Wall clock time and date at job start Tue Mar 31 2020 18:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99585 * 2 1 4 4 C 1.52998 * 109.46852 * 90.00374 * 3 2 1 5 5 N 1.46907 * 109.47021 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99969 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47051 * 180.02562 * 6 5 4 8 8 O 1.21292 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99722 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99996 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99860 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47317 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47081 * 120.00006 * 14 12 10 17 17 H 1.48501 * 109.47213 * 240.00378 * 14 12 10 18 18 C 1.34773 * 120.00105 * 179.97438 * 2 1 3 19 19 O 1.21277 * 120.00288 * 179.97438 * 18 2 1 20 20 C 1.50705 * 119.99852 * 0.02562 * 18 2 1 21 21 H 1.08999 * 115.51152 * 34.64310 * 20 18 2 22 22 C 1.53002 * 117.42752 * 179.97438 * 20 18 2 23 23 H 1.08992 * 119.98890 * 354.14075 * 22 20 18 24 24 C 1.53006 * 117.42734 * 249.37982 * 20 18 2 25 25 H 1.08997 * 119.98438 * 4.74312 * 24 20 18 26 26 C 1.55921 * 117.17558 * 160.67005 * 24 20 18 27 27 H 1.09005 * 116.52784 * 262.67955 * 26 24 20 28 28 C 1.55920 * 104.50083 * 133.34792 * 26 24 20 29 29 C 1.54577 * 104.64832 * 289.71876 * 28 26 24 30 30 C 1.55922 * 104.64141 * 0.02562 * 29 28 26 31 31 H 1.08999 * 116.53222 * 199.60337 * 30 29 28 32 32 C 1.56950 * 100.65239 * 326.21831 * 30 29 28 33 33 H 1.08993 * 109.47331 * 90.00006 * 1 2 3 34 34 H 1.08999 * 109.47100 * 210.00287 * 1 2 3 35 35 H 1.08999 * 109.47208 * 329.99756 * 1 2 3 36 36 H 1.08990 * 109.47256 * 330.00072 * 3 2 1 37 37 H 1.08996 * 109.46789 * 209.99529 * 3 2 1 38 38 H 1.09003 * 109.47314 * 59.99610 * 4 3 2 39 39 H 1.09004 * 109.47259 * 299.99548 * 4 3 2 40 40 H 1.00893 * 111.00026 * 303.95479 * 5 4 3 41 41 H 1.09004 * 109.47210 * 60.00310 * 6 5 4 42 42 H 1.08997 * 109.47605 * 300.00670 * 6 5 4 43 43 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 44 44 H 0.97000 * 120.00310 * 180.02562 * 13 12 10 45 45 H 1.09007 * 110.40213 * 48.50890 * 28 26 24 46 46 H 1.08996 * 110.40495 * 170.92429 * 28 26 24 47 47 H 1.09002 * 110.40734 * 241.20971 * 29 28 26 48 48 H 1.09006 * 110.40283 * 118.78864 * 29 28 26 49 49 H 1.09001 * 112.03320 * 170.31078 * 32 30 29 50 50 H 1.09006 * 112.02354 * 296.75373 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1875 2.9824 1.4425 6 6 3.4502 3.4385 2.8139 7 6 4.2033 4.7432 2.7738 8 8 4.4924 5.2440 1.7075 9 7 4.5558 5.3535 3.9227 10 6 5.2414 6.5401 3.8861 11 1 5.4987 6.9861 2.9367 12 6 5.6043 7.1697 5.0705 13 7 5.2907 6.6273 6.2256 14 14 6.5378 8.7868 5.0207 15 1 6.7665 9.1831 3.6079 16 1 5.7442 9.8378 5.7068 17 1 7.8445 8.6255 5.7076 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0001 20 6 1.3854 -2.4723 0.0005 21 1 0.4500 -2.4743 -0.5590 22 6 2.2091 -3.7617 0.0005 23 1 3.2938 -3.7152 -0.0958 24 6 1.4467 -3.3215 1.2718 25 1 1.9548 -2.9403 2.1575 26 6 0.3385 -4.4019 1.4606 27 1 -0.5096 -4.1252 2.0870 28 6 1.1133 -5.6850 1.8902 29 6 1.8755 -6.1252 0.6195 30 6 1.4900 -5.0662 -0.4580 31 1 1.6419 -5.3528 -1.4986 32 6 0.0127 -4.7466 -0.0352 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8899 0.5139 35 1 -0.3633 0.8899 0.5139 36 1 1.6084 2.0284 -0.5138 37 1 3.1499 1.1385 -0.5137 38 1 3.0416 0.9507 1.9563 39 1 1.5001 1.8407 1.9564 40 1 4.0449 2.9045 0.9165 41 1 4.0457 2.6908 3.3378 42 1 2.5046 3.5812 3.3369 43 1 4.3212 4.9550 4.7753 44 1 5.5437 7.0669 7.0525 45 1 1.8139 -5.4549 2.6930 46 1 0.4167 -6.4624 2.2038 47 1 1.5536 -7.1190 0.3083 48 1 2.9508 -6.1115 0.7976 49 1 -0.3904 -3.8890 -0.5740 50 1 -0.6353 -5.6187 -0.1229 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713669053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:46 Heat of formation + Delta-G solvation = -27.260708 kcal Electronic energy + Delta-G solvation = -28267.399990 eV Core-core repulsion = 24295.597238 eV Total energy + Delta-G solvation = -3971.802753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80484 -39.63931 -38.25291 -36.38840 -34.95088 -33.94987 -33.74441 -31.22013 -29.96153 -29.39227 -28.49875 -27.04701 -26.34565 -24.73150 -23.54423 -22.15117 -21.99388 -20.30614 -19.24479 -19.04173 -18.81897 -17.88749 -17.73389 -16.49774 -16.39304 -16.23005 -15.85365 -15.44340 -15.27225 -14.73402 -14.48572 -14.00905 -13.73831 -13.59050 -13.36873 -13.23271 -13.14615 -13.03272 -12.74149 -12.55098 -12.19346 -12.03336 -11.95424 -11.88704 -11.70135 -11.59976 -11.50110 -11.47868 -11.32702 -11.11377 -10.96658 -10.74116 -10.32501 -10.24972 -10.20524 -10.02298 -9.93035 -9.49997 -8.92989 -8.43238 -8.05807 -7.93842 -6.39708 -3.80385 2.22562 2.65154 3.18097 3.28409 3.36084 3.42716 3.78575 3.93345 4.01250 4.05868 4.15566 4.42056 4.50136 4.54697 4.59855 4.69987 4.78285 4.86089 4.88369 4.96244 4.98365 5.02525 5.05860 5.14049 5.20990 5.25495 5.30075 5.32407 5.40040 5.49051 5.52797 5.55150 5.61411 5.68163 5.68845 5.77333 5.79678 5.85858 5.89459 5.92310 5.95860 6.01263 6.24469 6.33331 7.14164 7.20209 7.57527 7.66090 7.98070 8.08741 8.63542 9.20047 9.56570 10.08057 10.78196 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.001707 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.126772 B =16396.762894 C =16875.828525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.117 3.883 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.442 3.558 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.543 3.457 19 O -0.535 6.535 20 C -0.167 4.167 21 H 0.125 0.875 22 C -0.128 4.128 23 H 0.124 0.876 24 C -0.133 4.133 25 H 0.116 0.884 26 C -0.072 4.072 27 H 0.102 0.898 28 C -0.118 4.118 29 C -0.117 4.117 30 C -0.074 4.074 31 H 0.102 0.898 32 C -0.138 4.138 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.351 0.649 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -26.944 -9.748 32.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.006 4.006 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.331 3.669 19 O -0.412 6.412 20 C -0.188 4.188 21 H 0.143 0.857 22 C -0.146 4.146 23 H 0.142 0.858 24 C -0.152 4.152 25 H 0.134 0.866 26 C -0.090 4.090 27 H 0.121 0.879 28 C -0.156 4.156 29 C -0.155 4.155 30 C -0.093 4.093 31 H 0.120 0.880 32 C -0.176 4.176 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.718 -26.145 -10.339 31.734 hybrid contribution 0.917 0.134 1.027 1.383 sum -13.801 -26.011 -9.312 30.883 Atomic orbital electron populations 1.21844 0.79226 1.03583 1.01924 1.47718 1.07197 1.05875 1.73682 1.21426 0.98264 0.83747 0.97137 1.22248 0.98990 0.90530 0.96615 1.60015 1.28382 1.27857 1.13716 1.21654 1.00214 0.96104 0.90058 1.19798 0.85134 0.87313 0.85045 1.90522 1.59241 1.67246 1.29642 1.41866 1.49986 1.21500 1.06758 1.19766 1.30767 0.97676 0.94582 0.87834 1.25272 0.98227 0.99905 0.94642 1.69623 1.47219 1.40062 0.97469 0.85789 0.78807 0.81099 0.78580 1.19205 1.20758 1.20782 1.19658 0.87280 0.84305 0.75668 1.90715 1.13889 1.87221 1.49346 1.22350 1.02146 0.90182 1.04119 0.85718 1.23590 0.98914 0.91203 1.00935 0.85837 1.23594 1.01205 0.98652 0.91755 0.86584 1.23171 0.95878 0.93395 0.96599 0.87949 1.22536 0.98880 0.96401 0.97749 1.22520 1.00504 0.97872 0.94577 1.23185 0.94253 0.93268 0.98556 0.88023 1.23768 0.96532 1.01428 0.95827 0.92469 0.90821 0.90526 0.89252 0.89750 0.95231 0.91142 0.82968 0.93846 0.89633 0.77463 0.91946 0.91412 0.91466 0.91508 0.91388 0.90668 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.01 59.85 0.60 1.11 16 2 N -0.61 -6.35 2.87 -181.58 -0.52 -6.87 16 3 C 0.12 1.42 5.67 -4.04 -0.02 1.39 16 4 C 0.05 0.64 6.01 -3.82 -0.02 0.62 16 5 N -0.67 -11.44 6.12 -115.05 -0.70 -12.15 16 6 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 7 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 8 O -0.58 -16.27 15.78 5.55 0.09 -16.18 16 9 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 10 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 14 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.54 6.50 7.45 -10.98 -0.08 6.42 16 19 O -0.54 -8.61 15.93 5.56 0.09 -8.53 16 20 C -0.17 -1.43 3.99 -91.77 -0.37 -1.80 16 21 H 0.13 0.82 5.14 -51.93 -0.27 0.55 16 22 C -0.13 -1.09 5.93 -88.24 -0.52 -1.61 16 23 H 0.12 1.29 7.83 -51.93 -0.41 0.89 16 24 C -0.13 -1.05 6.20 -88.20 -0.55 -1.60 16 25 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.07 -0.41 5.18 -85.38 -0.44 -0.86 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 C -0.12 -0.66 6.21 -24.34 -0.15 -0.81 16 29 C -0.12 -0.67 6.21 -24.34 -0.15 -0.82 16 30 C -0.07 -0.46 5.17 -85.39 -0.44 -0.90 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 C -0.14 -0.72 6.23 -22.47 -0.14 -0.86 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.38 6.65 -51.93 -0.35 0.04 16 35 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.35 6.33 8.43 -39.30 -0.33 6.00 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.07 0.42 8.04 -51.92 -0.42 0.00 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.43 8.04 -51.93 -0.42 0.01 16 49 H 0.07 0.37 5.91 -51.93 -0.31 0.06 16 50 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -33.92 399.88 -10.23 -44.15 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.20 Total: 12.41 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.65 Total: 3.76 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.56 Total: -58.00 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.18 Total: -24.71 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.92 -10.23 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713669053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.890 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds