Wall clock time and date at job start Tue Mar 31 2020 18:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00164 * 2 1 4 4 O 1.21279 * 119.99524 * 5.34057 * 3 2 1 5 5 C 1.50694 * 120.00094 * 185.34459 * 3 2 1 6 6 C 1.54636 * 111.03829 * 269.05643 * 5 3 2 7 7 C 1.51099 * 104.72344 * 217.33428 * 6 5 3 8 8 C 1.30524 * 111.10537 * 16.43587 * 7 6 5 9 9 C 1.51096 * 111.10750 * 359.97438 * 8 7 6 10 10 C 1.46502 * 119.99944 * 179.97438 * 2 1 3 11 11 H 1.08991 * 109.47145 * 180.02562 * 10 2 1 12 12 C 1.52997 * 109.47047 * 300.00484 * 10 2 1 13 13 N 1.46902 * 109.47338 * 304.99706 * 12 10 2 14 14 C 1.46900 * 111.00346 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47261 * 180.02562 * 14 13 12 16 16 O 1.21299 * 120.00132 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00309 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99644 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99917 * 180.02562 * 18 17 15 21 21 N 1.31420 * 119.99854 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00300 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47334 * 89.99943 * 22 20 18 24 24 H 1.48497 * 109.47262 * 210.00329 * 22 20 18 25 25 H 1.48501 * 109.47153 * 330.00133 * 22 20 18 26 26 C 1.52997 * 109.47180 * 59.99973 * 10 2 1 27 27 C 1.53000 * 117.50568 * 248.74873 * 26 10 2 28 28 C 1.52999 * 117.49940 * 180.08382 * 26 10 2 29 29 H 1.08994 * 109.47236 * 296.09502 * 1 2 3 30 30 H 1.09001 * 109.46993 * 176.08996 * 1 2 3 31 31 H 1.09002 * 109.46957 * 56.09223 * 1 2 3 32 32 H 1.09003 * 110.91472 * 33.06390 * 5 3 2 33 33 H 1.09000 * 110.38188 * 336.14118 * 6 5 3 34 34 H 1.09001 * 110.38897 * 98.52144 * 6 5 3 35 35 H 1.08003 * 124.44787 * 196.45329 * 7 6 5 36 36 H 1.08005 * 124.44754 * 180.02562 * 8 7 6 37 37 H 1.08992 * 110.39151 * 224.75212 * 9 8 7 38 38 H 1.09005 * 110.48032 * 102.42271 * 9 8 7 39 39 H 1.09003 * 109.47876 * 64.99784 * 12 10 2 40 40 H 1.09001 * 109.47308 * 184.99946 * 12 10 2 41 41 H 1.00905 * 111.00094 * 56.04579 * 13 12 10 42 42 H 1.08997 * 109.47065 * 299.99985 * 14 13 12 43 43 H 1.09006 * 109.46823 * 60.00344 * 14 13 12 44 44 H 0.97000 * 120.00071 * 0.02562 * 17 15 14 45 45 H 0.96998 * 119.99837 * 179.97438 * 21 20 18 46 46 H 1.09007 * 115.54574 * 34.42080 * 26 10 2 47 47 H 1.09004 * 117.49175 * 359.97438 * 27 26 10 48 48 H 1.08995 * 117.50217 * 145.01962 * 27 26 10 49 49 H 1.09002 * 117.49812 * 214.97907 * 28 26 10 50 50 H 1.08999 * 117.50028 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5364 2.2152 0.0978 5 6 3.6410 1.1700 -0.1216 6 6 4.3107 1.1276 1.2716 7 6 5.5249 2.0175 1.1412 8 6 5.4379 2.7794 0.0850 9 6 4.1517 2.5243 -0.6656 10 6 2.1975 -1.2688 0.0006 11 1 3.2691 -1.0696 0.0009 12 6 1.8278 -2.0705 1.2501 13 7 2.0712 -1.2532 2.4462 14 6 1.7260 -1.9921 3.6680 15 6 1.9877 -1.1234 4.8713 16 8 2.4190 0.0009 4.7254 17 7 1.7427 -1.5956 6.1096 18 6 1.9803 -0.8052 7.2042 19 1 2.3635 0.1961 7.0742 20 6 1.7282 -1.2923 8.4808 21 7 1.9555 -0.5344 9.5301 22 14 1.0661 -3.0245 8.7057 23 1 2.1998 -3.9747 8.8365 24 1 0.2301 -3.0796 9.9317 25 1 0.2421 -3.3963 7.5276 26 6 1.8279 -2.0716 -1.2483 27 6 1.0115 -3.3503 -1.0503 28 6 2.4914 -3.4380 -1.4317 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 -1.0253 -0.0701 31 1 -0.3633 0.5733 -0.8529 32 1 3.9824 0.3442 -0.7458 33 1 3.6332 1.5185 2.0306 34 1 4.6111 0.1091 1.5177 35 1 6.3557 2.0223 1.8313 36 1 6.1875 3.4974 -0.2138 37 1 4.3439 2.4558 -1.7362 38 1 3.4275 3.3127 -0.4602 39 1 0.7740 -2.3460 1.2066 40 1 2.4375 -2.9728 1.2964 41 1 1.5666 -0.3808 2.3969 42 1 0.6715 -2.2665 3.6410 43 1 2.3348 -2.8941 3.7313 44 1 1.3982 -2.4949 6.2263 45 1 1.7791 -0.8744 10.4213 46 1 1.6317 -1.4830 -2.1445 47 1 0.7380 -3.6198 -0.0301 48 1 0.2785 -3.6032 -1.8163 49 1 2.7312 -3.7485 -2.4486 50 1 3.1909 -3.7652 -0.6625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700717364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:57 Heat of formation + Delta-G solvation = -32.434182 kcal Electronic energy + Delta-G solvation = -30177.805948 eV Core-core repulsion = 26205.778857 eV Total energy + Delta-G solvation = -3972.027091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69547 -40.30047 -39.52119 -38.40225 -36.55771 -35.97935 -35.38684 -33.74172 -31.14838 -30.49257 -29.11442 -28.29174 -27.41043 -25.81218 -24.10973 -23.11493 -22.88113 -21.36180 -21.10617 -20.31662 -19.78499 -19.35104 -18.56240 -17.95201 -17.25743 -17.10237 -16.86462 -16.65161 -16.38027 -16.21763 -15.58231 -15.52324 -15.10639 -14.94099 -14.52915 -14.44430 -13.99055 -13.90977 -13.84009 -13.51408 -13.47964 -13.19378 -13.04712 -13.03582 -12.96851 -12.77205 -12.47580 -12.41543 -12.23890 -12.12189 -12.11130 -12.02600 -11.98397 -11.51016 -11.28410 -10.90531 -10.76022 -10.44388 -10.24642 -9.80055 -9.75341 -9.29172 -8.41462 -6.02563 1.29121 1.34751 1.35531 1.44198 1.55864 1.93495 1.96868 2.22868 2.69706 2.95830 3.14806 3.35057 3.41291 3.62666 3.78812 3.88126 3.91034 4.02856 4.14284 4.16082 4.20249 4.28785 4.37969 4.41756 4.44870 4.50459 4.54010 4.59012 4.67827 4.71930 4.78798 4.82172 4.86035 4.87125 4.95217 4.95850 5.11644 5.15056 5.18562 5.29380 5.37509 5.51699 5.54870 5.63004 5.89367 5.99133 6.03282 6.26736 6.33835 6.59668 6.88550 7.13157 7.39990 7.97843 8.76544 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003393 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.257935 B = 8250.682721 C = 9845.843413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.601 5.601 3 C 0.523 3.477 4 O -0.583 6.583 5 C -0.108 4.108 6 C -0.074 4.074 7 C -0.177 4.177 8 C -0.162 4.162 9 C -0.090 4.090 10 C 0.168 3.832 11 H 0.107 0.893 12 C 0.045 3.955 13 N -0.680 5.680 14 C 0.063 3.937 15 C 0.446 3.554 16 O -0.613 6.613 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.051 0.949 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.230 1.230 26 C -0.170 4.170 27 C -0.181 4.181 28 C -0.161 4.161 29 H 0.035 0.965 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.336 0.664 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -11.733 -26.920 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.332 5.332 3 C 0.313 3.687 4 O -0.464 6.464 5 C -0.128 4.128 6 C -0.111 4.111 7 C -0.195 4.195 8 C -0.179 4.179 9 C -0.127 4.127 10 C 0.065 3.935 11 H 0.125 0.875 12 C -0.084 4.084 13 N -0.312 5.312 14 C -0.069 4.069 15 C 0.234 3.766 16 O -0.497 6.497 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.069 0.931 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.154 1.154 26 C -0.190 4.190 27 C -0.217 4.217 28 C -0.198 4.198 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.154 0.846 42 H 0.091 0.909 43 H 0.140 0.860 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.014 -10.573 -26.718 28.751 hybrid contribution -1.383 -0.033 1.156 1.803 sum -0.369 -10.607 -25.562 27.678 Atomic orbital electron populations 1.21603 0.79185 1.03617 1.01044 1.47906 1.07052 1.05874 1.72388 1.20806 0.90530 0.82911 0.74453 1.90657 1.71227 1.33084 1.51394 1.22193 0.90123 1.01310 0.99221 1.21101 0.94836 1.00814 0.94377 1.23402 0.98376 0.98901 0.98811 1.23418 0.97759 0.99771 0.96994 1.21336 0.95293 0.95293 1.00762 1.20936 0.97511 0.81930 0.93121 0.87486 1.22655 1.00942 0.96745 0.88023 1.60045 1.63704 1.06811 1.00648 1.21643 1.01471 0.96495 0.87339 1.21076 0.81965 0.88623 0.84955 1.90573 1.49923 1.22836 1.86334 1.42013 1.60380 1.15644 1.05266 1.18984 1.43081 0.98468 0.85242 0.93053 1.26151 0.97275 1.04293 0.93775 1.69820 1.49017 1.39605 0.99289 0.85331 0.79458 0.76709 0.79770 1.17950 1.20177 1.15369 1.22497 1.07700 0.90558 0.98233 1.23262 0.94908 0.99830 1.03730 1.23073 0.95783 0.97213 1.03766 0.94611 0.87901 0.92154 0.85545 0.93957 0.89621 0.84997 0.83434 0.88697 0.91445 0.92949 0.87538 0.84588 0.90944 0.86036 0.77464 0.91180 0.87352 0.87693 0.88113 0.87670 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.79 9.32 127.77 1.19 2.98 16 2 N -0.60 -13.08 1.83 -822.62 -1.51 -14.59 16 3 C 0.52 14.89 6.78 87.65 0.59 15.49 16 4 O -0.58 -21.83 15.66 -3.03 -0.05 -21.88 16 5 C -0.11 -2.55 2.49 -10.43 -0.03 -2.57 16 6 C -0.07 -2.11 6.23 30.53 0.19 -1.92 16 7 C -0.18 -4.51 10.77 26.26 0.28 -4.23 16 8 C -0.16 -3.58 10.77 26.26 0.28 -3.29 16 9 C -0.09 -2.08 6.32 30.53 0.19 -1.88 16 10 C 0.17 2.66 2.50 44.99 0.11 2.77 16 11 H 0.11 1.75 5.25 -2.39 -0.01 1.74 16 12 C 0.05 0.75 3.65 86.30 0.32 1.07 16 13 N -0.68 -18.51 6.12 -517.93 -3.17 -21.68 16 14 C 0.06 1.80 6.17 85.56 0.53 2.33 16 15 C 0.45 20.01 7.82 87.66 0.69 20.69 16 16 O -0.61 -34.37 15.78 -3.09 -0.05 -34.42 16 17 N -0.59 -27.78 5.09 -306.99 -1.56 -29.35 16 18 C -0.33 -19.46 10.16 84.04 0.85 -18.61 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 20 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 21 N -0.94 -57.16 13.96 21.66 0.30 -56.86 16 22 Si 0.97 38.69 27.74 68.60 1.90 40.59 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 26 C -0.17 -1.82 5.20 -10.80 -0.06 -1.87 16 27 C -0.18 -1.48 9.48 30.62 0.29 -1.19 16 28 C -0.16 -1.25 9.94 30.62 0.30 -0.95 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.44 6.71 -2.39 -0.02 1.43 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.13 2.20 6.56 -2.39 -0.02 2.18 16 33 H 0.04 1.62 7.88 -2.39 -0.02 1.60 16 34 H 0.09 2.35 7.99 -2.39 -0.02 2.33 16 35 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.96 6.88 -2.38 -0.02 1.94 16 39 H 0.05 0.75 5.77 -2.39 -0.01 0.73 16 40 H 0.11 1.36 7.44 -2.39 -0.02 1.34 16 41 H 0.34 11.21 7.56 -89.69 -0.68 10.54 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 44 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 45 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.10 0.84 5.80 -2.38 -0.01 0.83 16 48 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.10 0.75 7.65 -2.39 -0.02 0.73 16 Total: -1.00 -83.32 398.23 1.77 -81.55 By element: Atomic # 1 Polarization: 48.59 SS G_CDS: -0.31 Total: 48.28 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.21 Total: 8.35 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.94 Total: -122.47 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -0.10 Total: -56.30 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Total: -83.32 1.77 -81.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700717364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.119 kcal (2) G-P(sol) polarization free energy of solvation -83.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds