Wall clock time and date at job start Tue Mar 31 2020 18:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00342 * 2 1 4 4 C 1.50705 * 109.47156 * 293.95667 * 3 2 1 5 5 O 1.21294 * 119.99671 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00057 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99786 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00193 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99738 * 180.27320 * 7 6 4 10 10 N 1.31409 * 119.99741 * 179.72696 * 9 7 6 11 11 Si 1.86799 * 120.00196 * 359.72710 * 9 7 6 12 12 H 1.48494 * 109.47193 * 89.99635 * 11 9 7 13 13 H 1.48500 * 109.47273 * 210.00164 * 11 9 7 14 14 H 1.48499 * 109.46886 * 329.99849 * 11 9 7 15 15 C 1.46896 * 111.00025 * 123.95578 * 2 1 3 16 16 C 1.53001 * 109.47545 * 72.27523 * 15 2 1 17 17 H 1.09006 * 109.87392 * 304.58169 * 16 15 2 18 18 C 1.54323 * 109.87734 * 65.59034 * 16 15 2 19 19 C 1.55408 * 102.82494 * 141.52056 * 18 16 15 20 20 C 1.54907 * 101.66631 * 324.66182 * 19 18 16 21 21 N 1.47023 * 109.88580 * 183.56237 * 16 15 2 22 22 C 1.34773 * 125.64915 * 61.60624 * 21 16 15 23 23 O 1.21283 * 119.99796 * 354.74890 * 22 21 16 24 24 C 1.50700 * 120.00158 * 174.74195 * 22 21 16 25 25 H 1.08998 * 115.55043 * 325.67404 * 24 22 21 26 26 C 1.52997 * 117.49530 * 111.37922 * 24 22 21 27 27 C 1.52993 * 117.49887 * 180.02562 * 24 22 21 28 28 C 1.52993 * 138.58846 * 121.62096 * 27 24 22 29 29 C 1.52993 * 138.59176 * 23.40080 * 27 24 22 30 30 H 1.09006 * 109.46891 * 65.87663 * 1 2 3 31 31 H 1.08994 * 109.47334 * 185.87765 * 1 2 3 32 32 H 1.09002 * 109.47188 * 305.88231 * 1 2 3 33 33 H 1.09000 * 109.47837 * 173.95420 * 3 2 1 34 34 H 1.09002 * 109.47088 * 53.94918 * 3 2 1 35 35 H 0.96992 * 120.00075 * 359.97438 * 6 4 3 36 36 H 0.97000 * 119.99749 * 180.02562 * 10 9 7 37 37 H 1.08992 * 109.47339 * 192.28119 * 15 2 1 38 38 H 1.09006 * 109.47001 * 312.27721 * 15 2 1 39 39 H 1.08999 * 110.72434 * 259.97352 * 18 16 15 40 40 H 1.09000 * 110.72378 * 23.25173 * 18 16 15 41 41 H 1.08998 * 111.03764 * 206.52455 * 19 18 16 42 42 H 1.09003 * 110.92072 * 82.74920 * 19 18 16 43 43 H 1.08997 * 110.36850 * 278.08620 * 20 19 18 44 44 H 1.08998 * 110.45724 * 155.80725 * 20 19 18 45 45 H 1.09006 * 117.49920 * 214.97800 * 26 24 22 46 46 H 1.08997 * 117.50428 * 0.02562 * 26 24 22 47 47 H 1.08995 * 117.49642 * 336.59148 * 28 27 24 48 48 H 1.09004 * 117.49521 * 121.61673 * 28 27 24 49 49 H 1.08989 * 117.50303 * 238.38563 * 29 27 24 50 50 H 1.09004 * 117.49227 * 23.41066 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0054 1.4452 -2.1411 6 7 2.0190 3.3198 -1.5237 7 6 1.6933 3.9344 -2.7052 8 1 1.1302 3.3988 -3.4552 9 6 2.0920 5.2446 -2.9398 10 7 1.7844 5.8318 -4.0744 11 14 3.0653 6.1712 -1.6423 12 1 4.5174 5.9523 -1.8626 13 1 2.7631 7.6220 -1.7390 14 1 2.6890 5.6761 -0.2938 15 6 1.9955 -0.7660 1.1375 16 6 1.7683 -2.2596 0.8956 17 1 0.7110 -2.4482 0.7091 18 6 2.6061 -2.7289 -0.3124 19 6 3.0912 -4.1373 0.1305 20 6 3.3043 -3.9314 1.6510 21 7 2.2146 -3.0293 2.0660 22 6 1.7115 -2.9266 3.3121 23 8 0.8788 -2.0810 3.5621 24 6 2.1835 -3.8626 4.3948 25 1 2.4249 -4.8744 4.0693 26 6 3.0199 -3.2664 5.5288 27 6 1.5739 -3.6957 5.7881 28 6 0.7885 -4.5273 6.8041 29 6 0.3044 -3.1264 6.4245 30 1 -0.3633 0.4200 -0.9380 31 1 -0.3633 -1.0222 0.1052 32 1 -0.3634 0.6023 0.8326 33 1 3.0798 1.3444 0.1082 34 1 1.5611 1.9273 0.8309 35 1 2.5244 3.8010 -0.8500 36 1 2.0631 6.7464 -4.2383 37 1 3.0630 -0.5732 1.2425 38 1 1.4802 -0.4631 2.0491 39 1 1.9882 -2.7952 -1.2079 40 1 3.4537 -2.0633 -0.4758 41 1 4.0264 -4.4021 -0.3628 42 1 2.3256 -4.8899 -0.0584 43 1 4.2728 -3.4680 1.8390 44 1 3.2308 -4.8826 2.1782 45 1 3.8119 -3.8860 5.9495 46 1 3.2284 -2.1972 5.4920 47 1 0.2187 -5.3762 6.4264 48 1 1.2263 -4.6575 7.7938 49 1 0.4236 -2.3351 7.1644 50 1 -0.5840 -3.0538 5.7971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700359151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:54 Heat of formation + Delta-G solvation = 12.620280 kcal Electronic energy + Delta-G solvation = -29241.655376 eV Core-core repulsion = 25271.581993 eV Total energy + Delta-G solvation = -3970.073383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62108 -38.94837 -38.38302 -37.08064 -36.11121 -33.86269 -33.07614 -31.64396 -31.60624 -30.45756 -27.89371 -26.23933 -25.19533 -24.39783 -22.72012 -22.68898 -21.90875 -20.90521 -19.73204 -19.30526 -18.65785 -18.17739 -17.51194 -16.70503 -15.91245 -15.50379 -15.32235 -15.27140 -15.22732 -14.88071 -14.54349 -14.36394 -14.12247 -13.70939 -13.45875 -13.24199 -13.17053 -12.94633 -12.65715 -12.37703 -12.34827 -12.06196 -11.90357 -11.79720 -11.65635 -11.41660 -11.32118 -11.29381 -10.98607 -10.86627 -10.72453 -10.56728 -10.56073 -10.45558 -10.33618 -9.94542 -9.85866 -9.50494 -8.89372 -8.46925 -8.14141 -7.85328 -6.27835 -3.78772 2.26640 2.59692 3.05681 3.09340 3.17298 3.35116 3.42480 3.79128 3.90926 4.05647 4.13512 4.23238 4.36452 4.41816 4.58016 4.66937 4.80154 4.86291 4.94415 5.06515 5.15888 5.18192 5.24703 5.25003 5.28035 5.30951 5.32482 5.37865 5.52326 5.55618 5.58532 5.63198 5.67641 5.74289 5.80651 5.84635 5.86209 5.91272 5.95781 6.00377 6.07153 6.19232 6.30764 6.60857 7.21607 7.33042 7.38822 7.62737 8.01605 8.18580 8.64470 8.99175 9.46557 9.88425 10.85398 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.002361 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.543864 B =11855.994643 C =12622.737585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.513 5.513 3 C 0.045 3.955 4 C 0.456 3.544 5 O -0.558 6.558 6 N -0.593 5.593 7 C -0.302 4.302 8 H 0.120 0.880 9 C 0.040 3.960 10 N -0.883 5.883 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.044 3.956 16 C 0.144 3.856 17 H 0.077 0.923 18 C -0.111 4.111 19 C -0.138 4.138 20 C 0.101 3.899 21 N -0.613 5.613 22 C 0.554 3.446 23 O -0.528 6.528 24 C -0.138 4.138 25 H 0.122 0.878 26 C -0.100 4.100 27 C -0.202 4.202 28 C -0.130 4.130 29 C -0.113 4.113 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -22.793 20.460 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.238 5.238 3 C -0.087 4.087 4 C 0.241 3.759 5 O -0.440 6.440 6 N -0.233 5.233 7 C -0.431 4.431 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.523 5.523 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.086 4.086 16 C 0.041 3.959 17 H 0.095 0.905 18 C -0.149 4.149 19 C -0.176 4.176 20 C -0.022 4.022 21 N -0.348 5.348 22 C 0.343 3.657 23 O -0.404 6.404 24 C -0.159 4.159 25 H 0.140 0.860 26 C -0.137 4.137 27 C -0.203 4.203 28 C -0.166 4.166 29 C -0.150 4.150 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.202 0.798 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.628 -22.769 19.519 30.345 hybrid contribution 0.663 1.281 1.600 2.154 sum 5.291 -21.488 21.118 30.589 Atomic orbital electron populations 1.22575 0.86571 1.00774 1.02604 1.61508 1.08814 1.12355 1.41079 1.21913 1.00583 0.89321 0.96885 1.19635 0.84936 0.82400 0.88897 1.90514 1.42540 1.64122 1.46806 1.42214 1.51199 1.11997 1.17870 1.19421 1.33587 0.96406 0.93683 0.86271 1.25032 0.97955 0.96533 0.96721 1.69622 1.45840 1.13744 1.23098 0.86679 0.80881 0.80474 0.81414 1.19643 1.20229 1.19541 1.22458 1.00130 0.92993 0.92983 1.21551 0.99321 0.90758 0.84291 0.90499 1.22606 1.00312 0.95000 0.97017 1.22888 1.02323 0.98281 0.94113 1.22346 0.90382 0.93607 0.95867 1.48531 1.37092 1.40975 1.08181 1.19338 0.81204 0.83914 0.81256 1.90713 1.33001 1.35907 1.80788 1.21941 1.05619 1.00075 0.88219 0.85989 1.22665 0.91789 1.01618 0.97635 1.21173 0.94919 1.08736 0.95467 1.22767 1.01060 0.95284 0.97518 1.22604 0.95372 0.95923 1.01054 0.88529 0.92378 0.96454 0.89471 0.93435 0.79773 0.91680 0.91240 0.93212 0.89355 0.90006 0.89735 0.90747 0.91164 0.90745 0.87577 0.88058 0.88555 0.88313 0.88486 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.06 60.07 0.54 0.93 16 2 N -0.51 -8.65 4.21 -244.37 -1.03 -9.68 16 3 C 0.04 0.80 5.44 -4.98 -0.03 0.77 16 4 C 0.46 10.56 7.54 -10.98 -0.08 10.47 16 5 O -0.56 -14.94 13.88 5.55 0.08 -14.86 16 6 N -0.59 -14.41 5.09 -10.96 -0.06 -14.47 16 7 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 11 Si 0.88 19.71 27.73 -169.99 -4.71 14.99 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 15 C 0.04 0.62 4.35 -3.83 -0.02 0.60 16 16 C 0.14 1.76 2.94 -66.95 -0.20 1.57 16 17 H 0.08 1.06 6.51 -51.93 -0.34 0.72 16 18 C -0.11 -1.16 6.27 -24.76 -0.16 -1.32 16 19 C -0.14 -1.00 7.09 -24.45 -0.17 -1.17 16 20 C 0.10 0.72 6.75 -2.53 -0.02 0.71 16 21 N -0.61 -6.53 3.07 -163.02 -0.50 -7.03 16 22 C 0.55 6.68 7.45 -10.99 -0.08 6.60 16 23 O -0.53 -8.36 15.04 5.56 0.08 -8.27 16 24 C -0.14 -1.21 5.49 -91.78 -0.50 -1.72 16 25 H 0.12 0.81 7.11 -51.93 -0.37 0.45 16 26 C -0.10 -0.76 10.24 -26.71 -0.27 -1.03 16 27 C -0.20 -1.81 5.06 -154.50 -0.78 -2.59 16 28 C -0.13 -0.90 10.53 -26.73 -0.28 -1.18 16 29 C -0.11 -1.02 10.16 -26.73 -0.27 -1.29 16 30 H 0.10 1.96 6.01 -51.93 -0.31 1.64 16 31 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 32 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 33 H 0.09 1.35 7.86 -51.93 -0.41 0.95 16 34 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 35 H 0.37 7.96 5.77 -40.82 -0.24 7.72 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.93 7.72 -51.93 -0.40 0.52 16 38 H 0.05 0.80 6.49 -51.93 -0.34 0.47 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.39 6.95 -51.93 -0.36 0.03 16 45 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.80 8.14 -51.94 -0.42 0.38 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -34.48 399.56 -10.03 -44.51 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.12 Total: 10.48 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.57 Total: 3.58 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.81 Total: -56.45 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.16 Total: -23.14 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 14.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.48 -10.03 -44.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.131 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds