Wall clock time and date at job start Tue Mar 31 2020 18:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99585 * 2 1 4 4 C 1.52998 * 109.46852 * 90.00374 * 3 2 1 5 5 N 1.46907 * 109.47021 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99969 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47051 * 180.02562 * 6 5 4 8 8 O 1.21292 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99722 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99996 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99860 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47317 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47081 * 120.00006 * 14 12 10 17 17 H 1.48501 * 109.47213 * 240.00378 * 14 12 10 18 18 C 1.34773 * 120.00105 * 179.97438 * 2 1 3 19 19 O 1.21277 * 120.00288 * 179.97438 * 18 2 1 20 20 C 1.50705 * 119.99852 * 0.02562 * 18 2 1 21 21 H 1.08999 * 115.51152 * 34.64310 * 20 18 2 22 22 C 1.53002 * 117.42752 * 179.97438 * 20 18 2 23 23 H 1.08992 * 119.98890 * 354.14075 * 22 20 18 24 24 C 1.53006 * 117.42734 * 249.37982 * 20 18 2 25 25 H 1.08997 * 119.98438 * 4.74312 * 24 20 18 26 26 C 1.55921 * 117.17558 * 160.67005 * 24 20 18 27 27 H 1.09005 * 116.52784 * 262.67955 * 26 24 20 28 28 C 1.55920 * 104.50083 * 133.34792 * 26 24 20 29 29 C 1.54577 * 104.64832 * 289.71876 * 28 26 24 30 30 C 1.55922 * 104.64141 * 0.02562 * 29 28 26 31 31 H 1.08999 * 116.53222 * 199.60337 * 30 29 28 32 32 C 1.56950 * 100.65239 * 326.21831 * 30 29 28 33 33 H 1.08993 * 109.47331 * 90.00006 * 1 2 3 34 34 H 1.08999 * 109.47100 * 210.00287 * 1 2 3 35 35 H 1.08999 * 109.47208 * 329.99756 * 1 2 3 36 36 H 1.08990 * 109.47256 * 330.00072 * 3 2 1 37 37 H 1.08996 * 109.46789 * 209.99529 * 3 2 1 38 38 H 1.09003 * 109.47314 * 59.99610 * 4 3 2 39 39 H 1.09004 * 109.47259 * 299.99548 * 4 3 2 40 40 H 1.00893 * 111.00026 * 303.95479 * 5 4 3 41 41 H 1.09004 * 109.47210 * 60.00310 * 6 5 4 42 42 H 1.08997 * 109.47605 * 300.00670 * 6 5 4 43 43 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 44 44 H 0.97000 * 120.00310 * 180.02562 * 13 12 10 45 45 H 1.09007 * 110.40213 * 48.50890 * 28 26 24 46 46 H 1.08996 * 110.40495 * 170.92429 * 28 26 24 47 47 H 1.09002 * 110.40734 * 241.20971 * 29 28 26 48 48 H 1.09006 * 110.40283 * 118.78864 * 29 28 26 49 49 H 1.09001 * 112.03320 * 170.31078 * 32 30 29 50 50 H 1.09006 * 112.02354 * 296.75373 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1875 2.9824 1.4425 6 6 3.4502 3.4385 2.8139 7 6 4.2033 4.7432 2.7738 8 8 4.4924 5.2440 1.7075 9 7 4.5558 5.3535 3.9227 10 6 5.2414 6.5401 3.8861 11 1 5.4987 6.9861 2.9367 12 6 5.6043 7.1697 5.0705 13 7 5.2907 6.6273 6.2256 14 14 6.5378 8.7868 5.0207 15 1 6.7665 9.1831 3.6079 16 1 5.7442 9.8378 5.7068 17 1 7.8445 8.6255 5.7076 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0001 20 6 1.3854 -2.4723 0.0005 21 1 0.4500 -2.4743 -0.5590 22 6 2.2091 -3.7617 0.0005 23 1 3.2938 -3.7152 -0.0958 24 6 1.4467 -3.3215 1.2718 25 1 1.9548 -2.9403 2.1575 26 6 0.3385 -4.4019 1.4606 27 1 -0.5096 -4.1252 2.0870 28 6 1.1133 -5.6850 1.8902 29 6 1.8755 -6.1252 0.6195 30 6 1.4900 -5.0662 -0.4580 31 1 1.6419 -5.3528 -1.4986 32 6 0.0127 -4.7466 -0.0352 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8899 0.5139 35 1 -0.3633 0.8899 0.5139 36 1 1.6084 2.0284 -0.5138 37 1 3.1499 1.1385 -0.5137 38 1 3.0416 0.9507 1.9563 39 1 1.5001 1.8407 1.9564 40 1 4.0449 2.9045 0.9165 41 1 4.0457 2.6908 3.3378 42 1 2.5046 3.5812 3.3369 43 1 4.3212 4.9550 4.7753 44 1 5.5437 7.0669 7.0525 45 1 1.8139 -5.4549 2.6930 46 1 0.4167 -6.4624 2.2038 47 1 1.5536 -7.1190 0.3083 48 1 2.9508 -6.1115 0.7976 49 1 -0.3904 -3.8890 -0.5740 50 1 -0.6353 -5.6187 -0.1229 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713669053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:45 Heat of formation + Delta-G solvation = -50.223512 kcal Electronic energy + Delta-G solvation = -28268.395732 eV Core-core repulsion = 24295.597238 eV Total energy + Delta-G solvation = -3972.798494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40974 -40.53018 -40.15230 -37.55994 -36.27281 -35.73786 -34.52498 -33.30797 -31.14644 -29.87029 -28.95173 -28.16961 -27.46567 -26.19544 -24.78399 -23.13155 -22.60836 -21.26074 -20.83592 -19.94928 -19.60069 -19.52057 -18.53560 -17.94300 -17.35244 -17.14929 -16.87185 -16.54153 -16.42599 -16.11891 -15.96285 -15.49543 -15.27503 -14.87459 -14.43446 -14.13986 -13.89825 -13.87313 -13.74805 -13.56578 -13.40061 -13.24517 -13.11175 -12.92801 -12.77906 -12.45092 -12.43679 -12.42766 -12.17644 -12.14929 -12.12292 -12.00899 -11.81433 -11.54242 -11.23010 -10.96717 -10.73985 -10.58743 -10.43019 -10.04967 -9.77030 -9.49052 -8.49289 -5.98470 1.34629 1.35321 1.40717 1.55383 1.81514 2.00299 2.28020 2.74290 2.90223 3.17349 3.22480 3.50197 3.51450 3.56662 3.79832 3.94225 3.96420 4.01597 4.08024 4.15092 4.24676 4.26938 4.33372 4.42393 4.43938 4.44219 4.48014 4.52288 4.57509 4.68291 4.68785 4.74739 4.86953 4.90363 4.96321 5.02321 5.06414 5.20336 5.23221 5.23583 5.24833 5.36788 5.38727 5.43475 5.50173 5.79011 6.02229 6.22005 6.31777 6.56338 7.08154 7.09243 7.51699 8.06762 8.68402 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.001707 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.126772 B =16396.762894 C =16875.828525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.122 3.878 4 C 0.057 3.943 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.996 3.004 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.271 1.271 18 C 0.533 3.467 19 O -0.589 6.589 20 C -0.160 4.160 21 H 0.154 0.846 22 C -0.143 4.143 23 H 0.092 0.908 24 C -0.130 4.130 25 H 0.096 0.904 26 C -0.064 4.064 27 H 0.120 0.880 28 C -0.120 4.120 29 C -0.119 4.119 30 C -0.072 4.072 31 H 0.109 0.891 32 C -0.130 4.130 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.089 0.911 40 H 0.343 0.657 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.751 -27.953 -9.489 34.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C -0.002 4.002 4 C -0.073 4.073 5 N -0.307 5.307 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.196 1.196 18 C 0.323 3.677 19 O -0.470 6.470 20 C -0.180 4.180 21 H 0.171 0.829 22 C -0.161 4.161 23 H 0.110 0.890 24 C -0.148 4.148 25 H 0.114 0.886 26 C -0.082 4.082 27 H 0.138 0.862 28 C -0.157 4.157 29 C -0.156 4.156 30 C -0.090 4.090 31 H 0.127 0.873 32 C -0.167 4.167 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.108 0.892 40 H 0.161 0.839 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.473 -27.175 -10.057 33.837 hybrid contribution 1.776 0.425 0.949 2.058 sum -15.697 -26.750 -9.108 32.325 Atomic orbital electron populations 1.22151 0.76378 1.04998 1.03627 1.47826 1.08860 1.04690 1.72528 1.21263 0.97914 0.85045 0.95943 1.22243 0.98875 0.88438 0.97749 1.60048 1.28129 1.29835 1.12683 1.21528 1.00597 0.93076 0.91430 1.20783 0.84227 0.88590 0.83913 1.90489 1.60635 1.68776 1.30951 1.41925 1.50220 1.21272 1.07471 1.19731 1.33106 0.99393 0.94263 0.90250 1.26087 0.98409 1.02928 0.93923 1.69680 1.47231 1.41223 0.97956 0.84832 0.77903 0.77053 0.78297 1.19794 1.19389 1.19592 1.20338 0.86919 0.85782 0.74704 1.90688 1.16353 1.88047 1.51909 1.22331 1.02535 0.88202 1.04968 0.82885 1.23600 0.97709 0.92646 1.02191 0.88995 1.23640 1.01903 0.98644 0.90657 0.88580 1.23243 0.95379 0.92023 0.97602 0.86239 1.22565 0.98978 0.96937 0.97248 1.22544 0.99754 0.98594 0.94738 1.23239 0.94966 0.91753 0.99011 0.87306 1.23770 0.95603 1.02436 0.94914 0.90597 0.88954 0.89634 0.87748 0.92170 0.96646 0.89223 0.83927 0.92311 0.87223 0.76949 0.91222 0.92652 0.89817 0.90003 0.92903 0.89844 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.01 127.77 1.28 1.99 16 2 N -0.61 -12.00 2.87 -846.78 -2.43 -14.43 16 3 C 0.12 2.92 5.67 86.38 0.49 3.41 16 4 C 0.06 1.53 6.01 86.30 0.52 2.04 16 5 N -0.67 -23.06 6.12 -517.92 -3.17 -26.23 16 6 C 0.07 2.43 6.17 85.56 0.53 2.96 16 7 C 0.44 21.72 7.82 87.66 0.69 22.41 16 8 O -0.62 -35.74 15.78 -3.07 -0.05 -35.78 16 9 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 10 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 11 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 12 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 13 N -0.92 -50.43 13.05 21.66 0.28 -50.14 16 14 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 C 0.53 12.89 7.45 87.66 0.65 13.55 16 19 O -0.59 -20.23 15.93 -3.02 -0.05 -20.28 16 20 C -0.16 -2.58 3.99 -11.54 -0.05 -2.63 16 21 H 0.15 1.55 5.14 -2.39 -0.01 1.53 16 22 C -0.14 -2.47 5.93 -9.25 -0.05 -2.52 16 23 H 0.09 2.16 7.83 -2.39 -0.02 2.14 16 24 C -0.13 -1.97 6.20 -9.22 -0.06 -2.03 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 C -0.06 -0.58 5.18 -7.40 -0.04 -0.62 16 27 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 28 C -0.12 -1.14 6.21 32.14 0.20 -0.94 16 29 C -0.12 -1.23 6.21 32.14 0.20 -1.03 16 30 C -0.07 -0.78 5.17 -7.41 -0.04 -0.82 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 32 C -0.13 -0.92 6.23 33.35 0.21 -0.71 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.62 6.65 -2.39 -0.02 0.61 16 35 H 0.08 0.76 8.07 -2.39 -0.02 0.74 16 36 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 37 H 0.06 1.74 7.42 -2.39 -0.02 1.73 16 38 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.34 12.71 8.43 -89.70 -0.76 11.96 16 41 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 44 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 45 H 0.05 0.66 8.04 -2.38 -0.02 0.64 16 46 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 0.69 8.04 -2.38 -0.02 0.67 16 49 H 0.08 0.47 5.91 -2.39 -0.01 0.46 16 50 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -76.18 399.88 0.26 -75.92 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.53 Total: 41.13 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 5.81 Total: 16.06 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.94 Total: -122.73 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.10 Total: -56.06 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -76.18 0.26 -75.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713669053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.695 kcal (2) G-P(sol) polarization free energy of solvation -76.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds