Wall clock time and date at job start Tue Mar 31 2020 18:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00336 * 2 1 4 4 C 1.52998 * 109.46999 * 90.00046 * 3 2 1 5 5 O 1.42896 * 109.47268 * 65.00351 * 4 3 2 6 6 C 1.42900 * 114.00058 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47155 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46809 * 65.00340 * 7 6 5 9 9 C 1.36935 * 120.00092 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99765 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00361 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99547 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00230 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47075 * 59.99902 * 13 11 9 15 15 H 1.48503 * 109.47045 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47042 * 299.99517 * 13 11 9 17 17 C 1.34778 * 120.00038 * 180.02562 * 2 1 3 18 18 O 1.21629 * 120.00488 * 186.48900 * 17 2 1 19 19 C 1.47270 * 119.99757 * 6.48582 * 17 2 1 20 20 C 1.46748 * 126.92051 * 188.27313 * 19 17 2 21 21 C 1.34062 * 106.30651 * 179.97438 * 20 19 17 22 22 N 1.37082 * 109.04856 * 0.02562 * 21 20 19 23 23 C 1.34588 * 109.94460 * 359.71877 * 22 21 20 24 24 C 1.47029 * 123.95889 * 179.89650 * 22 21 20 25 25 C 1.53142 * 108.83395 * 342.45730 * 24 22 21 26 26 C 1.53123 * 109.59386 * 51.21229 * 25 24 22 27 27 C 1.51096 * 126.72792 * 180.02562 * 21 20 19 28 28 H 1.08992 * 109.46972 * 95.89278 * 1 2 3 29 29 H 1.09000 * 109.47013 * 215.89580 * 1 2 3 30 30 H 1.08996 * 109.46802 * 335.89448 * 1 2 3 31 31 H 1.08998 * 109.46660 * 329.99780 * 3 2 1 32 32 H 1.09000 * 109.47263 * 209.99946 * 3 2 1 33 33 H 1.08998 * 109.47186 * 185.00107 * 4 3 2 34 34 H 1.09002 * 109.47353 * 304.99965 * 4 3 2 35 35 H 1.08998 * 109.47394 * 300.00195 * 6 5 4 36 36 H 1.08998 * 109.47136 * 60.00273 * 6 5 4 37 37 H 1.08995 * 109.46953 * 184.99708 * 7 6 5 38 38 H 1.08994 * 109.47044 * 305.00105 * 7 6 5 39 39 H 0.96997 * 119.99865 * 359.97438 * 8 7 6 40 40 H 0.97007 * 119.99786 * 180.02562 * 12 11 9 41 41 H 1.08001 * 126.84404 * 359.94060 * 20 19 17 42 42 H 1.07992 * 125.72626 * 180.30802 * 23 22 21 43 43 H 1.08996 * 109.57476 * 102.26698 * 24 22 21 44 44 H 1.08997 * 109.57433 * 222.65619 * 24 22 21 45 45 H 1.09009 * 109.44747 * 171.24723 * 25 24 22 46 46 H 1.08993 * 109.45612 * 291.16803 * 25 24 22 47 47 H 1.09000 * 109.52785 * 49.73227 * 26 25 24 48 48 H 1.09004 * 109.52473 * 169.86409 * 26 25 24 49 49 H 1.09000 * 109.72013 * 283.90663 * 27 21 20 50 50 H 1.09000 * 109.71489 * 44.55315 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3210 0.7724 2.0813 6 6 3.6250 1.0939 3.4401 7 6 4.5560 0.0274 4.0205 8 7 5.8404 0.0650 3.3167 9 6 6.8386 -0.8045 3.6667 10 1 6.6790 -1.5184 4.4612 11 6 8.0554 -0.7692 2.9995 12 7 8.2493 0.0998 2.0302 13 14 9.4169 -1.9559 3.4764 14 1 8.9453 -3.3515 3.2890 15 1 10.6054 -1.7161 2.6190 16 1 9.7822 -1.7438 4.9001 17 6 2.1389 -1.1672 -0.0005 18 8 3.3493 -1.1707 0.1185 19 6 1.4096 -2.4384 -0.1452 20 6 1.9587 -3.7914 0.0013 21 6 0.9406 -4.6363 -0.2151 22 7 -0.1921 -3.9125 -0.4839 23 6 0.0827 -2.5958 -0.4374 24 6 -1.5021 -4.5143 -0.7727 25 6 -1.2981 -5.9840 -1.1521 26 6 -0.4416 -6.6750 -0.0874 27 6 0.9955 -6.1458 -0.1773 28 1 -0.3633 -0.1055 -1.0222 29 1 -0.3633 -0.8325 0.6025 30 1 -0.3633 0.9380 0.4197 31 1 1.6085 2.0283 -0.5139 32 1 3.1500 1.1383 -0.5138 33 1 2.9182 2.6958 1.4438 34 1 1.5063 1.7549 1.9816 35 1 4.1151 2.0665 3.4825 36 1 2.7032 1.1259 4.0209 37 1 4.7168 0.2234 5.0806 38 1 4.1029 -0.9563 3.8975 39 1 5.9836 0.7059 2.6029 40 1 9.0995 0.1242 1.5637 41 1 2.9797 -4.0540 0.2361 42 1 -0.6252 -1.7976 -0.6048 43 1 -2.1365 -4.4499 0.1112 44 1 -1.9723 -3.9851 -1.6015 45 1 -2.2667 -6.4799 -1.2167 46 1 -0.7953 -6.0434 -2.1173 47 1 -0.8476 -6.4620 0.9015 48 1 -0.4457 -7.7514 -0.2589 49 1 1.4692 -6.5195 -1.0851 50 1 1.5625 -6.4714 0.6948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701042401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:41 Heat of formation + Delta-G solvation = -29.967852 kcal Electronic energy + Delta-G solvation = -29554.356085 eV Core-core repulsion = 25582.435941 eV Total energy + Delta-G solvation = -3971.920143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53734 -40.41236 -38.84975 -36.76463 -36.68961 -36.07469 -33.63930 -33.45703 -31.86480 -30.05662 -29.16620 -28.40348 -27.56547 -25.62423 -25.43540 -24.05871 -22.80492 -22.53635 -22.15741 -20.05946 -19.70830 -19.25849 -17.85422 -17.68107 -17.38577 -16.91415 -16.77917 -16.62866 -16.18973 -16.01957 -15.47610 -15.11208 -15.05615 -14.83424 -14.72151 -14.58970 -14.49608 -14.23281 -14.14123 -13.79701 -13.57072 -13.45078 -13.21781 -13.01002 -12.73931 -12.68557 -12.57856 -12.43414 -12.23877 -12.16886 -11.93289 -11.89325 -11.76880 -11.69126 -11.65981 -10.96908 -10.74986 -10.38460 -9.63346 -9.38107 -9.08818 -8.98890 -7.92952 -5.22116 0.88495 1.40729 1.42517 1.48442 1.53732 1.89843 2.24798 2.55795 2.69802 2.93184 3.39550 3.62357 3.71261 3.83633 3.89071 3.95216 4.04230 4.09839 4.13889 4.25722 4.34377 4.34845 4.42840 4.43858 4.45897 4.49543 4.56572 4.57491 4.60086 4.61592 4.72315 4.85014 4.87082 4.90535 4.94677 4.96599 5.01830 5.06774 5.10601 5.12912 5.19816 5.32298 5.43548 5.69498 5.82761 6.08960 6.27369 6.40652 6.51818 6.64871 7.32649 7.56509 8.10248 8.34886 9.31274 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003162 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.186329 B = 8853.169770 C =10799.184598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.614 5.614 3 C 0.121 3.879 4 C 0.036 3.964 5 O -0.391 6.391 6 C 0.066 3.934 7 C 0.153 3.847 8 N -0.737 5.737 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.082 4.082 12 N -0.971 5.971 13 Si 0.981 3.019 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.268 1.268 17 C 0.568 3.432 18 O -0.579 6.579 19 C -0.263 4.263 20 C -0.192 4.192 21 C 0.022 3.978 22 N -0.437 5.437 23 C 0.057 3.943 24 C 0.093 3.907 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.057 4.057 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.002 0.998 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.943 -6.762 -8.287 35.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.348 5.348 3 C -0.001 4.001 4 C -0.042 4.042 5 O -0.310 6.310 6 C -0.011 4.011 7 C 0.026 3.974 8 N -0.379 5.379 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.274 4.274 12 N -0.622 5.622 13 Si 0.809 3.191 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.194 1.194 17 C 0.359 3.641 18 O -0.458 6.458 19 C -0.273 4.273 20 C -0.216 4.216 21 C -0.087 4.087 22 N -0.113 5.113 23 C -0.078 4.078 24 C -0.026 4.026 25 C -0.169 4.169 26 C -0.158 4.158 27 C -0.095 4.095 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.124 0.876 42 H 0.242 0.758 43 H 0.120 0.880 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.111 0.889 49 H 0.103 0.897 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -33.535 -7.219 -8.288 35.290 hybrid contribution 1.782 0.085 0.173 1.792 sum -31.753 -7.134 -8.115 33.541 Atomic orbital electron populations 1.22528 0.77396 1.05010 1.03031 1.47606 1.08109 1.04602 1.74476 1.21579 0.97502 0.85967 0.95100 1.23162 0.93877 0.92513 0.94623 1.88283 1.67926 1.49573 1.25261 1.22614 0.97729 0.97151 0.83567 1.20822 0.85588 0.96138 0.94851 1.42437 1.10997 1.42313 1.42202 1.19641 0.92958 1.11504 1.14057 0.90933 1.25712 1.00897 1.01838 0.98935 1.69878 1.24927 1.40306 1.27041 0.85107 0.78071 0.78220 0.77721 1.20891 1.21635 1.19404 1.18020 0.86288 0.84155 0.75605 1.90915 1.16841 1.87561 1.50478 1.20446 0.95354 0.92347 1.19150 1.21573 0.98361 0.92121 1.09571 1.20512 0.85818 0.95033 1.07330 1.44332 1.09587 1.05124 1.52250 1.23193 0.95567 0.86673 1.02349 1.22532 0.80637 0.95404 1.04008 1.21885 1.02782 0.93077 0.99157 1.21642 0.92855 1.01495 0.99780 1.20496 0.99686 0.85949 1.03328 0.89809 0.90181 0.88256 0.84281 0.93490 0.91966 0.91217 0.93382 0.90545 0.93600 0.98021 0.79595 0.94108 0.87567 0.75773 0.87979 0.86579 0.86566 0.91317 0.91390 0.88860 0.89749 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 8.66 127.77 1.11 1.94 16 2 N -0.61 -17.27 2.86 -850.85 -2.43 -19.70 16 3 C 0.12 3.39 5.82 86.38 0.50 3.89 16 4 C 0.04 1.07 6.28 71.98 0.45 1.52 16 5 O -0.39 -17.18 8.81 -135.53 -1.19 -18.37 16 6 C 0.07 2.64 6.07 71.98 0.44 3.08 16 7 C 0.15 7.59 6.65 86.38 0.57 8.16 16 8 N -0.74 -45.61 5.55 -343.45 -1.91 -47.52 16 9 C -0.25 -16.34 9.99 84.03 0.84 -15.50 16 10 H 0.07 4.53 7.83 -2.91 -0.02 4.50 16 11 C -0.08 -5.40 5.50 84.86 0.47 -4.93 16 12 N -0.97 -67.68 13.06 21.65 0.28 -67.40 16 13 Si 0.98 51.94 29.55 68.60 2.03 53.97 16 14 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 15 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 16 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 17 C 0.57 22.75 7.36 86.62 0.64 23.39 16 18 O -0.58 -31.95 15.50 9.33 0.14 -31.80 16 19 C -0.26 -8.78 6.10 -19.02 -0.12 -8.90 16 20 C -0.19 -6.89 10.89 23.54 0.26 -6.63 16 21 C 0.02 0.56 6.53 40.91 0.27 0.82 16 22 N -0.44 -7.88 3.11 -507.85 -1.58 -9.46 16 23 C 0.06 1.17 9.33 83.93 0.78 1.95 16 24 C 0.09 0.65 6.89 86.33 0.59 1.24 16 25 C -0.13 -0.78 5.91 30.68 0.18 -0.60 16 26 C -0.12 -1.17 5.96 30.77 0.18 -0.99 16 27 C -0.06 -1.01 6.26 30.11 0.19 -0.82 16 28 H 0.08 0.67 7.30 -2.39 -0.02 0.65 16 29 H 0.08 1.06 5.47 -2.39 -0.01 1.04 16 30 H 0.10 0.81 8.03 -2.39 -0.02 0.79 16 31 H 0.14 2.26 8.07 -2.39 -0.02 2.25 16 32 H 0.05 1.76 7.52 -2.39 -0.02 1.74 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.37 24.76 7.67 -92.71 -0.71 24.05 16 40 H 0.25 16.72 8.31 -92.70 -0.77 15.95 16 41 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 42 H 0.23 2.35 4.45 -2.91 -0.01 2.34 16 43 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 46 H 0.07 0.54 8.11 -2.39 -0.02 0.52 16 47 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 48 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -103.82 400.59 2.92 -100.89 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.22 Total: 31.76 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 7.35 Total: 7.63 kcal Atomic # 7 Polarization: -138.45 SS G_CDS: -5.63 Total: -144.08 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -1.05 Total: -50.18 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.03 Total: 53.97 kcal Total: -103.82 2.92 -100.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701042401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.926 kcal (2) G-P(sol) polarization free energy of solvation -103.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds