Wall clock time and date at job start Tue Mar 31 2020 18:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00369 * 2 1 4 4 C 1.52991 * 109.47371 * 270.00020 * 3 2 1 5 5 O 1.42899 * 109.47198 * 64.99494 * 4 3 2 6 6 C 1.42900 * 113.99966 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47029 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47323 * 64.99866 * 7 6 5 9 9 C 1.36939 * 120.00220 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99784 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99834 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00075 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99666 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47057 * 59.99962 * 13 11 9 15 15 H 1.48502 * 109.46859 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47315 * 299.99387 * 13 11 9 17 17 C 1.34781 * 120.00227 * 179.97438 * 2 1 3 18 18 O 1.21692 * 120.00631 * 180.90200 * 17 2 1 19 19 C 1.46682 * 119.99413 * 0.90187 * 17 2 1 20 20 C 1.38051 * 126.20202 * 168.73125 * 19 17 2 21 21 C 1.39240 * 106.97759 * 179.97438 * 20 19 17 22 22 C 1.35969 * 108.04148 * 0.04687 * 21 20 19 23 23 N 1.35121 * 108.76143 * 359.91382 * 22 21 20 24 24 H 0.96996 * 125.68602 * 180.02562 * 23 22 21 25 25 C 1.51021 * 123.85621 * 179.82784 * 22 21 20 26 26 C 1.53319 * 108.40499 * 343.34279 * 25 22 21 27 27 C 1.53106 * 109.52694 * 50.18115 * 26 25 22 28 28 C 1.50837 * 127.70822 * 180.31532 * 21 20 19 29 29 H 1.08997 * 109.47422 * 263.45227 * 1 2 3 30 30 H 1.09008 * 109.46649 * 23.44474 * 1 2 3 31 31 H 1.08991 * 109.47363 * 143.44206 * 1 2 3 32 32 H 1.08997 * 109.46814 * 30.00071 * 3 2 1 33 33 H 1.09003 * 109.47272 * 149.99400 * 3 2 1 34 34 H 1.08992 * 109.47581 * 185.00129 * 4 3 2 35 35 H 1.09006 * 109.46885 * 305.00165 * 4 3 2 36 36 H 1.09003 * 109.47353 * 299.99782 * 6 5 4 37 37 H 1.09000 * 109.47511 * 60.00071 * 6 5 4 38 38 H 1.09000 * 109.47632 * 185.00044 * 7 6 5 39 39 H 1.09000 * 109.47215 * 304.99840 * 7 6 5 40 40 H 0.97007 * 119.99551 * 359.97438 * 8 7 6 41 41 H 0.96996 * 119.99840 * 180.02562 * 12 11 9 42 42 H 1.08002 * 126.51452 * 359.97438 * 20 19 17 43 43 H 1.08993 * 109.67941 * 103.07644 * 25 22 21 44 44 H 1.09005 * 109.67582 * 223.61490 * 25 22 21 45 45 H 1.08999 * 109.45975 * 170.20018 * 26 25 22 46 46 H 1.09003 * 109.46365 * 290.16321 * 26 25 22 47 47 H 1.09005 * 109.47296 * 49.58574 * 27 26 25 48 48 H 1.08998 * 109.47135 * 169.58493 * 27 26 25 49 49 H 1.08995 * 109.68372 * 283.00953 * 28 21 20 50 50 H 1.09009 * 109.68052 * 43.55898 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 8 1.2061 1.9935 -2.0813 6 6 1.3326 2.4164 -3.4405 7 6 -0.0564 2.6908 -4.0205 8 7 -0.6644 3.8230 -3.3173 9 6 -1.9167 4.2533 -3.6664 10 1 -2.4559 3.7583 -4.4604 11 6 -2.4926 5.3265 -3.0003 12 7 -1.8352 5.9301 -2.0329 13 14 -4.2005 5.9139 -3.4771 14 1 -5.1747 4.8093 -3.2874 15 1 -4.5849 7.0648 -2.6210 16 1 -4.1998 6.3343 -4.9013 17 6 2.1389 -1.1672 0.0005 18 8 3.3557 -1.1674 0.0171 19 6 1.4055 -2.4374 -0.0189 20 6 1.9469 -3.6882 -0.2385 21 6 0.8991 -4.6026 -0.1694 22 6 -0.2451 -3.9135 0.0851 23 7 0.0514 -2.5986 0.1795 24 1 -0.5832 -1.8867 0.3565 25 6 -1.6025 -4.5599 0.2279 26 6 -1.5300 -5.9733 -0.3617 27 6 -0.3219 -6.7102 0.2227 28 6 0.9693 -6.1003 -0.3337 29 1 -0.3634 -0.1172 1.0209 30 1 -0.3633 0.9429 -0.4089 31 1 -0.3633 -0.8254 -0.6121 32 1 1.6085 2.0283 0.5138 33 1 3.1499 1.1384 0.5139 34 1 3.0733 2.6063 -1.4437 35 1 2.9643 0.9130 -1.9814 36 1 1.9302 3.3270 -3.4836 37 1 1.8209 1.6335 -4.0207 38 1 0.0328 2.9272 -5.0808 39 1 -0.6828 1.8074 -3.8967 40 1 -0.1802 4.2674 -2.6038 41 1 -2.2377 6.6797 -1.5673 42 1 2.9858 -3.9146 -0.4280 43 1 -1.8735 -4.6153 1.2821 44 1 -2.3464 -3.9745 -0.3125 45 1 -2.4417 -6.5171 -0.1143 46 1 -1.4276 -5.9101 -1.4451 47 1 -0.3279 -6.6140 1.3085 48 1 -0.3732 -7.7646 -0.0489 49 1 1.0617 -6.3498 -1.3907 50 1 1.8286 -6.4897 0.2123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701040026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:38 Heat of formation + Delta-G solvation = -39.651936 kcal Electronic energy + Delta-G solvation = -29088.153869 eV Core-core repulsion = 25115.813793 eV Total energy + Delta-G solvation = -3972.340077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.77304 -40.62778 -39.04294 -37.28345 -36.90018 -36.17945 -33.49856 -33.16069 -31.77370 -30.10750 -29.71813 -29.18696 -27.68040 -25.61102 -25.37701 -23.78143 -22.87895 -22.76058 -21.97200 -20.85217 -19.60423 -19.25394 -18.52998 -17.77762 -17.56048 -17.10447 -16.84231 -16.73026 -16.16594 -15.90945 -15.56502 -15.22308 -14.91678 -14.83365 -14.67675 -14.64459 -14.48436 -14.22353 -14.08178 -13.97788 -13.51822 -13.38493 -13.28650 -13.17795 -13.03353 -12.80060 -12.73033 -12.63898 -12.52973 -12.19275 -11.93706 -11.71727 -11.65346 -11.54019 -11.33808 -11.25542 -10.96103 -10.55564 -9.98814 -9.71263 -8.99143 -8.91418 -7.93166 -5.22079 0.39154 1.47681 1.50729 1.56961 1.64249 1.78005 2.11860 2.29619 2.56803 2.72723 3.40213 3.47876 3.76826 3.91036 3.93545 3.97754 3.99479 4.08585 4.12528 4.19649 4.23879 4.34630 4.39562 4.42481 4.42813 4.46689 4.55718 4.62271 4.67509 4.69241 4.73213 4.76608 4.77487 4.97379 4.98539 5.08471 5.10086 5.13162 5.21091 5.29283 5.37960 5.39044 5.48603 5.53878 5.85117 5.94935 6.18091 6.26942 6.31173 6.45085 6.96130 7.34795 8.09868 8.35196 9.30070 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002529 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.192292 B =11070.323118 C =12506.562971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.603 5.603 3 C 0.121 3.879 4 C 0.046 3.954 5 O -0.391 6.391 6 C 0.066 3.934 7 C 0.153 3.847 8 N -0.739 5.739 9 C -0.247 4.247 10 H 0.075 0.925 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.277 1.277 15 H -0.295 1.295 16 H -0.278 1.278 17 C 0.585 3.415 18 O -0.573 6.573 19 C -0.079 4.079 20 C -0.114 4.114 21 C -0.190 4.190 22 C 0.054 3.946 23 N -0.529 5.529 24 H 0.428 0.572 25 C -0.056 4.056 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.048 4.048 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.022 0.978 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -25.228 6.462 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.334 5.334 3 C -0.002 4.002 4 C -0.031 4.031 5 O -0.310 6.310 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.382 5.382 9 C -0.379 4.379 10 H 0.093 0.907 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.203 1.203 15 H -0.222 1.222 16 H -0.205 1.205 17 C 0.376 3.624 18 O -0.453 6.453 19 C -0.191 4.191 20 C -0.141 4.141 21 C -0.196 4.196 22 C -0.066 4.066 23 N -0.133 5.133 24 H 0.276 0.724 25 C -0.094 4.094 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.085 4.085 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.157 0.843 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.412 -25.030 6.500 26.084 hybrid contribution -0.365 1.466 -0.115 1.515 sum 3.046 -23.563 6.384 24.602 Atomic orbital electron populations 1.22279 0.78662 1.04810 1.02266 1.47699 1.07710 1.05541 1.72497 1.21624 0.98841 0.84439 0.95268 1.22945 0.86620 0.99544 0.94016 1.87944 1.29595 1.87640 1.25840 1.22644 0.97157 0.98461 0.82764 1.20833 0.91813 0.89941 0.94787 1.42462 1.17301 1.36054 1.42399 1.19602 0.93608 1.10601 1.14059 0.90735 1.25564 1.02552 0.99440 0.99126 1.69823 1.39493 1.25446 1.27095 0.85209 0.79883 0.77339 0.77296 1.20280 1.22159 1.20464 1.17396 0.86424 0.82740 0.75837 1.90773 1.13978 1.87312 1.53272 1.20135 0.84006 0.94632 1.20345 1.21138 0.99591 0.90272 1.03095 1.19614 0.91663 0.96912 1.11392 1.21159 0.98347 0.82855 1.04239 1.42932 1.07352 1.08723 1.54279 0.72404 1.20510 0.89211 0.96443 1.03195 1.21542 0.99361 0.93595 1.00464 1.21575 0.93345 0.99911 1.00560 1.20111 0.98995 0.88096 1.01329 0.90034 0.89649 0.90530 0.88480 0.87856 0.91175 0.93924 0.93293 0.91342 0.94040 0.95997 0.79231 0.94038 0.84319 0.88703 0.89426 0.89080 0.91887 0.91775 0.89962 0.91115 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.40 8.64 127.77 1.10 2.51 16 2 N -0.60 -16.05 2.84 -851.52 -2.42 -18.46 16 3 C 0.12 3.16 5.79 86.38 0.50 3.66 16 4 C 0.05 1.32 6.28 71.98 0.45 1.77 16 5 O -0.39 -13.43 9.24 -148.98 -1.38 -14.81 16 6 C 0.07 2.23 6.07 71.98 0.44 2.66 16 7 C 0.15 6.20 6.65 86.38 0.57 6.78 16 8 N -0.74 -38.08 5.55 -343.45 -1.91 -39.98 16 9 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 10 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 11 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 12 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 13 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 C 0.58 17.56 7.64 86.45 0.66 18.22 16 18 O -0.57 -20.50 16.48 -4.32 -0.07 -20.57 16 19 C -0.08 -2.08 6.65 40.37 0.27 -1.82 16 20 C -0.11 -2.92 10.64 22.47 0.24 -2.68 16 21 C -0.19 -3.92 5.91 -20.11 -0.12 -4.04 16 22 C 0.05 0.98 7.02 41.63 0.29 1.27 16 23 N -0.53 -10.72 5.02 -171.29 -0.86 -11.58 16 24 H 0.43 6.99 4.96 -92.71 -0.46 6.53 16 25 C -0.06 -0.63 6.30 30.06 0.19 -0.44 16 26 C -0.11 -1.05 5.89 30.74 0.18 -0.87 16 27 C -0.12 -1.19 5.90 30.71 0.18 -1.01 16 28 C -0.05 -0.70 6.27 29.98 0.19 -0.51 16 29 H 0.08 1.37 7.71 -2.39 -0.02 1.36 16 30 H 0.08 2.33 7.26 -2.38 -0.02 2.31 16 31 H 0.08 1.59 5.21 -2.39 -0.01 1.58 16 32 H 0.10 2.42 8.07 -2.39 -0.02 2.40 16 33 H 0.10 2.60 7.41 -2.39 -0.02 2.58 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.38 20.76 7.67 -92.70 -0.71 20.05 16 41 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 47 H 0.06 0.67 8.11 -2.38 -0.02 0.65 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -73.13 400.62 1.91 -71.22 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.22 Total: 36.59 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.45 Total: 8.69 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -4.90 Total: -128.88 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.45 Total: -35.37 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.13 1.91 -71.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701040026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.569 kcal (2) G-P(sol) polarization free energy of solvation -73.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds