Wall clock time and date at job start Tue Mar 31 2020 18:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99965 * 2 1 4 4 O 1.21280 * 119.99913 * 354.45359 * 3 2 1 5 5 C 1.50702 * 119.99846 * 174.72956 * 3 2 1 6 6 C 1.52997 * 119.29646 * 267.06178 * 5 3 2 7 7 C 1.53872 * 121.32722 * 195.22447 * 5 3 2 8 8 H 1.09001 * 121.33378 * 359.43656 * 7 5 3 9 9 C 1.54264 * 106.59813 * 221.93617 * 7 5 3 10 10 C 1.54893 * 104.19485 * 23.61289 * 9 7 5 11 11 C 1.54268 * 117.41034 * 61.40736 * 5 3 2 12 12 C 1.46499 * 119.99777 * 180.02562 * 2 1 3 13 13 H 1.09008 * 110.28545 * 182.87882 * 12 2 1 14 14 C 1.54256 * 110.32578 * 305.00702 * 12 2 1 15 15 C 1.54378 * 105.06081 * 118.89845 * 14 12 2 16 16 N 1.48566 * 104.59329 * 23.85489 * 15 14 12 17 17 C 1.46898 * 110.99730 * 200.96096 * 16 15 14 18 18 C 1.50702 * 109.47034 * 176.30196 * 17 16 15 19 19 O 1.21292 * 119.99625 * 6.03760 * 18 17 16 20 20 N 1.34773 * 120.00046 * 186.04565 * 18 17 16 21 21 C 1.37095 * 120.00307 * 179.97438 * 20 18 17 22 22 H 1.08008 * 119.99427 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00551 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99969 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00188 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46951 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47027 * 119.99855 * 25 23 21 28 28 H 1.48506 * 109.46877 * 239.99975 * 25 23 21 29 29 C 1.48564 * 104.22135 * 320.51703 * 16 15 14 30 30 H 1.09007 * 109.47161 * 84.84998 * 1 2 3 31 31 H 1.09003 * 109.47099 * 204.84981 * 1 2 3 32 32 H 1.08995 * 109.47147 * 324.85069 * 1 2 3 33 33 H 1.08996 * 117.46496 * 356.28760 * 6 5 3 34 34 H 1.08999 * 117.45803 * 141.09861 * 6 5 3 35 35 H 1.08994 * 110.49163 * 264.93474 * 9 7 5 36 36 H 1.09001 * 110.59871 * 142.34698 * 9 7 5 37 37 H 1.09005 * 110.75463 * 203.73987 * 10 9 7 38 38 H 1.09002 * 110.75342 * 80.37289 * 10 9 7 39 39 H 1.09003 * 110.48250 * 235.04412 * 11 5 3 40 40 H 1.09000 * 110.48989 * 357.68405 * 11 5 3 41 41 H 1.08998 * 110.32660 * 237.79814 * 14 12 2 42 42 H 1.09003 * 110.32247 * 359.90099 * 14 12 2 43 43 H 1.08997 * 110.41195 * 142.63273 * 15 14 12 44 44 H 1.08998 * 110.41182 * 264.95896 * 15 14 12 45 45 H 1.09003 * 109.47574 * 296.29720 * 17 16 15 46 46 H 1.09003 * 109.47513 * 56.30014 * 17 16 15 47 47 H 0.96998 * 120.00332 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00407 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.40885 * 280.70758 * 29 16 15 50 50 H 1.08997 * 110.40840 * 158.26734 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5367 2.2151 -0.1015 5 6 3.6411 1.1700 0.1199 6 6 4.2815 1.3008 1.5032 7 6 4.4135 2.4542 0.4690 8 1 3.8967 3.4002 0.6305 9 6 5.6583 2.4810 -0.4417 10 6 5.2634 1.5974 -1.6510 11 6 4.4435 0.4613 -0.9909 12 6 2.1974 -1.2687 -0.0006 13 1 3.2708 -1.0855 0.0509 14 6 1.7466 -2.1482 1.1839 15 6 1.1657 -3.4242 0.5377 16 7 1.8154 -3.4974 -0.7963 17 6 1.0360 -4.3366 -1.7161 18 6 1.6751 -4.3138 -3.0807 19 8 2.7385 -3.7535 -3.2430 20 7 1.0650 -4.9159 -4.1208 21 6 1.6461 -4.8948 -5.3623 22 1 2.5927 -4.3952 -5.5070 23 6 1.0173 -5.5159 -6.4344 24 7 -0.1341 -6.1242 -6.2583 25 14 1.8088 -5.4864 -8.1262 26 1 3.0923 -4.7426 -8.0593 27 1 2.0655 -6.8778 -8.5769 28 1 0.8975 -4.8148 -9.0874 29 6 1.8510 -2.0873 -1.2628 30 1 -0.3634 0.0923 -1.0236 31 1 -0.3633 -0.9325 0.4319 32 1 -0.3633 0.8402 0.5916 33 1 3.6158 1.4505 2.3532 34 1 5.1719 0.7047 1.7033 35 1 6.5188 2.0570 0.0757 36 1 5.8736 3.4988 -0.7670 37 1 6.1501 1.1980 -2.1435 38 1 4.6489 2.1585 -2.3550 39 1 5.1078 -0.2890 -0.5621 40 1 3.7699 0.0056 -1.7167 41 1 2.5989 -2.3981 1.8157 42 1 0.9816 -1.6352 1.7667 43 1 1.4199 -4.3013 1.1329 44 1 0.0843 -3.3381 0.4316 45 1 1.0130 -5.3605 -1.3429 46 1 0.0184 -3.9521 -1.7850 47 1 0.2147 -5.3643 -3.9909 48 1 -0.5733 -6.5575 -7.0068 49 1 0.8771 -1.7912 -1.6525 50 1 2.6211 -1.9579 -2.0232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714007555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:11 Heat of formation + Delta-G solvation = -27.692315 kcal Electronic energy + Delta-G solvation = -30240.577653 eV Core-core repulsion = 26268.756185 eV Total energy + Delta-G solvation = -3971.821468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94640 -39.33639 -38.24985 -37.52172 -35.07279 -33.90225 -31.79482 -31.42799 -30.95735 -29.49301 -28.30466 -27.05302 -26.49748 -24.28234 -23.28318 -22.14089 -21.23380 -20.76186 -20.48896 -19.18179 -18.55571 -17.88469 -17.06978 -16.51998 -15.92112 -15.71273 -15.42045 -15.34486 -14.81870 -14.59456 -14.35451 -14.08236 -13.77582 -13.57622 -13.40127 -13.25558 -13.12834 -12.91970 -12.58020 -12.38146 -12.19056 -11.96856 -11.88390 -11.66335 -11.55285 -11.38950 -11.31612 -11.26109 -11.18429 -11.07462 -10.94158 -10.63044 -10.53334 -10.36205 -10.25226 -9.89841 -9.68971 -9.52810 -8.74470 -8.51989 -8.11184 -7.97463 -6.44636 -3.85449 2.45937 2.82013 3.14355 3.25320 3.31544 3.32260 3.86597 3.99902 4.16835 4.24632 4.38760 4.39648 4.59801 4.63881 4.69281 4.94413 4.98775 5.07189 5.15755 5.19260 5.22214 5.25904 5.27873 5.35393 5.38685 5.41730 5.46308 5.52424 5.62277 5.68676 5.70211 5.71377 5.75351 5.80001 5.84538 5.93055 5.95258 5.98069 6.00236 6.05305 6.20053 6.22646 6.32185 6.46983 6.99909 7.13298 7.32163 7.52718 8.03094 8.09822 8.58087 9.15141 9.50911 10.02132 10.73138 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.003006 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.522423 B = 9313.093101 C =10419.105036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.602 5.602 3 C 0.558 3.442 4 O -0.542 6.542 5 C -0.172 4.172 6 C -0.128 4.128 7 C -0.130 4.130 8 H 0.117 0.883 9 C -0.096 4.096 10 C -0.123 4.123 11 C -0.088 4.088 12 C 0.127 3.873 13 H 0.112 0.888 14 C -0.134 4.134 15 C 0.028 3.972 16 N -0.482 5.482 17 C 0.035 3.965 18 C 0.442 3.558 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.028 3.972 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.043 0.957 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 10.761 16.893 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.334 5.334 3 C 0.347 3.653 4 O -0.419 6.419 5 C -0.175 4.175 6 C -0.165 4.165 7 C -0.149 4.149 8 H 0.135 0.865 9 C -0.133 4.133 10 C -0.160 4.160 11 C -0.126 4.126 12 C 0.023 3.977 13 H 0.130 0.870 14 C -0.173 4.173 15 C -0.100 4.100 16 N -0.206 5.206 17 C -0.097 4.097 18 C 0.227 3.773 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.101 4.101 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.062 0.938 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.291 11.342 16.578 20.772 hybrid contribution -1.410 -0.287 -0.944 1.720 sum 3.881 11.056 15.634 19.538 Atomic orbital electron populations 1.21594 0.79457 1.02527 1.02211 1.47852 1.06656 1.05925 1.73005 1.19449 0.87757 0.82923 0.75219 1.90673 1.69970 1.31559 1.49673 1.22351 0.91399 1.04757 0.98951 1.23499 1.01795 1.00496 0.90703 1.23745 0.97758 0.92843 1.00516 0.86483 1.21990 0.95795 1.00472 0.95048 1.22686 0.99795 0.96112 0.97446 1.22076 0.97800 0.97345 0.95372 1.22203 0.97765 0.82477 0.95284 0.86997 1.22692 1.01607 0.95496 0.97493 1.23185 0.96642 0.98269 0.91930 1.65192 1.46184 1.08098 1.01095 1.22086 0.94991 0.99107 0.93508 1.19681 0.87409 0.84913 0.85251 1.90488 1.23161 1.48181 1.84442 1.41870 1.21848 1.48501 1.07740 1.19743 1.06060 1.32898 0.84079 0.87837 1.25263 0.95956 0.96550 1.00158 1.69615 1.15845 1.35947 1.32863 0.85810 0.79215 0.77988 0.81411 1.19190 1.20713 1.20764 1.23560 1.02333 0.87370 0.96846 0.92570 0.90976 0.91011 0.88187 0.87861 0.91067 0.90984 0.90699 0.91127 0.90171 0.90293 0.90110 0.90736 0.89851 0.94023 0.88935 0.93436 0.77512 0.91901 0.93831 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 8.94 59.85 0.54 1.51 16 2 N -0.60 -7.60 2.80 -172.35 -0.48 -8.08 16 3 C 0.56 7.83 7.17 -10.98 -0.08 7.75 16 4 O -0.54 -9.31 16.57 5.56 0.09 -9.22 16 5 C -0.17 -1.94 1.49 -154.54 -0.23 -2.17 16 6 C -0.13 -1.14 10.00 -25.42 -0.25 -1.39 16 7 C -0.13 -1.31 6.68 -88.19 -0.59 -1.90 16 8 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 9 C -0.10 -0.83 6.64 -25.07 -0.17 -1.00 16 10 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 11 C -0.09 -0.99 4.58 -25.08 -0.11 -1.10 16 12 C 0.13 1.54 2.68 -66.55 -0.18 1.36 16 13 H 0.11 1.33 4.66 -51.92 -0.24 1.09 16 14 C -0.13 -1.36 6.11 -25.35 -0.15 -1.51 16 15 C 0.03 0.32 6.49 -2.18 -0.01 0.31 16 16 N -0.48 -7.51 5.19 -231.40 -1.20 -8.71 16 17 C 0.03 0.60 5.39 -4.98 -0.03 0.57 16 18 C 0.44 10.12 7.43 -10.99 -0.08 10.04 16 19 O -0.58 -14.99 13.99 5.55 0.08 -14.92 16 20 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 21 C -0.30 -8.19 9.68 -14.94 -0.14 -8.34 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 25 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.03 0.43 5.11 -2.18 -0.01 0.42 16 30 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 31 H 0.07 0.70 6.67 -51.93 -0.35 0.35 16 32 H 0.07 0.82 7.67 -51.93 -0.40 0.42 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 40 H 0.08 1.04 6.95 -51.93 -0.36 0.68 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.68 6.82 -51.93 -0.35 0.32 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.45 7.92 -51.93 -0.41 0.04 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.04 0.71 6.98 -51.93 -0.36 0.35 16 50 H 0.11 2.06 6.13 -51.93 -0.32 1.74 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -32.14 391.13 -9.85 -41.99 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.10 Total: 11.18 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.78 Total: 3.65 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -1.02 Total: -54.44 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.17 Total: -24.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.14 -9.85 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714007555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.297 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds