Wall clock time and date at job start Tue Mar 31 2020 18:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99840 * 2 1 4 4 C 1.50699 * 109.47234 * 66.04172 * 3 2 1 5 5 O 1.21297 * 120.00198 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.37099 * 119.99879 * 180.02562 * 6 4 3 8 8 H 1.07997 * 120.00351 * 359.97438 * 7 6 4 9 9 C 1.38949 * 119.99905 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00266 * 179.72261 * 9 7 6 11 11 Si 1.86798 * 119.99868 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47055 * 269.72221 * 11 9 7 13 13 H 1.48503 * 109.47388 * 29.72144 * 11 9 7 14 14 H 1.48497 * 109.47233 * 149.72609 * 11 9 7 15 15 C 1.46892 * 111.00311 * 236.04362 * 2 1 3 16 16 C 1.53002 * 109.46948 * 199.87654 * 15 2 1 17 17 H 1.08994 * 110.88686 * 307.93875 * 16 15 2 18 18 C 1.55160 * 111.00254 * 184.05650 * 16 15 2 19 19 C 1.54326 * 102.93971 * 206.42366 * 18 16 15 20 20 N 1.47023 * 107.27414 * 22.19344 * 19 18 16 21 21 C 1.34775 * 125.64593 * 181.09796 * 20 19 18 22 22 O 1.21613 * 119.99381 * 179.97438 * 21 20 19 23 23 C 1.47098 * 120.00315 * 359.97438 * 21 20 19 24 24 C 1.32992 * 119.99858 * 180.02562 * 23 21 20 25 25 C 1.51403 * 136.31712 * 359.62171 * 24 23 21 26 26 C 1.53378 * 87.51782 * 206.06199 * 25 24 23 27 27 C 1.51405 * 136.31648 * 180.02562 * 24 23 21 28 28 C 1.47465 * 108.71956 * 1.02467 * 20 19 18 29 29 H 1.09000 * 109.47342 * 54.58342 * 1 2 3 30 30 H 1.08999 * 109.47055 * 174.57955 * 1 2 3 31 31 H 1.08994 * 109.47747 * 294.57664 * 1 2 3 32 32 H 1.09001 * 109.46609 * 306.04552 * 3 2 1 33 33 H 1.09000 * 109.47272 * 186.04210 * 3 2 1 34 34 H 0.97001 * 119.99966 * 359.97438 * 6 4 3 35 35 H 0.96994 * 120.00446 * 180.27382 * 10 9 7 36 36 H 1.09004 * 109.46916 * 319.87311 * 15 2 1 37 37 H 1.08999 * 109.47220 * 79.87315 * 15 2 1 38 38 H 1.08999 * 110.72116 * 324.78388 * 18 16 15 39 39 H 1.09000 * 110.71861 * 87.88365 * 18 16 15 40 40 H 1.09008 * 109.88205 * 141.61124 * 19 18 16 41 41 H 1.09002 * 109.88246 * 262.77331 * 19 18 16 42 42 H 1.08003 * 120.00000 * 359.97438 * 23 21 20 43 43 H 1.09000 * 113.55998 * 320.64259 * 25 24 23 44 44 H 1.08998 * 113.55978 * 91.37722 * 25 24 23 45 45 H 1.09004 * 113.96953 * 220.29285 * 26 25 24 46 46 H 1.09008 * 113.71293 * 88.81002 * 26 25 24 47 47 H 1.09003 * 113.55937 * 268.62576 * 27 24 23 48 48 H 1.09008 * 113.56094 * 39.27850 * 27 24 23 49 49 H 1.09001 * 110.40525 * 217.08425 * 28 20 19 50 50 H 1.09001 * 110.34769 * 94.74658 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0044 1.4457 2.1407 6 7 2.0178 3.3203 1.5232 7 6 1.6920 3.9349 2.7046 8 1 1.1297 3.3991 3.4550 9 6 2.0853 5.2472 2.9366 10 7 1.7684 5.8382 4.0667 11 14 3.0573 6.1743 1.6385 12 1 4.5101 5.9669 1.8660 13 1 2.6903 5.6696 0.2909 14 1 2.7444 7.6232 1.7266 15 6 1.9955 -0.7660 -1.1375 16 6 3.4447 -1.1671 -0.8551 17 1 4.0393 -0.2996 -0.5690 18 6 4.0694 -1.8912 -2.0769 19 6 5.1572 -2.7775 -1.4343 20 7 4.7867 -2.9705 -0.0247 21 6 5.4937 -3.6703 0.8845 22 8 5.0899 -3.7635 2.0279 23 6 6.7537 -4.3213 0.4940 24 6 7.4511 -5.0122 1.3912 25 6 7.3110 -5.3547 2.8594 26 6 8.8379 -5.4926 2.9043 27 6 8.7431 -5.8014 1.4022 28 6 3.5142 -2.2703 0.2302 29 1 -0.3634 0.5955 -0.8375 30 1 -0.3633 -1.0231 -0.0971 31 1 -0.3634 0.4274 0.9345 32 1 1.5610 1.9273 -0.8309 33 1 3.0797 1.3445 -0.1082 34 1 2.5232 3.8015 0.8494 35 1 2.0395 6.7555 4.2271 36 1 1.3921 -1.6621 -1.2825 37 1 1.9570 -0.1525 -2.0376 38 1 3.3242 -2.5030 -2.5852 39 1 4.5116 -1.1723 -2.7666 40 1 5.1981 -3.7412 -1.9422 41 1 6.1255 -2.2810 -1.4985 42 1 7.1120 -4.2388 -0.5215 43 1 6.9315 -4.5313 3.4645 44 1 6.7834 -6.2912 3.0399 45 1 9.1892 -6.3316 3.5051 46 1 9.3559 -4.5604 3.1302 47 1 8.6086 -6.8605 1.1826 48 1 9.5375 -5.3449 0.8114 49 1 3.5185 -1.8241 1.2248 50 1 2.6753 -2.9584 0.1259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713747776.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:54 Heat of formation + Delta-G solvation = -37.787991 kcal Electronic energy + Delta-G solvation = -28711.744193 eV Core-core repulsion = 24739.484943 eV Total energy + Delta-G solvation = -3972.259250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20550 -40.50529 -39.64986 -38.64372 -37.35574 -35.91129 -33.76233 -33.38283 -31.65619 -30.32427 -29.65681 -27.62660 -26.70300 -26.51042 -25.02048 -23.57172 -22.90432 -21.46956 -21.08690 -20.77815 -20.10667 -18.79454 -18.20434 -17.98474 -17.15663 -16.86230 -16.63456 -16.53803 -16.27310 -16.00975 -15.54864 -15.46562 -15.23635 -15.08438 -14.84110 -14.46086 -14.28302 -13.95525 -13.85965 -13.62304 -13.36108 -13.31757 -13.12774 -12.92614 -12.77019 -12.70827 -12.63418 -12.44989 -12.37729 -12.08048 -11.97764 -11.89343 -11.78751 -11.52040 -11.50110 -11.42380 -10.73797 -10.35845 -10.25122 -10.24159 -9.58059 -9.13462 -8.41799 -6.02660 0.34159 1.27963 1.34786 1.43322 1.96505 2.01257 2.22382 2.27348 2.64999 3.13594 3.19163 3.31147 3.54540 3.67179 3.70514 3.81353 3.87582 4.10255 4.13750 4.23235 4.31430 4.34993 4.38473 4.47627 4.51076 4.56453 4.58644 4.67792 4.71680 4.73592 4.79373 4.81679 4.83758 4.89536 4.95054 5.01587 5.03181 5.14280 5.21553 5.24553 5.33007 5.34283 5.44759 5.52831 5.66237 5.90697 6.04185 6.26407 6.57031 6.60034 6.88766 7.17286 7.39909 7.98804 8.76256 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002453 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.796212 B =11412.926642 C =12654.599916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.549 5.549 3 C 0.056 3.944 4 C 0.449 3.551 5 O -0.607 6.607 6 N -0.594 5.594 7 C -0.327 4.327 8 H 0.052 0.948 9 C -0.018 4.018 10 N -0.937 5.937 11 Si 0.967 3.033 12 H -0.258 1.258 13 H -0.229 1.229 14 H -0.274 1.274 15 C 0.070 3.930 16 C -0.091 4.091 17 H 0.077 0.923 18 C -0.113 4.113 19 C 0.095 3.905 20 N -0.621 5.621 21 C 0.547 3.453 22 O -0.599 6.599 23 C -0.205 4.205 24 C -0.071 4.071 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.089 4.089 28 C 0.120 3.880 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.389 0.611 35 H 0.279 0.721 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.166 0.834 43 H 0.050 0.950 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.122 0.878 48 H 0.098 0.902 49 H 0.034 0.966 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.475 -21.248 -22.734 34.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.273 5.273 3 C -0.075 4.075 4 C 0.236 3.764 5 O -0.491 6.491 6 N -0.236 5.236 7 C -0.456 4.456 8 H 0.070 0.930 9 C -0.217 4.217 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.183 1.183 13 H -0.152 1.152 14 H -0.199 1.199 15 C -0.057 4.057 16 C -0.111 4.111 17 H 0.095 0.905 18 C -0.151 4.151 19 C -0.027 4.027 20 N -0.353 5.353 21 C 0.340 3.660 22 O -0.482 6.482 23 C -0.225 4.225 24 C -0.073 4.073 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.125 4.125 28 C -0.002 4.002 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.183 0.817 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.140 0.860 48 H 0.116 0.884 49 H 0.053 0.947 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.022 -21.804 -20.981 33.783 hybrid contribution -0.465 1.544 0.095 1.616 sum 14.557 -20.260 -20.886 32.536 Atomic orbital electron populations 1.22389 0.86656 1.02046 1.00808 1.61431 1.08803 1.12359 1.44732 1.21870 1.02566 0.89791 0.93271 1.21042 0.82875 0.81734 0.90707 1.90525 1.44170 1.65160 1.49251 1.42045 1.52010 1.12659 1.16885 1.18980 1.34759 0.97109 0.94785 0.93020 1.26160 0.98732 0.96973 0.99789 1.69811 1.47328 1.14242 1.26383 0.85341 0.78861 0.78116 0.79034 1.18287 1.15171 1.19899 1.22174 0.94173 0.98323 0.91043 1.22346 0.96814 0.96775 0.95139 0.90478 1.22709 0.97597 0.98708 0.96041 1.22370 0.99772 1.01516 0.79025 1.48587 1.23632 1.51010 1.12068 1.18863 0.85136 0.78349 0.83686 1.90778 1.72231 1.63628 1.21532 1.21670 0.94556 1.05149 1.01116 1.23977 0.95860 0.91932 0.95543 1.22367 0.98326 1.01882 0.93626 1.22723 0.94137 1.03180 0.97206 1.22357 0.92660 1.00765 0.96724 1.22088 0.85346 0.93714 0.99094 0.94581 0.90228 0.93471 0.89964 0.86783 0.77531 0.91178 0.89161 0.91111 0.88604 0.87071 0.89009 0.89864 0.81677 0.93156 0.88103 0.88461 0.89983 0.86014 0.88404 0.94748 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.19 127.69 1.17 2.05 16 2 N -0.55 -16.38 4.36 -927.08 -4.04 -20.42 16 3 C 0.06 1.75 5.27 85.56 0.45 2.20 16 4 C 0.45 21.02 7.54 87.66 0.66 21.68 16 5 O -0.61 -35.03 13.88 -3.08 -0.04 -35.08 16 6 N -0.59 -28.91 5.09 -306.98 -1.56 -30.47 16 7 C -0.33 -19.78 10.16 84.04 0.85 -18.93 16 8 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 9 C -0.02 -1.05 5.50 84.93 0.47 -0.58 16 10 N -0.94 -57.99 13.96 21.66 0.30 -57.69 16 11 Si 0.97 39.55 27.74 68.60 1.90 41.45 16 12 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 13 H -0.23 -7.76 6.51 99.48 0.65 -7.11 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 15 C 0.07 1.31 4.46 86.31 0.38 1.69 16 16 C -0.09 -1.68 3.09 -9.40 -0.03 -1.71 16 17 H 0.08 1.61 6.72 -2.39 -0.02 1.59 16 18 C -0.11 -1.05 6.42 31.78 0.20 -0.85 16 19 C 0.09 1.14 6.06 86.73 0.53 1.66 16 20 N -0.62 -14.65 3.33 -815.94 -2.71 -17.36 16 21 C 0.55 15.77 7.80 86.57 0.67 16.45 16 22 O -0.60 -23.62 15.41 -4.07 -0.06 -23.68 16 23 C -0.20 -4.04 9.54 23.43 0.22 -3.81 16 24 C -0.07 -1.33 6.93 -17.17 -0.12 -1.45 16 25 C -0.13 -2.60 6.99 30.06 0.21 -2.39 16 26 C -0.14 -1.76 8.17 30.93 0.25 -1.51 16 27 C -0.09 -0.90 7.95 30.15 0.24 -0.66 16 28 C 0.12 3.23 6.31 86.85 0.55 3.78 16 29 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 30 H 0.08 2.02 7.84 -2.39 -0.02 2.01 16 31 H 0.05 1.91 5.99 -2.39 -0.01 1.90 16 32 H 0.08 2.06 8.07 -2.39 -0.02 2.04 16 33 H 0.11 2.99 6.60 -2.39 -0.02 2.98 16 34 H 0.39 15.57 5.76 -92.71 -0.53 15.03 16 35 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16 37 H 0.07 0.96 8.00 -2.39 -0.02 0.94 16 38 H 0.10 0.63 8.04 -2.39 -0.02 0.61 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.17 1.92 7.38 -2.91 -0.02 1.90 16 43 H 0.05 1.42 7.49 -2.39 -0.02 1.40 16 44 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.03 1.27 8.04 -2.39 -0.02 1.25 16 50 H 0.06 1.69 7.92 -2.39 -0.02 1.67 16 Total: -1.00 -91.61 400.20 0.85 -90.77 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.34 Total: 34.86 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.72 Total: 17.61 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -8.02 Total: -125.94 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -0.11 Total: -58.76 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.90 Total: 41.45 kcal Total: -91.61 0.85 -90.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713747776.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.979 kcal (2) G-P(sol) polarization free energy of solvation -91.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds