Wall clock time and date at job start Tue Mar 31 2020 18:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00247 * 2 1 4 4 C 1.50696 * 109.46770 * 90.00205 * 3 2 1 5 5 O 1.21284 * 120.00276 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.46801 * 119.61761 * 0.02562 * 6 4 3 8 8 C 1.53455 * 107.65952 * 232.18626 * 7 6 4 9 9 C 1.52758 * 108.48260 * 302.05929 * 8 7 6 10 10 C 1.52945 * 110.77261 * 63.64646 * 9 8 7 11 11 H 1.09000 * 112.27323 * 71.22771 * 10 9 8 12 12 C 1.55527 * 107.00815 * 195.23332 * 10 9 8 13 13 N 1.48545 * 104.59842 * 77.74837 * 12 10 9 14 14 C 1.36930 * 125.78199 * 204.63369 * 13 12 10 15 15 H 1.08007 * 119.99901 * 354.68370 * 14 13 12 16 16 C 1.38814 * 120.00205 * 174.68037 * 14 13 12 17 17 N 1.31616 * 119.99800 * 7.03813 * 16 14 13 18 18 Si 1.86799 * 120.00090 * 187.03566 * 16 14 13 19 19 H 1.48507 * 109.47182 * 94.98686 * 18 16 14 20 20 H 1.48504 * 109.47138 * 214.98602 * 18 16 14 21 21 H 1.48498 * 109.47381 * 334.98962 * 18 16 14 22 22 C 1.47283 * 108.51691 * 24.55612 * 13 12 10 23 23 C 1.45174 * 119.61463 * 179.72380 * 6 4 3 24 24 H 1.08998 * 109.71034 * 12.22627 * 23 6 4 25 25 C 1.34781 * 119.99959 * 180.02562 * 2 1 3 26 26 O 1.21277 * 119.99903 * 179.97438 * 25 2 1 27 27 C 1.50706 * 119.99662 * 359.97438 * 25 2 1 28 28 C 1.52994 * 117.49777 * 248.62068 * 27 25 2 29 29 C 1.52999 * 60.00257 * 252.51465 * 28 27 25 30 30 H 1.09003 * 109.46919 * 89.99696 * 1 2 3 31 31 H 1.09002 * 109.46772 * 329.99916 * 1 2 3 32 32 H 1.09001 * 109.47391 * 209.99513 * 1 2 3 33 33 H 1.09003 * 109.47310 * 209.99749 * 3 2 1 34 34 H 1.08993 * 109.47086 * 330.00483 * 3 2 1 35 35 H 1.09005 * 109.82173 * 351.72383 * 7 6 4 36 36 H 1.09002 * 109.82074 * 112.64618 * 7 6 4 37 37 H 1.09000 * 109.63082 * 61.75510 * 8 7 6 38 38 H 1.08997 * 109.63520 * 182.16340 * 8 7 6 39 39 H 1.09000 * 109.21160 * 183.97346 * 9 8 7 40 40 H 1.08998 * 109.21767 * 303.35184 * 9 8 7 41 41 H 1.08999 * 110.39339 * 196.65008 * 12 10 9 42 42 H 1.09006 * 110.39679 * 319.05183 * 12 10 9 43 43 H 0.96996 * 120.00048 * 179.97438 * 17 16 14 44 44 H 1.08994 * 109.98901 * 239.70069 * 22 13 12 45 45 H 1.08997 * 110.02170 * 118.40294 * 22 13 12 46 46 H 1.08997 * 115.55196 * 34.33459 * 27 25 2 47 47 H 1.09000 * 117.50234 * 0.02562 * 28 27 25 48 48 H 1.09000 * 117.49870 * 145.01966 * 28 27 25 49 49 H 1.08997 * 117.49940 * 252.51584 * 29 28 27 50 50 H 1.09001 * 117.49710 * 107.49224 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 1.4208 5 8 2.0542 1.0213 2.3427 6 7 3.1109 2.8514 1.6671 7 6 3.5831 3.6717 0.5450 8 6 5.0763 3.9481 0.7665 9 6 5.2447 4.6467 2.1145 10 6 4.8022 3.7326 3.2582 11 1 5.4968 2.9084 3.4206 12 6 4.6340 4.6290 4.5179 13 7 3.3314 5.3146 4.3183 14 6 2.9630 6.5110 4.8733 15 1 3.6113 6.9975 5.5871 16 6 1.7564 7.0985 4.5185 17 7 0.9044 6.4442 3.7581 18 14 1.3419 8.8175 5.1205 19 1 1.7240 9.8104 4.0843 20 1 -0.1168 8.9119 5.3825 21 1 2.0889 9.0970 6.3730 22 6 2.5025 4.4919 3.4210 23 6 3.3430 3.2654 3.0391 24 1 3.1143 2.4418 3.7154 25 6 2.1389 -1.1672 -0.0005 26 8 3.3517 -1.1672 -0.0010 27 6 1.3853 -2.4723 -0.0005 28 6 1.4609 -3.3318 1.2630 29 6 2.2074 -3.7627 -0.0011 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 0.8900 0.5139 32 1 -0.3634 -0.8900 0.5138 33 1 3.1500 1.1384 -0.5138 34 1 1.6085 2.0283 -0.5137 35 1 3.4420 3.1327 -0.3919 36 1 3.0332 4.6124 0.5177 37 1 5.6263 3.0070 0.7704 38 1 5.4523 4.5890 -0.0309 39 1 6.2928 4.9121 2.2525 40 1 4.6403 5.5537 2.1266 41 1 4.6093 4.0166 5.4193 42 1 5.4416 5.3589 4.5755 43 1 0.0611 6.8545 3.5104 44 1 2.2446 5.0598 2.5271 45 1 1.5953 4.1760 3.9361 46 1 0.4467 -2.4733 -0.5548 47 1 2.0554 -2.9531 2.0944 48 1 0.5719 -3.8982 1.5404 49 1 1.8094 -4.6127 -0.5555 50 1 3.2932 -3.6677 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700018503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:52 Heat of formation + Delta-G solvation = -1.142295 kcal Electronic energy + Delta-G solvation = -30670.389457 eV Core-core repulsion = 26699.719284 eV Total energy + Delta-G solvation = -3970.670173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.61902 -39.80014 -37.92619 -36.32501 -35.39955 -35.18001 -32.81304 -31.89892 -29.85313 -28.89290 -27.20065 -26.64351 -25.49631 -24.22802 -23.38200 -22.61446 -21.92324 -20.59704 -19.89620 -18.95904 -18.03112 -17.67742 -17.21338 -16.86254 -16.34803 -15.54508 -15.30228 -14.97095 -14.76833 -14.41970 -14.31024 -14.18804 -13.84119 -13.57077 -13.23955 -13.04776 -12.84827 -12.73233 -12.50169 -12.40897 -11.97488 -11.91688 -11.82353 -11.73138 -11.52982 -11.02746 -10.98692 -10.80488 -10.80356 -10.69891 -10.64337 -10.35966 -10.25521 -9.93062 -9.91051 -9.85271 -9.69936 -9.56378 -8.69217 -8.58228 -8.09842 -6.83696 -5.72289 -3.04834 2.35843 2.71077 2.90347 3.38670 3.41886 3.45209 3.46618 3.69740 4.31149 4.49341 4.58341 4.64207 4.70219 4.84857 4.95944 5.02146 5.06201 5.17545 5.22775 5.24389 5.37577 5.40697 5.40834 5.49299 5.51418 5.53079 5.61510 5.68394 5.72302 5.76948 5.93006 5.93825 6.04119 6.12807 6.21034 6.21658 6.30620 6.34901 6.47861 6.66880 6.76570 6.94290 6.97097 7.20641 7.49184 7.57564 7.81545 7.81958 8.07082 8.22000 8.50748 9.19819 9.80025 10.47552 11.39277 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.003041 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.310289 B = 9206.072083 C = 9787.205974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.596 5.596 3 C 0.098 3.902 4 C 0.496 3.504 5 O -0.536 6.536 6 N -0.586 5.586 7 C 0.105 3.895 8 C -0.131 4.131 9 C -0.109 4.109 10 C -0.111 4.111 11 H 0.076 0.924 12 C 0.135 3.865 13 N -0.603 5.603 14 C -0.225 4.225 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.179 3.821 23 C 0.119 3.881 24 H 0.090 0.910 25 C 0.550 3.450 26 O -0.539 6.539 27 C -0.193 4.193 28 C -0.149 4.149 29 C -0.150 4.150 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.021 0.979 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.052 0.948 45 H 0.042 0.958 46 H 0.124 0.876 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -14.466 -12.662 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.328 5.328 3 C -0.029 4.029 4 C 0.282 3.718 5 O -0.413 6.413 6 N -0.318 5.318 7 C -0.018 4.018 8 C -0.169 4.169 9 C -0.147 4.147 10 C -0.131 4.131 11 H 0.094 0.906 12 C 0.009 3.991 13 N -0.331 5.331 14 C -0.353 4.353 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.053 3.947 23 C 0.014 3.986 24 H 0.108 0.892 25 C 0.339 3.661 26 O -0.416 6.416 27 C -0.214 4.214 28 C -0.186 4.186 29 C -0.187 4.187 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.142 0.858 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.622 -14.660 -12.168 19.121 hybrid contribution -0.504 1.183 0.323 1.326 sum 1.118 -13.477 -11.845 17.977 Atomic orbital electron populations 1.21832 0.78639 1.04198 1.01437 1.47292 1.07273 1.04782 1.73433 1.21385 0.99793 0.86457 0.95261 1.20997 0.78192 0.80896 0.91714 1.90669 1.50898 1.53745 1.45999 1.47481 1.55528 1.21577 1.07256 1.21852 0.95471 0.96225 0.88260 1.21865 0.95517 1.00955 0.98570 1.21428 1.01030 0.99465 0.92730 1.22653 0.95758 0.97645 0.97023 0.90569 1.21955 0.89760 0.93660 0.93741 1.44686 1.11220 1.21585 1.55587 1.19059 1.02643 0.94342 1.19280 0.90361 1.24805 0.96870 0.98587 1.00152 1.69982 1.09334 1.36230 1.41164 0.86128 0.77347 0.84428 0.78059 1.21696 1.21847 1.20671 1.21214 0.91469 0.87312 0.94675 1.21915 0.95459 0.99781 0.81418 0.89214 1.19661 0.87230 0.84319 0.74916 1.90679 1.13946 1.87195 1.49805 1.22157 1.02520 0.90573 1.06112 1.22942 1.03178 1.00980 0.91542 1.22957 1.00081 0.95135 1.00541 0.92395 0.90565 0.90586 0.87074 0.87443 0.90475 0.90336 0.91930 0.91062 0.92577 0.89970 0.96146 0.93634 0.93859 0.92991 0.94034 0.85821 0.88014 0.87760 0.87984 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.01 59.85 0.60 1.36 16 2 N -0.60 -7.55 2.36 -182.95 -0.43 -7.99 16 3 C 0.10 1.26 4.20 -5.19 -0.02 1.24 16 4 C 0.50 8.64 7.73 -10.99 -0.08 8.55 16 5 O -0.54 -11.36 15.75 5.55 0.09 -11.27 16 6 N -0.59 -10.12 2.71 -165.18 -0.45 -10.57 16 7 C 0.10 1.45 6.07 -3.64 -0.02 1.42 16 8 C -0.13 -1.73 6.11 -26.62 -0.16 -1.89 16 9 C -0.11 -1.75 4.82 -26.88 -0.13 -1.88 16 10 C -0.11 -2.00 3.73 -88.37 -0.33 -2.33 16 11 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 12 C 0.14 2.81 6.58 -1.57 -0.01 2.80 16 13 N -0.60 -15.28 3.02 -169.06 -0.51 -15.79 16 14 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 15 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 17 N -0.92 -26.77 10.38 55.49 0.58 -26.19 16 18 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.18 4.38 4.57 -3.35 -0.02 4.36 16 23 C 0.12 2.40 2.93 -67.44 -0.20 2.20 16 24 H 0.09 2.01 6.95 -51.93 -0.36 1.65 16 25 C 0.55 7.65 7.46 -10.98 -0.08 7.57 16 26 O -0.54 -9.38 15.84 5.56 0.09 -9.29 16 27 C -0.19 -1.95 4.80 -91.77 -0.44 -2.39 16 28 C -0.15 -1.42 10.23 -26.73 -0.27 -1.70 16 29 C -0.15 -1.37 10.04 -26.73 -0.27 -1.63 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.08 0.64 6.64 -51.93 -0.34 0.29 16 33 H 0.11 1.39 6.90 -51.93 -0.36 1.04 16 34 H 0.11 1.07 7.86 -51.93 -0.41 0.66 16 35 H 0.08 0.80 5.82 -51.93 -0.30 0.50 16 36 H 0.08 1.18 7.52 -51.93 -0.39 0.79 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.58 7.26 -51.93 -0.38 1.21 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.90 7.99 -51.93 -0.41 0.49 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 44 H 0.05 1.36 6.41 -51.93 -0.33 1.03 16 45 H 0.04 1.18 7.62 -51.93 -0.40 0.79 16 46 H 0.12 0.91 7.26 -51.93 -0.38 0.53 16 47 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.11 1.16 7.67 -51.93 -0.40 0.76 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -35.23 389.36 -9.72 -44.94 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.23 Total: 2.32 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -1.69 Total: 11.02 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.82 Total: -60.54 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.18 Total: -20.56 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.23 -9.72 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700018503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.801 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds