Wall clock time and date at job start Tue Mar 31 2020 18:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00336 * 2 1 4 4 C 1.52998 * 109.46999 * 90.00046 * 3 2 1 5 5 O 1.42896 * 109.47268 * 65.00351 * 4 3 2 6 6 C 1.42900 * 114.00058 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47155 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46809 * 65.00340 * 7 6 5 9 9 C 1.36935 * 120.00092 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99765 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00361 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99547 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00230 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47075 * 59.99902 * 13 11 9 15 15 H 1.48503 * 109.47045 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47042 * 299.99517 * 13 11 9 17 17 C 1.34778 * 120.00038 * 180.02562 * 2 1 3 18 18 O 1.21629 * 120.00488 * 186.48900 * 17 2 1 19 19 C 1.47270 * 119.99757 * 6.48582 * 17 2 1 20 20 C 1.46748 * 126.92051 * 188.27313 * 19 17 2 21 21 C 1.34062 * 106.30651 * 179.97438 * 20 19 17 22 22 N 1.37082 * 109.04856 * 0.02562 * 21 20 19 23 23 C 1.34588 * 109.94460 * 359.71877 * 22 21 20 24 24 C 1.47029 * 123.95889 * 179.89650 * 22 21 20 25 25 C 1.53142 * 108.83395 * 342.45730 * 24 22 21 26 26 C 1.53123 * 109.59386 * 51.21229 * 25 24 22 27 27 C 1.51096 * 126.72792 * 180.02562 * 21 20 19 28 28 H 1.08992 * 109.46972 * 95.89278 * 1 2 3 29 29 H 1.09000 * 109.47013 * 215.89580 * 1 2 3 30 30 H 1.08996 * 109.46802 * 335.89448 * 1 2 3 31 31 H 1.08998 * 109.46660 * 329.99780 * 3 2 1 32 32 H 1.09000 * 109.47263 * 209.99946 * 3 2 1 33 33 H 1.08998 * 109.47186 * 185.00107 * 4 3 2 34 34 H 1.09002 * 109.47353 * 304.99965 * 4 3 2 35 35 H 1.08998 * 109.47394 * 300.00195 * 6 5 4 36 36 H 1.08998 * 109.47136 * 60.00273 * 6 5 4 37 37 H 1.08995 * 109.46953 * 184.99708 * 7 6 5 38 38 H 1.08994 * 109.47044 * 305.00105 * 7 6 5 39 39 H 0.96997 * 119.99865 * 359.97438 * 8 7 6 40 40 H 0.97007 * 119.99786 * 180.02562 * 12 11 9 41 41 H 1.08001 * 126.84404 * 359.94060 * 20 19 17 42 42 H 1.07992 * 125.72626 * 180.30802 * 23 22 21 43 43 H 1.08996 * 109.57476 * 102.26698 * 24 22 21 44 44 H 1.08997 * 109.57433 * 222.65619 * 24 22 21 45 45 H 1.09009 * 109.44747 * 171.24723 * 25 24 22 46 46 H 1.08993 * 109.45612 * 291.16803 * 25 24 22 47 47 H 1.09000 * 109.52785 * 49.73227 * 26 25 24 48 48 H 1.09004 * 109.52473 * 169.86409 * 26 25 24 49 49 H 1.09000 * 109.72013 * 283.90663 * 27 21 20 50 50 H 1.09000 * 109.71489 * 44.55315 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3210 0.7724 2.0813 6 6 3.6250 1.0939 3.4401 7 6 4.5560 0.0274 4.0205 8 7 5.8404 0.0650 3.3167 9 6 6.8386 -0.8045 3.6667 10 1 6.6790 -1.5184 4.4612 11 6 8.0554 -0.7692 2.9995 12 7 8.2493 0.0998 2.0302 13 14 9.4169 -1.9559 3.4764 14 1 8.9453 -3.3515 3.2890 15 1 10.6054 -1.7161 2.6190 16 1 9.7822 -1.7438 4.9001 17 6 2.1389 -1.1672 -0.0005 18 8 3.3493 -1.1707 0.1185 19 6 1.4096 -2.4384 -0.1452 20 6 1.9587 -3.7914 0.0013 21 6 0.9406 -4.6363 -0.2151 22 7 -0.1921 -3.9125 -0.4839 23 6 0.0827 -2.5958 -0.4374 24 6 -1.5021 -4.5143 -0.7727 25 6 -1.2981 -5.9840 -1.1521 26 6 -0.4416 -6.6750 -0.0874 27 6 0.9955 -6.1458 -0.1773 28 1 -0.3633 -0.1055 -1.0222 29 1 -0.3633 -0.8325 0.6025 30 1 -0.3633 0.9380 0.4197 31 1 1.6085 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 2.9182 2.6958 1.4438 34 1 1.5063 1.7549 1.9816 35 1 4.1151 2.0665 3.4825 36 1 2.7032 1.1259 4.0209 37 1 4.7168 0.2234 5.0806 38 1 4.1029 -0.9563 3.8975 39 1 5.9836 0.7059 2.6029 40 1 9.0995 0.1242 1.5637 41 1 2.9797 -4.0540 0.2361 42 1 -0.6252 -1.7976 -0.6048 43 1 -2.1365 -4.4499 0.1112 44 1 -1.9723 -3.9851 -1.6015 45 1 -2.2667 -6.4799 -1.2167 46 1 -0.7953 -6.0434 -2.1173 47 1 -0.8476 -6.4620 0.9015 48 1 -0.4457 -7.7514 -0.2589 49 1 1.4692 -6.5195 -1.0851 50 1 1.5625 -6.4714 0.6948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701042401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:42 Heat of formation + Delta-G solvation = 0.174023 kcal Electronic energy + Delta-G solvation = -29553.049035 eV Core-core repulsion = 25582.435941 eV Total energy + Delta-G solvation = -3970.613093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62388 -39.19583 -37.33908 -36.04070 -35.27229 -34.11428 -32.86119 -31.44700 -30.51973 -28.91854 -27.73607 -27.21248 -26.62269 -24.74766 -23.29575 -23.00318 -21.85407 -21.11852 -20.88470 -18.97027 -18.91962 -16.93859 -16.90083 -16.43284 -16.17029 -15.84665 -15.63262 -15.23945 -14.86220 -14.54296 -14.33149 -14.09141 -14.00670 -13.84874 -13.55802 -13.27070 -13.04897 -12.79068 -12.71596 -12.56037 -12.54106 -12.38031 -11.83025 -11.63930 -11.61216 -11.46025 -11.34303 -11.21226 -11.13194 -11.07087 -10.69039 -10.59573 -10.27802 -9.82145 -9.46815 -9.30986 -8.94614 -8.62131 -8.50105 -8.33164 -8.10366 -6.61084 -5.48179 -2.74737 1.91312 2.52750 2.69002 3.27606 3.61237 3.64652 3.66579 3.95702 4.12271 4.25322 4.27320 4.35265 4.57920 4.76223 4.82721 4.85456 4.95186 4.98023 5.11380 5.12607 5.20141 5.28020 5.36434 5.41901 5.46049 5.48824 5.49481 5.53795 5.61151 5.67099 5.73092 5.73938 5.81084 5.84290 5.94687 6.03696 6.16524 6.21438 6.23931 6.61066 6.72974 6.83996 6.92964 7.03418 7.09065 7.22465 7.76695 7.90376 7.94090 8.70300 8.84012 9.81227 10.42677 10.78907 11.75035 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003162 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.186329 B = 8853.169770 C =10799.184598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.620 5.620 3 C 0.123 3.877 4 C 0.043 3.957 5 O -0.347 6.347 6 C 0.057 3.943 7 C 0.158 3.842 8 N -0.722 5.722 9 C -0.232 4.232 10 H 0.066 0.934 11 C -0.016 4.016 12 N -0.931 5.931 13 Si 0.905 3.095 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.288 1.288 17 C 0.578 3.422 18 O -0.490 6.490 19 C -0.213 4.213 20 C -0.131 4.131 21 C 0.006 3.994 22 N -0.445 5.445 23 C 0.019 3.981 24 C 0.103 3.897 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.051 4.051 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.387 0.613 40 H 0.252 0.748 41 H 0.149 0.851 42 H 0.182 0.818 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.075 -6.426 -8.214 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.357 5.357 3 C 0.000 4.000 4 C -0.036 4.036 5 O -0.265 6.265 6 C -0.020 4.020 7 C 0.030 3.970 8 N -0.366 5.366 9 C -0.364 4.364 10 H 0.084 0.916 11 C -0.211 4.211 12 N -0.581 5.581 13 Si 0.736 3.264 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.215 1.215 17 C 0.366 3.634 18 O -0.362 6.362 19 C -0.223 4.223 20 C -0.155 4.155 21 C -0.102 4.102 22 N -0.123 5.123 23 C -0.114 4.114 24 C -0.018 4.018 25 C -0.171 4.171 26 C -0.162 4.162 27 C -0.089 4.089 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.221 0.779 40 H 0.062 0.938 41 H 0.166 0.834 42 H 0.198 0.802 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.543 -6.888 -8.243 30.497 hybrid contribution 0.445 0.000 0.184 0.481 sum -28.099 -6.888 -8.059 30.032 Atomic orbital electron populations 1.22142 0.81269 1.03028 1.00640 1.47523 1.05730 1.05960 1.76438 1.21441 0.98283 0.84669 0.95575 1.22848 0.93398 0.93105 0.94236 1.88296 1.66208 1.47285 1.24716 1.22751 0.97046 0.99071 0.83133 1.20620 0.86873 0.95479 0.94043 1.42223 1.09349 1.42921 1.42149 1.19170 0.92070 1.11169 1.13942 0.91557 1.24702 0.98042 0.99623 0.98776 1.69679 1.24389 1.38315 1.25669 0.86291 0.81875 0.80952 0.77235 1.21396 1.21822 1.21538 1.17437 0.86974 0.82132 0.76814 1.90976 1.13173 1.86182 1.45864 1.20508 0.93074 0.93757 1.14990 1.21652 0.98654 0.89929 1.05305 1.20277 0.86086 0.93830 1.09983 1.43929 1.08508 1.05511 1.54332 1.22733 0.97166 0.85295 1.06183 1.22019 0.83089 0.94863 1.01821 1.21837 1.01563 0.93505 1.00224 1.21634 0.95129 1.00314 0.99136 1.20346 0.97104 0.88056 1.03411 0.93019 0.90582 0.91394 0.89793 0.88818 0.93134 0.94445 0.93765 0.94569 0.95530 0.95863 0.77876 0.93772 0.83365 0.80150 0.90159 0.89545 0.89783 0.90717 0.91365 0.90684 0.90214 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 8.66 59.85 0.52 1.16 16 2 N -0.62 -8.83 2.86 -182.91 -0.52 -9.36 16 3 C 0.12 1.73 5.82 -4.04 -0.02 1.70 16 4 C 0.04 0.65 6.28 37.16 0.23 0.89 16 5 O -0.35 -7.32 8.81 -49.30 -0.43 -7.75 16 6 C 0.06 1.13 6.07 37.16 0.23 1.36 16 7 C 0.16 3.78 6.65 -4.04 -0.03 3.75 16 8 N -0.72 -21.22 5.55 -59.91 -0.33 -21.56 16 9 C -0.23 -7.29 9.99 -15.06 -0.15 -7.44 16 10 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -31.08 13.06 55.49 0.72 -30.35 16 13 Si 0.90 24.44 29.55 -169.99 -5.02 19.42 16 14 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 15 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 16 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 17 C 0.58 10.73 7.36 -12.59 -0.09 10.64 16 18 O -0.49 -12.04 15.50 -8.82 -0.14 -12.18 16 19 C -0.21 -3.35 6.10 -103.32 -0.63 -3.98 16 20 C -0.13 -2.09 10.89 -37.61 -0.41 -2.50 16 21 C 0.01 0.07 6.53 -81.52 -0.53 -0.46 16 22 N -0.44 -4.52 3.11 -111.87 -0.35 -4.86 16 23 C 0.02 0.22 9.33 -16.87 -0.16 0.06 16 24 C 0.10 0.60 6.89 -3.68 -0.03 0.58 16 25 C -0.13 -0.67 5.91 -26.59 -0.16 -0.83 16 26 C -0.12 -0.77 5.96 -26.46 -0.16 -0.93 16 27 C -0.05 -0.45 6.26 -27.48 -0.17 -0.63 16 28 H 0.05 0.35 7.30 -51.93 -0.38 -0.03 16 29 H 0.08 0.65 5.47 -51.93 -0.28 0.37 16 30 H 0.07 0.47 8.03 -51.93 -0.42 0.05 16 31 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.09 1.61 7.52 -51.93 -0.39 1.22 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.39 12.10 7.67 -40.82 -0.31 11.78 16 40 H 0.25 8.10 8.31 -40.82 -0.34 7.76 16 41 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 42 H 0.18 1.38 4.45 -52.49 -0.23 1.15 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 46 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 47 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -41.71 400.59 -10.01 -51.72 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.32 Total: 6.14 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.65 Total: 2.75 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.48 Total: -66.13 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.57 Total: -19.93 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.02 Total: 19.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -41.71 -10.01 -51.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701042401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.892 kcal (2) G-P(sol) polarization free energy of solvation -41.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds