Wall clock time and date at job start Tue Mar 31 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00342 * 2 1 4 4 C 1.50705 * 109.47156 * 293.95667 * 3 2 1 5 5 O 1.21294 * 119.99671 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00057 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99786 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00193 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99738 * 180.27320 * 7 6 4 10 10 N 1.31409 * 119.99741 * 179.72696 * 9 7 6 11 11 Si 1.86799 * 120.00196 * 359.72710 * 9 7 6 12 12 H 1.48494 * 109.47193 * 89.99635 * 11 9 7 13 13 H 1.48500 * 109.47273 * 210.00164 * 11 9 7 14 14 H 1.48499 * 109.46886 * 329.99849 * 11 9 7 15 15 C 1.46896 * 111.00025 * 123.95578 * 2 1 3 16 16 C 1.53001 * 109.47545 * 72.27523 * 15 2 1 17 17 H 1.09006 * 109.87392 * 304.58169 * 16 15 2 18 18 C 1.54323 * 109.87734 * 65.59034 * 16 15 2 19 19 C 1.55408 * 102.82494 * 141.52056 * 18 16 15 20 20 C 1.54907 * 101.66631 * 324.66182 * 19 18 16 21 21 N 1.47023 * 109.88580 * 183.56237 * 16 15 2 22 22 C 1.34773 * 125.64915 * 61.60624 * 21 16 15 23 23 O 1.21283 * 119.99796 * 354.74890 * 22 21 16 24 24 C 1.50700 * 120.00158 * 174.74195 * 22 21 16 25 25 H 1.08998 * 115.55043 * 325.67404 * 24 22 21 26 26 C 1.52997 * 117.49530 * 111.37922 * 24 22 21 27 27 C 1.52993 * 117.49887 * 180.02562 * 24 22 21 28 28 C 1.52993 * 138.58846 * 121.62096 * 27 24 22 29 29 C 1.52993 * 138.59176 * 23.40080 * 27 24 22 30 30 H 1.09006 * 109.46891 * 65.87663 * 1 2 3 31 31 H 1.08994 * 109.47334 * 185.87765 * 1 2 3 32 32 H 1.09002 * 109.47188 * 305.88231 * 1 2 3 33 33 H 1.09000 * 109.47837 * 173.95420 * 3 2 1 34 34 H 1.09002 * 109.47088 * 53.94918 * 3 2 1 35 35 H 0.96992 * 120.00075 * 359.97438 * 6 4 3 36 36 H 0.97000 * 119.99749 * 180.02562 * 10 9 7 37 37 H 1.08992 * 109.47339 * 192.28119 * 15 2 1 38 38 H 1.09006 * 109.47001 * 312.27721 * 15 2 1 39 39 H 1.08999 * 110.72434 * 259.97352 * 18 16 15 40 40 H 1.09000 * 110.72378 * 23.25173 * 18 16 15 41 41 H 1.08998 * 111.03764 * 206.52455 * 19 18 16 42 42 H 1.09003 * 110.92072 * 82.74920 * 19 18 16 43 43 H 1.08997 * 110.36850 * 278.08620 * 20 19 18 44 44 H 1.08998 * 110.45724 * 155.80725 * 20 19 18 45 45 H 1.09006 * 117.49920 * 214.97800 * 26 24 22 46 46 H 1.08997 * 117.50428 * 0.02562 * 26 24 22 47 47 H 1.08995 * 117.49642 * 336.59148 * 28 27 24 48 48 H 1.09004 * 117.49521 * 121.61673 * 28 27 24 49 49 H 1.08989 * 117.50303 * 238.38563 * 29 27 24 50 50 H 1.09004 * 117.49227 * 23.41066 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0054 1.4452 -2.1411 6 7 2.0190 3.3198 -1.5237 7 6 1.6933 3.9344 -2.7052 8 1 1.1302 3.3988 -3.4552 9 6 2.0920 5.2446 -2.9398 10 7 1.7844 5.8318 -4.0744 11 14 3.0653 6.1712 -1.6423 12 1 4.5174 5.9523 -1.8626 13 1 2.7631 7.6220 -1.7390 14 1 2.6890 5.6761 -0.2938 15 6 1.9955 -0.7660 1.1375 16 6 1.7683 -2.2596 0.8956 17 1 0.7110 -2.4482 0.7091 18 6 2.6061 -2.7289 -0.3124 19 6 3.0912 -4.1373 0.1305 20 6 3.3043 -3.9314 1.6510 21 7 2.2146 -3.0293 2.0660 22 6 1.7115 -2.9266 3.3121 23 8 0.8788 -2.0810 3.5621 24 6 2.1835 -3.8626 4.3948 25 1 2.4249 -4.8744 4.0693 26 6 3.0199 -3.2664 5.5288 27 6 1.5739 -3.6957 5.7881 28 6 0.7885 -4.5273 6.8041 29 6 0.3044 -3.1264 6.4245 30 1 -0.3633 0.4200 -0.9380 31 1 -0.3633 -1.0222 0.1052 32 1 -0.3634 0.6023 0.8326 33 1 3.0798 1.3444 0.1082 34 1 1.5611 1.9273 0.8309 35 1 2.5244 3.8010 -0.8500 36 1 2.0631 6.7464 -4.2383 37 1 3.0630 -0.5732 1.2425 38 1 1.4802 -0.4631 2.0491 39 1 1.9882 -2.7952 -1.2079 40 1 3.4537 -2.0633 -0.4758 41 1 4.0264 -4.4021 -0.3628 42 1 2.3256 -4.8899 -0.0584 43 1 4.2728 -3.4680 1.8390 44 1 3.2308 -4.8826 2.1782 45 1 3.8119 -3.8860 5.9495 46 1 3.2284 -2.1972 5.4920 47 1 0.2187 -5.3762 6.4264 48 1 1.2263 -4.6575 7.7938 49 1 0.4236 -2.3351 7.1644 50 1 -0.5840 -3.0538 5.7971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700359151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:53 Heat of formation + Delta-G solvation = -11.382143 kcal Electronic energy + Delta-G solvation = -29242.696200 eV Core-core repulsion = 25271.581993 eV Total energy + Delta-G solvation = -3971.114206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48791 -40.49458 -39.41744 -38.00100 -37.43399 -35.90467 -33.78022 -33.73993 -32.37990 -31.48945 -29.44594 -27.49143 -26.37878 -25.80007 -23.66390 -23.30158 -22.91685 -21.73786 -21.27609 -20.52780 -20.18177 -19.38546 -18.35533 -17.96492 -17.22054 -16.87724 -16.64092 -16.34337 -16.09810 -15.91129 -15.76597 -15.54543 -15.28881 -15.15091 -14.87551 -14.44877 -14.34231 -14.10843 -14.06559 -13.71048 -13.44448 -13.14530 -13.12894 -12.80160 -12.70872 -12.63292 -12.45227 -12.40579 -12.37272 -12.05788 -11.99679 -11.81310 -11.56841 -11.48746 -11.18610 -11.08047 -10.94142 -10.73561 -10.42551 -10.24297 -9.69717 -9.27950 -8.41675 -6.02007 1.29301 1.33929 1.42712 1.43495 1.77999 1.93866 2.21880 2.59279 2.72679 2.82721 3.13124 3.22261 3.31669 3.50792 3.67597 3.77350 3.86734 3.90475 4.05633 4.06641 4.22591 4.24819 4.30383 4.35312 4.39950 4.47107 4.51727 4.55566 4.59245 4.65524 4.72099 4.74703 4.76893 4.79537 4.86862 4.99611 5.00930 5.02834 5.08429 5.11249 5.18699 5.25088 5.35821 5.43499 5.52235 5.83946 5.95630 6.05982 6.53144 6.59151 6.87827 7.14518 7.38859 7.95708 8.75877 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.002361 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.543864 B =11855.994643 C =12622.737585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.522 5.522 3 C 0.054 3.946 4 C 0.455 3.545 5 O -0.601 6.601 6 N -0.593 5.593 7 C -0.325 4.325 8 H 0.057 0.943 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.963 3.037 12 H -0.254 1.254 13 H -0.275 1.275 14 H -0.236 1.236 15 C 0.054 3.946 16 C 0.144 3.856 17 H 0.054 0.946 18 C -0.111 4.111 19 C -0.127 4.127 20 C 0.098 3.902 21 N -0.611 5.611 22 C 0.545 3.455 23 O -0.578 6.578 24 C -0.138 4.138 25 H 0.151 0.849 26 C -0.084 4.084 27 C -0.228 4.228 28 C -0.103 4.103 29 C -0.138 4.138 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.279 0.721 37 H 0.085 0.915 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.098 0.902 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -24.511 23.866 35.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.247 5.247 3 C -0.077 4.077 4 C 0.243 3.757 5 O -0.484 6.484 6 N -0.235 5.235 7 C -0.454 4.454 8 H 0.075 0.925 9 C -0.214 4.214 10 N -0.574 5.574 11 Si 0.784 3.216 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.160 1.160 15 C -0.074 4.074 16 C 0.040 3.960 17 H 0.072 0.928 18 C -0.149 4.149 19 C -0.165 4.165 20 C -0.023 4.023 21 N -0.344 5.344 22 C 0.335 3.665 23 O -0.457 6.457 24 C -0.159 4.159 25 H 0.168 0.832 26 C -0.121 4.121 27 C -0.228 4.228 28 C -0.140 4.140 29 C -0.175 4.175 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.156 0.844 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.137 0.863 49 H 0.116 0.884 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.012 -24.535 22.934 34.527 hybrid contribution -0.491 1.747 0.433 1.865 sum 7.522 -22.788 23.366 33.494 Atomic orbital electron populations 1.22385 0.87359 1.01286 1.00601 1.61471 1.08274 1.12201 1.42740 1.21864 1.02738 0.89472 0.93625 1.20704 0.83020 0.81834 0.90175 1.90508 1.43962 1.65082 1.48898 1.42033 1.51901 1.12530 1.17003 1.18993 1.34640 0.97194 0.94593 0.92469 1.26087 0.98708 0.96984 0.99608 1.69799 1.47209 1.14530 1.25890 0.85383 0.79206 0.78178 0.78879 1.17868 1.19986 1.16001 1.22419 1.00407 0.93762 0.90827 1.21424 0.98611 0.89954 0.86018 0.92827 1.22537 0.99543 0.97303 0.95507 1.22884 1.03376 0.95950 0.94273 1.22629 0.89657 0.94257 0.95796 1.48624 1.37557 1.40897 1.07321 1.20024 0.80515 0.83804 0.82111 1.90691 1.35229 1.38100 1.81715 1.21995 1.06206 1.00520 0.87177 0.83202 1.22760 0.91747 1.01390 0.96199 1.21455 0.95570 1.09664 0.96124 1.22840 0.99414 0.93863 0.97842 1.22568 0.95218 0.98024 1.01653 0.91954 0.91132 0.96413 0.86019 0.91533 0.77654 0.91155 0.89649 0.95107 0.90961 0.90352 0.87455 0.90411 0.89635 0.87972 0.84398 0.89411 0.87801 0.86266 0.88395 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 9.06 127.69 1.16 2.30 16 2 N -0.52 -17.52 4.21 -927.05 -3.91 -21.43 16 3 C 0.05 1.86 5.44 85.56 0.47 2.32 16 4 C 0.46 21.37 7.54 87.66 0.66 22.03 16 5 O -0.60 -33.78 13.88 -3.07 -0.04 -33.82 16 6 N -0.59 -28.86 5.09 -306.97 -1.56 -30.42 16 7 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 8 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 9 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 10 N -0.93 -56.93 13.96 21.66 0.30 -56.63 16 11 Si 0.96 39.71 27.73 68.60 1.90 41.61 16 12 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 14 H -0.24 -8.40 6.52 99.48 0.65 -7.75 16 15 C 0.05 1.50 4.35 86.30 0.38 1.88 16 16 C 0.14 3.44 2.94 45.34 0.13 3.58 16 17 H 0.05 1.52 6.51 -2.38 -0.02 1.51 16 18 C -0.11 -2.18 6.27 31.87 0.20 -1.98 16 19 C -0.13 -1.45 7.09 32.07 0.23 -1.23 16 20 C 0.10 1.04 6.75 86.85 0.59 1.63 16 21 N -0.61 -11.91 3.07 -788.05 -2.42 -14.33 16 22 C 0.55 12.56 7.45 87.66 0.65 13.22 16 23 O -0.58 -18.66 15.04 -3.04 -0.05 -18.70 16 24 C -0.14 -2.08 5.49 -11.54 -0.06 -2.15 16 25 H 0.15 1.36 7.11 -2.39 -0.02 1.34 16 26 C -0.08 -1.03 10.24 30.61 0.31 -0.72 16 27 C -0.23 -3.65 5.06 -52.17 -0.26 -3.91 16 28 C -0.10 -1.20 10.53 30.59 0.32 -0.88 16 29 C -0.14 -2.49 10.16 30.59 0.31 -2.18 16 30 H 0.06 2.68 6.01 -2.38 -0.01 2.67 16 31 H 0.07 2.30 6.37 -2.39 -0.02 2.29 16 32 H 0.02 0.62 8.06 -2.39 -0.02 0.60 16 33 H 0.12 3.38 7.86 -2.39 -0.02 3.36 16 34 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 35 H 0.39 15.83 5.77 -92.71 -0.53 15.30 16 36 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.09 2.07 7.72 -2.39 -0.02 2.05 16 38 H 0.03 0.99 6.49 -2.38 -0.02 0.97 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 0.58 6.95 -2.39 -0.02 0.57 16 45 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -82.72 399.56 0.98 -81.74 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: 0.35 Total: 36.98 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.40 Total: 15.01 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -7.58 Total: -122.81 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.09 Total: -52.53 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.90 Total: 41.61 kcal Total: -82.72 0.98 -81.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.357 kcal (2) G-P(sol) polarization free energy of solvation -82.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds