3.82823 3.87748 3.96104 4.04991 4.05769 4.11103 4.16533 4.23116 4.28256 4.32545 4.34039 4.43058 4.53765 4.68702 4.70434 4.71884 4.72830 4.83893 4.85582 4.87871 4.90486 4.99718 5.01472 5.09919 5.14354 5.20321 5.21907 5.24620 5.29462 5.48078 5.72938 6.20683 6.24252 6.37067 6.89201 6.99875 7.09221 7.57313 8.24404 8.95522 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.002902 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.249631 B = 9645.538652 C =10015.582747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.098 3.902 4 C 0.497 3.503 5 O -0.576 6.576 6 N -0.601 5.601 7 C 0.122 3.878 8 C -0.124 4.124 9 C 0.161 3.839 10 H 0.018 0.982 11 C -0.104 4.104 12 H 0.103 0.897 13 C -0.114 4.114 14 C 0.108 3.892 15 N -0.613 5.613 16 C -0.297 4.297 17 H 0.066 0.934 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 1.087 2.913 21 H -0.278 1.278 22 H -0.313 1.313 23 H -0.284 1.284 24 C 0.130 3.870 25 C 0.536 3.464 26 O -0.587 6.587 27 C -0.196 4.196 28 C -0.146 4.146 29 C -0.147 4.147 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.020 0.980 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.159 0.841 47 H 0.072 0.928 48 H 0.136 0.864 49 H 0.134 0.866 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -23.185 -1.905 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.029 4.029 4 C 0.286 3.714 5 O -0.456 6.456 6 N -0.333 5.333 7 C 0.000 4.000 8 C -0.163 4.163 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.124 4.124 12 H 0.121 0.879 13 C -0.152 4.152 14 C -0.017 4.017 15 N -0.340 5.340 16 C -0.425 4.425 17 H 0.083 0.917 18 C -0.264 4.264 19 N -0.598 5.598 20 Si 0.917 3.083 21 H -0.205 1.205 22 H -0.242 1.242 23 H -0.211 1.211 24 C 0.007 3.993 25 C 0.327 3.673 26 O -0.467 6.467 27 C -0.217 4.217 28 C -0.183 4.183 29 C -0.185 4.185 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.177 0.823 47 H 0.091 0.909 48 H 0.154 0.846 49 H 0.152 0.848 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.253 -22.132 -0.565 23.297 hybrid contribution 0.292 -0.248 -0.993 1.064 sum -6.961 -22.380 -1.558 23.489 Atomic orbital electron populations 1.22082 0.76395 1.04403 1.03640 1.47509 1.08707 1.04148 1.72530 1.21423 1.00942 0.87744 0.92765 1.21614 0.77055 0.79764 0.92993 1.90624 1.53137 1.54448 1.47425 1.48123 1.55177 1.22019 1.07994 1.21709 0.94373 0.94663 0.89272 1.21484 0.96188 1.00883 0.97735 1.20452 0.95554 0.84646 0.93908 0.96443 1.22725 0.95611 0.98112 0.95945 0.87919 1.22807 1.03290 0.92225 0.96918 1.21856 0.97583 0.97338 0.84908 1.44761 1.76737 1.09453 1.03010 1.19883 1.44818 0.89501 0.88317 0.91650 1.26511 0.99332 0.93693 1.06858 1.70985 1.33005 1.40430 1.15357 0.83496 0.76848 0.73671 0.74240 1.20530 1.24223 1.21081 1.21389 0.95525 0.99241 0.83114 1.20448 0.87043 0.85860 0.73988 1.90661 1.16142 1.87977 1.51952 1.22292 1.03563 0.88716 1.07083 1.22980 1.03974 1.00883 0.90510 1.23020 0.98811 0.95833 1.00798 0.89295 0.89313 0.91280 0.84304 0.87144 0.92119 0.87556 0.91711 0.90459 0.88703 0.89603 0.96208 0.95650 0.93824 0.92609 0.90133 0.82347 0.90915 0.84594 0.84768 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.01 127.77 1.28 2.30 16 2 N -0.60 -13.10 2.36 -851.14 -2.01 -15.10 16 3 C 0.10 2.29 4.24 85.63 0.36 2.65 16 4 C 0.50 15.38 7.78 87.65 0.68 16.06 16 5 O -0.58 -21.34 15.86 -3.02 -0.05 -21.39 16 6 N -0.60 -18.91 2.93 -819.56 -2.40 -21.31 16 7 C 0.12 3.73 6.26 86.27 0.54 4.27 16 8 C -0.12 -4.08 5.15 30.01 0.15 -3.93 16 9 C 0.16 5.95 2.85 44.73 0.13 6.08 16 10 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 11 C -0.10 -3.28 3.86 -9.33 -0.04 -3.31 16 12 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 13 C -0.11 -3.51 6.28 32.15 0.20 -3.31 16 14 C 0.11 4.42 4.20 86.72 0.36 4.78 16 15 N -0.61 -27.59 3.01 -674.29 -2.03 -29.62 16 16 C -0.30 -15.77 9.18 84.03 0.77 -15.00 16 17 H 0.07 3.63 6.87 -2.91 -0.02 3.61 16 18 C -0.07 -3.93 5.42 84.86 0.46 -3.47 16 19 N -0.95 -58.82 13.70 21.65 0.30 -58.53 16 20 Si 1.09 53.46 24.72 68.60 1.70 55.16 16 21 H -0.28 -12.77 6.70 99.48 0.67 -12.10 16 22 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 23 H -0.28 -13.27 6.82 99.48 0.68 -12.59 16 24 C 0.13 4.30 5.45 86.46 0.47 4.77 16 25 C 0.54 13.67 7.46 87.66 0.65 14.33 16 26 O -0.59 -20.14 15.84 -3.04 -0.05 -20.18 16 27 C -0.20 -3.23 4.80 -11.54 -0.06 -3.28 16 28 C -0.15 -2.25 10.23 30.58 0.31 -1.94 16 29 C -0.15 -2.26 10.04 30.58 0.31 -1.96 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.97 6.64 -2.38 -0.02 0.95 16 32 H 0.07 1.01 8.07 -2.39 -0.02 0.99 16 33 H 0.14 2.33 7.83 -2.39 -0.02 2.31 16 34 H 0.11 2.69 7.06 -2.38 -0.02 2.67 16 35 H 0.06 2.27 7.48 -2.39 -0.02 2.25 16 36 H 0.11 2.47 6.00 -2.39 -0.01 2.46 16 37 H 0.06 2.31 7.04 -2.38 -0.02 2.29 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 2.48 7.97 -2.39 -0.02 2.46 16 40 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.02 0.88 4.02 -2.39 -0.01 0.87 16 42 H 0.03 1.11 7.46 -2.38 -0.02 1.10 16 43 H 0.25 15.44 8.73 -92.71 -0.81 14.63 16 44 H 0.06 2.05 6.82 -2.39 -0.02 2.04 16 45 H 0.08 2.67 6.99 -2.39 -0.02 2.65 16 46 H 0.16 1.45 7.26 -2.39 -0.02 1.43 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.08 1.69 7.67 -2.38 -0.02 1.68 16 Total: -1.00 -77.64 381.30 2.88 -74.76 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.83 Total: 17.17 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 6.60 Total: 19.05 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.15 Total: -124.56 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.10 Total: -41.57 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.70 Total: 55.16 kcal Total: -77.64 2.88 -74.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699007285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.870 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds