Wall clock time and date at job start Tue Mar 31 2020 18:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00042 * 2 1 4 4 C 1.50697 * 109.47170 * 90.00455 * 3 2 1 5 5 O 1.21284 * 119.99864 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00144 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00189 * 180.02562 * 6 4 3 8 8 C 1.53144 * 109.43798 * 119.85943 * 7 6 4 9 9 C 1.53707 * 108.87966 * 66.17635 * 8 7 6 10 10 H 1.08999 * 112.09765 * 187.61596 * 9 8 7 11 11 C 1.54613 * 107.82919 * 312.22623 * 9 8 7 12 12 C 1.54830 * 104.64683 * 88.55057 * 11 9 8 13 13 C 1.54606 * 104.65593 * 0.02562 * 12 11 9 14 14 H 1.08995 * 112.69059 * 147.18987 * 13 12 11 15 15 C 1.53150 * 109.43172 * 240.08165 * 7 6 4 16 16 N 1.48284 * 107.27337 * 64.00488 * 9 8 7 17 17 C 1.36943 * 128.20936 * 107.40203 * 16 9 8 18 18 H 1.07995 * 120.00205 * 164.80809 * 17 16 9 19 19 C 1.38815 * 119.99557 * 344.80414 * 17 16 9 20 20 N 1.31616 * 120.00360 * 351.54851 * 19 17 16 21 21 Si 1.86797 * 119.99792 * 171.54620 * 19 17 16 22 22 H 1.48498 * 109.47554 * 180.02562 * 21 19 17 23 23 H 1.48508 * 109.47278 * 300.00433 * 21 19 17 24 24 H 1.48501 * 109.47261 * 59.99868 * 21 19 17 25 25 C 1.34775 * 120.00145 * 180.02562 * 2 1 3 26 26 O 1.21281 * 120.00385 * 180.02562 * 25 2 1 27 27 C 1.50708 * 119.99775 * 359.97438 * 25 2 1 28 28 C 1.53005 * 117.49781 * 248.62390 * 27 25 2 29 29 C 1.52999 * 117.49758 * 180.02562 * 27 25 2 30 30 H 1.08993 * 109.47423 * 89.99576 * 1 2 3 31 31 H 1.08997 * 109.47293 * 210.00209 * 1 2 3 32 32 H 1.09009 * 109.46637 * 329.99801 * 1 2 3 33 33 H 1.09000 * 109.47131 * 329.99754 * 3 2 1 34 34 H 1.09005 * 109.47322 * 210.00254 * 3 2 1 35 35 H 0.97004 * 120.00320 * 359.97438 * 6 4 3 36 36 H 1.09001 * 109.43451 * 359.94335 * 7 6 4 37 37 H 1.08996 * 109.56569 * 306.35757 * 8 7 6 38 38 H 1.08999 * 109.67144 * 186.05430 * 8 7 6 39 39 H 1.08996 * 110.38003 * 207.48312 * 11 9 8 40 40 H 1.09000 * 110.38287 * 329.85192 * 11 9 8 41 41 H 1.08999 * 110.32897 * 241.26028 * 12 11 9 42 42 H 1.09000 * 110.61620 * 118.88256 * 12 11 9 43 43 H 1.08998 * 109.57362 * 53.64629 * 15 7 6 44 44 H 1.09005 * 109.56561 * 174.00298 * 15 7 6 45 45 H 0.96994 * 120.00131 * 179.97438 * 20 19 17 46 46 H 1.08998 * 115.54811 * 34.32551 * 27 25 2 47 47 H 1.09002 * 117.49705 * 0.02562 * 28 27 25 48 48 H 1.08997 * 117.49524 * 145.01761 * 28 27 25 49 49 H 1.09000 * 117.49375 * 214.97855 * 29 27 25 50 50 H 1.08994 * 117.49861 * 359.97132 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 8 2.0543 1.0213 2.3426 6 7 3.1109 2.8515 1.6671 7 6 3.3556 3.2741 3.0483 8 6 4.8642 3.3827 3.2883 9 6 5.4237 4.5264 2.4272 10 1 6.5127 4.5657 2.4550 11 6 4.8694 4.3548 0.9941 12 6 3.5275 5.1271 0.9983 13 6 3.4042 5.6893 2.4332 14 1 2.8913 6.6505 2.4655 15 6 2.6955 4.6348 3.2894 16 7 4.8049 5.7844 2.9100 17 6 5.3874 6.7929 3.6305 18 1 4.8999 7.7536 3.7064 19 6 6.6045 6.5802 4.2632 20 7 7.1179 5.3693 4.3125 21 14 7.5137 8.0127 5.0447 22 1 8.7790 7.5249 5.6500 23 1 7.8217 9.0290 4.0066 24 1 6.6635 8.6231 6.0981 25 6 2.1389 -1.1672 -0.0005 26 8 3.3517 -1.1672 -0.0001 27 6 1.3853 -2.4723 -0.0005 28 6 1.4610 -3.3318 1.2631 29 6 2.2074 -3.7627 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5139 33 1 1.6084 2.0284 -0.5139 34 1 3.1499 1.1384 -0.5139 35 1 3.4260 3.3974 0.9298 36 1 2.9314 2.5395 3.7329 37 1 5.3466 2.4460 3.0093 38 1 5.0542 3.5918 4.3410 39 1 5.5569 4.7869 0.2669 40 1 4.6989 3.3004 0.7767 41 1 2.7005 4.4504 0.7829 42 1 3.5505 5.9404 0.2729 43 1 1.6428 4.5844 3.0113 44 1 2.7843 4.9022 4.3424 45 1 7.9685 5.2208 4.7544 46 1 0.4467 -2.4732 -0.5547 47 1 2.0554 -2.9529 2.0945 48 1 0.5720 -3.8982 1.5404 49 1 1.8097 -4.6128 -0.5548 50 1 3.2932 -3.6676 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713971328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:42 Heat of formation + Delta-G solvation = 46.208944 kcal Electronic energy + Delta-G solvation = -30810.478938 eV Core-core repulsion = 26841.862068 eV Total energy + Delta-G solvation = -3968.616869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58570 -41.22554 -39.61286 -37.18823 -36.45300 -35.81300 -33.94537 -32.89823 -31.98728 -31.01485 -29.76859 -27.54293 -26.47534 -24.87911 -24.80660 -23.35474 -23.10085 -21.75230 -21.22200 -20.88442 -19.95278 -19.06359 -18.56987 -18.31066 -17.33397 -16.80576 -16.52705 -16.22801 -16.03888 -15.71160 -15.40190 -15.08575 -14.90151 -14.64047 -14.53652 -14.40167 -13.95087 -13.86216 -13.63922 -13.55372 -13.30508 -13.24790 -13.22022 -12.84729 -12.76717 -12.67314 -12.45388 -12.41412 -12.08917 -11.94656 -11.76430 -11.53792 -11.45332 -11.42598 -11.18391 -11.05090 -11.03353 -10.91630 -10.56553 -9.70281 -9.64074 -8.76119 -7.82652 -5.18596 1.37079 1.47372 1.48806 1.55110 1.66595 1.84389 2.48625 2.50995 2.93136 3.34557 3.51903 3.54310 3.81402 3.84908 3.91494 3.95906 3.98985 4.12017 4.17593 4.21188 4.26064 4.28873 4.31074 4.37873 4.41212 4.48418 4.69741 4.72105 4.76449 4.79459 4.87391 4.93286 4.96377 5.00866 5.01573 5.07375 5.10364 5.20784 5.25494 5.27881 5.36405 5.45056 5.55547 5.57611 5.77847 5.83176 6.27647 6.29181 6.60296 7.09126 7.09856 7.30553 7.76968 8.56470 9.27636 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.002761 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.393031 B =10139.768576 C =10544.976004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.596 5.596 3 C 0.094 3.906 4 C 0.477 3.523 5 O -0.587 6.587 6 N -0.724 5.724 7 C 0.156 3.844 8 C -0.114 4.114 9 C 0.174 3.826 10 H 0.070 0.930 11 C -0.163 4.163 12 C -0.145 4.145 13 C 0.141 3.859 14 H 0.077 0.923 15 C -0.127 4.127 16 N -0.603 5.603 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.061 4.061 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.300 1.300 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.533 3.467 26 O -0.590 6.590 27 C -0.193 4.193 28 C -0.150 4.150 29 C -0.148 4.148 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.435 0.565 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.244 0.756 46 H 0.162 0.838 47 H 0.068 0.932 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.990 -11.696 -14.672 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C -0.032 4.032 4 C 0.263 3.737 5 O -0.468 6.468 6 N -0.399 5.399 7 C 0.051 3.949 8 C -0.154 4.154 9 C 0.067 3.933 10 H 0.088 0.912 11 C -0.203 4.203 12 C -0.184 4.184 13 C 0.034 3.966 14 H 0.095 0.905 15 C -0.167 4.167 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.097 0.903 19 C -0.254 4.254 20 N -0.586 5.586 21 Si 0.800 3.200 22 H -0.227 1.227 23 H -0.205 1.205 24 H -0.206 1.206 25 C 0.323 3.677 26 O -0.470 6.470 27 C -0.213 4.213 28 C -0.187 4.187 29 C -0.186 4.186 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.173 0.827 34 H 0.126 0.874 35 H 0.297 0.703 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.180 0.820 47 H 0.086 0.914 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.435 -12.006 -13.949 25.352 hybrid contribution 1.442 0.982 1.200 2.118 sum -15.993 -11.024 -12.749 23.235 Atomic orbital electron populations 1.22100 0.76268 1.04467 1.03737 1.47459 1.08755 1.04151 1.72326 1.21503 1.01268 0.88014 0.92455 1.22055 0.77424 0.81112 0.93069 1.90627 1.53320 1.55213 1.47631 1.48892 1.56598 1.23952 1.10419 1.20669 0.94846 0.95706 0.83696 1.22174 0.94499 0.98046 1.00713 1.21383 0.97602 0.84689 0.89606 0.91228 1.23387 0.98019 1.00206 0.98664 1.23264 0.96659 1.00680 0.97831 1.21706 0.85887 0.96336 0.92679 0.90468 1.22306 0.99091 0.94911 1.00406 1.45361 1.05996 1.19265 1.61853 1.19283 1.02676 0.91124 1.22938 0.90310 1.25576 1.00436 0.98500 1.00936 1.70055 1.19699 1.20343 1.48509 0.85272 0.77484 0.78981 0.78247 1.22697 1.20487 1.20634 1.20468 0.87028 0.86094 0.74114 1.90675 1.16330 1.88029 1.52000 1.22308 1.03555 0.88742 1.06726 1.22969 1.04003 1.01189 0.90555 1.23015 0.98740 0.96065 1.00747 0.88995 0.89873 0.90744 0.82740 0.87351 0.70328 0.91983 0.94861 0.94161 0.91421 0.88936 0.87226 0.89845 0.90285 0.93592 0.94656 0.82028 0.91366 0.84518 0.84607 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.01 127.77 1.28 2.18 16 2 N -0.60 -12.63 2.36 -851.13 -2.01 -14.64 16 3 C 0.09 2.00 5.89 85.63 0.50 2.51 16 4 C 0.48 14.58 7.90 87.66 0.69 15.27 16 5 O -0.59 -23.03 15.76 -3.04 -0.05 -23.08 16 6 N -0.72 -21.95 2.77 -442.06 -1.22 -23.17 16 7 C 0.16 5.95 3.15 45.09 0.14 6.09 16 8 C -0.11 -5.20 5.42 30.88 0.17 -5.03 16 9 C 0.17 8.00 3.16 45.44 0.14 8.14 16 10 H 0.07 3.82 6.28 -2.39 -0.02 3.80 16 11 C -0.16 -5.50 5.78 31.77 0.18 -5.31 16 12 C -0.15 -4.09 5.78 31.77 0.18 -3.91 16 13 C 0.14 5.16 4.29 45.27 0.19 5.35 16 14 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 15 C -0.13 -4.54 5.47 30.71 0.17 -4.38 16 16 N -0.60 -28.77 2.82 -638.19 -1.80 -30.57 16 17 C -0.23 -12.40 10.38 84.03 0.87 -11.53 16 18 H 0.08 4.05 7.84 -2.91 -0.02 4.03 16 19 C -0.06 -3.36 5.43 84.86 0.46 -2.90 16 20 N -0.94 -55.28 10.59 21.65 0.23 -55.05 16 21 Si 0.97 45.37 29.56 68.60 2.03 47.39 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 C 0.53 14.05 7.46 87.66 0.65 14.70 16 26 O -0.59 -21.29 15.84 -3.03 -0.05 -21.33 16 27 C -0.19 -3.36 4.80 -11.54 -0.06 -3.41 16 28 C -0.15 -2.59 10.23 30.58 0.31 -2.28 16 29 C -0.15 -2.50 10.04 30.58 0.31 -2.20 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.88 6.64 -2.39 -0.02 0.86 16 32 H 0.07 0.90 8.07 -2.38 -0.02 0.88 16 33 H 0.16 1.73 8.07 -2.39 -0.02 1.71 16 34 H 0.11 2.45 7.42 -2.38 -0.02 2.43 16 35 H 0.43 11.32 1.90 -115.68 -0.22 11.10 16 36 H 0.06 2.62 6.90 -2.39 -0.02 2.60 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 2.15 8.03 -2.39 -0.02 2.13 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.83 5.26 -2.39 -0.01 2.81 16 41 H 0.11 2.42 5.25 -2.39 -0.01 2.41 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.16 1.50 7.26 -2.39 -0.02 1.49 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.08 1.80 7.67 -2.39 -0.02 1.79 16 Total: -1.00 -79.72 382.54 4.06 -75.66 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.73 Total: 31.48 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 6.21 Total: 13.31 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -4.81 Total: -123.43 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.10 Total: -44.41 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -79.72 4.06 -75.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713971328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.870 kcal (2) G-P(sol) polarization free energy of solvation -79.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds