Wall clock time and date at job start Tue Mar 31 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00223 * 2 1 4 4 C 1.50693 * 109.47301 * 66.04720 * 3 2 1 5 5 O 1.21294 * 120.00156 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00194 * 180.02562 * 4 3 2 7 7 C 1.37098 * 120.00372 * 179.97438 * 6 4 3 8 8 H 1.08005 * 120.00065 * 359.97438 * 7 6 4 9 9 C 1.38952 * 120.00237 * 180.02562 * 7 6 4 10 10 N 1.31413 * 119.99912 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99862 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47203 * 90.00239 * 11 9 7 13 13 H 1.48506 * 109.46867 * 209.99929 * 11 9 7 14 14 H 1.48502 * 109.47176 * 329.99866 * 11 9 7 15 15 C 1.46894 * 111.00114 * 236.04212 * 2 1 3 16 16 C 1.53005 * 109.47549 * 284.16364 * 15 2 1 17 17 H 1.09005 * 109.87185 * 57.31042 * 16 15 2 18 18 C 1.54323 * 109.88091 * 296.30209 * 16 15 2 19 19 C 1.55152 * 102.94089 * 218.38873 * 18 16 15 20 20 C 1.54910 * 101.58576 * 35.49872 * 19 18 16 21 21 N 1.47019 * 109.88681 * 178.48906 * 16 15 2 22 22 C 1.34775 * 125.64717 * 298.34085 * 21 16 15 23 23 O 1.21274 * 120.00118 * 354.91940 * 22 21 16 24 24 C 1.50708 * 119.99757 * 174.92461 * 22 21 16 25 25 H 1.08998 * 115.54518 * 34.32819 * 24 22 21 26 26 C 1.52996 * 117.49778 * 248.61979 * 24 22 21 27 27 C 1.52994 * 117.49724 * 179.97438 * 24 22 21 28 28 C 1.52994 * 138.58744 * 336.59897 * 27 24 22 29 29 C 1.52995 * 138.58781 * 238.37849 * 27 24 22 30 30 H 1.08995 * 109.47364 * 179.32042 * 1 2 3 31 31 H 1.08995 * 109.46791 * 59.31283 * 1 2 3 32 32 H 1.09000 * 109.46916 * 299.31786 * 1 2 3 33 33 H 1.09003 * 109.47260 * 186.04594 * 3 2 1 34 34 H 1.09004 * 109.47148 * 306.04368 * 3 2 1 35 35 H 0.96997 * 120.00035 * 0.02562 * 6 4 3 36 36 H 0.97001 * 119.99707 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.46934 * 44.16100 * 15 2 1 38 38 H 1.09002 * 109.47475 * 164.15827 * 15 2 1 39 39 H 1.09000 * 110.72069 * 336.75063 * 18 16 15 40 40 H 1.09000 * 110.72197 * 99.84026 * 18 16 15 41 41 H 1.09000 * 111.00668 * 153.57658 * 19 18 16 42 42 H 1.09002 * 111.00505 * 277.42367 * 19 18 16 43 43 H 1.09004 * 110.36556 * 81.83032 * 20 19 18 44 44 H 1.08994 * 110.36837 * 204.15529 * 20 19 18 45 45 H 1.09004 * 117.50088 * 359.97438 * 26 24 22 46 46 H 1.08995 * 117.50184 * 145.02739 * 26 24 22 47 47 H 1.08996 * 117.50198 * 336.59347 * 28 27 24 48 48 H 1.08998 * 117.49476 * 121.61985 * 28 27 24 49 49 H 1.08993 * 117.49611 * 238.38494 * 29 27 24 50 50 H 1.08996 * 117.49572 * 23.38789 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0047 1.4456 2.1408 6 7 2.0182 3.3202 1.5232 7 6 1.6916 3.9351 2.7043 8 1 1.1286 3.3995 3.4544 9 6 2.0841 5.2478 2.9358 10 7 1.7707 5.8373 4.0677 11 14 3.0561 6.1748 1.6377 12 1 2.1186 6.8780 0.7257 13 1 3.9424 7.1670 2.2976 14 1 3.8800 5.2165 0.8579 15 6 1.9954 -0.7660 -1.1375 16 6 1.8487 -2.2628 -0.8561 17 1 0.8030 -2.5029 -0.6639 18 6 2.7098 -2.6545 0.3631 19 6 3.2689 -4.0449 -0.0386 20 6 3.4756 -3.8684 -1.5636 21 7 2.3400 -3.0380 -2.0047 22 6 1.8356 -2.9967 -3.2538 23 8 0.8389 -2.3452 -3.4840 24 6 2.5100 -3.7603 -4.3644 25 1 2.9659 -4.7069 -4.0745 26 6 3.2026 -2.9483 -5.4606 27 6 1.8886 -3.6737 -5.7598 28 6 0.5295 -3.3714 -6.3938 29 6 1.3130 -4.6147 -6.8199 30 1 -0.3634 -1.0275 -0.0122 31 1 -0.3633 0.5245 -0.8837 32 1 -0.3633 0.5032 0.8960 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8310 35 1 2.5229 3.8016 0.8492 36 1 2.0450 6.7536 4.2295 37 1 1.4374 -0.5092 -2.0379 38 1 3.0486 -0.5249 -1.2817 39 1 3.5203 -1.9403 0.5083 40 1 2.0964 -2.7271 1.2612 41 1 4.2155 -4.2454 0.4634 42 1 2.5442 -4.8323 0.1689 43 1 4.4182 -3.3583 -1.7622 44 1 3.4544 -4.8365 -2.0639 45 1 3.1702 -1.8618 -5.3788 46 1 4.1145 -3.3606 -5.8923 47 1 -0.3576 -3.5219 -5.7786 48 1 0.4768 -2.5431 -7.1004 49 1 1.7758 -4.6042 -7.8067 50 1 0.9418 -5.5832 -6.4849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700359154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:02 Heat of formation + Delta-G solvation = -11.855961 kcal Electronic energy + Delta-G solvation = -29248.860281 eV Core-core repulsion = 25277.725528 eV Total energy + Delta-G solvation = -3971.134753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48223 -40.49849 -39.41974 -38.01014 -37.43153 -35.90133 -33.77441 -33.73698 -32.38960 -31.50029 -29.46210 -27.46554 -26.37355 -25.80666 -23.67527 -23.30050 -22.94748 -21.70417 -21.27162 -20.51309 -20.17824 -19.38122 -18.36559 -17.95595 -17.20411 -16.87280 -16.64811 -16.39495 -16.12288 -15.90998 -15.76475 -15.56664 -15.29915 -15.05893 -14.86691 -14.42922 -14.34780 -14.11128 -14.08596 -13.72718 -13.43731 -13.16404 -13.13786 -12.80521 -12.70924 -12.64161 -12.43631 -12.40011 -12.37349 -12.05151 -11.98654 -11.80981 -11.57380 -11.47939 -11.18453 -11.08859 -10.94304 -10.74157 -10.42291 -10.23817 -9.70988 -9.28784 -8.41249 -6.01660 1.29343 1.34550 1.42956 1.43532 1.77812 1.94397 2.22385 2.59016 2.73260 2.82605 3.14294 3.21482 3.31774 3.51819 3.67069 3.76801 3.86544 3.91555 4.05339 4.07333 4.21970 4.24698 4.30968 4.36138 4.39222 4.47000 4.51330 4.55794 4.59741 4.65495 4.71134 4.74244 4.76378 4.79454 4.85899 4.99237 5.00658 5.03075 5.08014 5.10952 5.18463 5.25277 5.35767 5.43751 5.52633 5.84105 5.95840 6.05512 6.53096 6.59543 6.88302 7.14335 7.39355 7.96293 8.76287 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.002367 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.670698 B =11826.744075 C =12548.591789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.523 5.523 3 C 0.054 3.946 4 C 0.455 3.545 5 O -0.601 6.601 6 N -0.592 5.592 7 C -0.325 4.325 8 H 0.057 0.943 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.963 3.037 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.231 1.231 15 C 0.057 3.943 16 C 0.145 3.855 17 H 0.051 0.949 18 C -0.110 4.110 19 C -0.127 4.127 20 C 0.098 3.902 21 N -0.611 5.611 22 C 0.546 3.454 23 O -0.579 6.579 24 C -0.138 4.138 25 H 0.151 0.849 26 C -0.085 4.085 27 C -0.228 4.228 28 C -0.138 4.138 29 C -0.103 4.103 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.388 0.612 36 H 0.279 0.721 37 H 0.027 0.973 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.138 0.862 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.119 0.881 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.088 -23.468 -23.788 34.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.247 5.247 3 C -0.077 4.077 4 C 0.242 3.758 5 O -0.485 6.485 6 N -0.234 5.234 7 C -0.454 4.454 8 H 0.075 0.925 9 C -0.214 4.214 10 N -0.575 5.575 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.154 1.154 15 C -0.072 4.072 16 C 0.041 3.959 17 H 0.069 0.931 18 C -0.148 4.148 19 C -0.165 4.165 20 C -0.023 4.023 21 N -0.344 5.344 22 C 0.336 3.664 23 O -0.459 6.459 24 C -0.159 4.159 25 H 0.168 0.832 26 C -0.122 4.122 27 C -0.228 4.228 28 C -0.175 4.175 29 C -0.139 4.139 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.224 0.776 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.156 0.844 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.137 0.863 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.268 -23.599 -22.844 34.127 hybrid contribution -0.585 1.655 -0.413 1.804 sum 8.683 -21.944 -23.257 33.133 Atomic orbital electron populations 1.22381 0.87322 1.01634 1.00307 1.61434 1.08289 1.12263 1.42704 1.21868 1.02745 0.89433 0.93657 1.20713 0.83022 0.81809 0.90212 1.90512 1.43947 1.65100 1.48933 1.42032 1.51829 1.12533 1.17048 1.18990 1.34620 0.96943 0.94841 0.92505 1.26093 0.98734 0.96974 0.99622 1.69803 1.47296 1.14298 1.26072 0.85387 0.78924 0.79107 0.78263 1.18492 1.19847 1.15440 1.22381 1.00468 0.93716 0.90617 1.21376 0.98304 0.89872 0.86377 0.93111 1.22470 0.99160 0.97718 0.95429 1.22845 1.03100 0.96147 0.94433 1.22632 0.88682 0.95621 0.95397 1.48625 1.34425 1.43523 1.07823 1.20018 0.83232 0.80777 0.82380 1.90692 1.27101 1.45050 1.83022 1.22003 1.04414 1.02449 0.87016 0.83168 1.22752 0.94736 0.98143 0.96524 1.21457 0.97174 1.08357 0.95857 1.22572 0.92751 1.00430 1.01699 1.22841 0.99812 0.94091 0.97170 0.91336 0.96223 0.91937 0.85958 0.91313 0.77625 0.91171 0.95446 0.89376 0.90257 0.91124 0.87390 0.90607 0.89345 0.88194 0.89495 0.84424 0.90411 0.88429 0.86300 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.03 127.69 1.15 2.29 16 2 N -0.52 -17.27 4.14 -927.08 -3.84 -21.11 16 3 C 0.05 1.81 5.43 85.56 0.46 2.27 16 4 C 0.45 21.11 7.51 87.65 0.66 21.77 16 5 O -0.60 -33.59 13.88 -3.07 -0.04 -33.63 16 6 N -0.59 -28.54 5.09 -306.98 -1.56 -30.10 16 7 C -0.32 -19.23 10.16 84.04 0.85 -18.38 16 8 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 9 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 10 N -0.93 -56.80 13.96 21.66 0.30 -56.50 16 11 Si 0.96 39.38 27.74 68.60 1.90 41.29 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 15 C 0.06 1.54 4.36 86.31 0.38 1.91 16 16 C 0.14 3.49 2.92 45.34 0.13 3.62 16 17 H 0.05 1.48 6.81 -2.38 -0.02 1.46 16 18 C -0.11 -2.19 6.20 31.78 0.20 -1.99 16 19 C -0.13 -1.51 7.08 31.98 0.23 -1.28 16 20 C 0.10 1.06 6.64 86.85 0.58 1.64 16 21 N -0.61 -12.00 3.06 -788.05 -2.42 -14.42 16 22 C 0.55 12.65 7.37 87.66 0.65 13.30 16 23 O -0.58 -18.84 15.45 -3.01 -0.05 -18.88 16 24 C -0.14 -2.10 5.57 -11.54 -0.06 -2.16 16 25 H 0.15 1.36 7.07 -2.39 -0.02 1.34 16 26 C -0.08 -1.07 10.24 30.61 0.31 -0.76 16 27 C -0.23 -3.67 5.06 -52.17 -0.26 -3.93 16 28 C -0.14 -2.48 10.16 30.60 0.31 -2.17 16 29 C -0.10 -1.19 10.53 30.60 0.32 -0.87 16 30 H 0.07 2.27 6.73 -2.39 -0.02 2.25 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 2.68 5.89 -2.39 -0.01 2.67 16 33 H 0.12 3.29 7.83 -2.39 -0.02 3.28 16 34 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 35 H 0.39 15.60 5.76 -92.71 -0.53 15.07 16 36 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.03 0.86 6.83 -2.39 -0.02 0.84 16 38 H 0.09 2.05 7.69 -2.39 -0.02 2.04 16 39 H 0.08 1.62 7.82 -2.39 -0.02 1.61 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.61 7.10 -2.39 -0.02 0.60 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -82.71 400.73 1.02 -81.69 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.35 Total: 36.84 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.37 Total: 14.84 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -7.51 Total: -122.13 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.90 Total: 41.29 kcal Total: -82.71 1.02 -81.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.833 kcal (2) G-P(sol) polarization free energy of solvation -82.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds