Wall clock time and date at job start Tue Mar 31 2020 18:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00249 * 2 1 4 4 O 1.21282 * 119.99510 * 4.36557 * 3 2 1 5 5 C 1.50691 * 120.00004 * 184.36764 * 3 2 1 6 6 C 1.53002 * 119.75480 * 258.70877 * 5 3 2 7 7 C 1.52997 * 60.37835 * 248.87875 * 6 5 3 8 8 H 1.09001 * 119.75445 * 111.12555 * 7 6 5 9 9 C 1.54264 * 118.19967 * 266.38011 * 7 6 5 10 10 C 1.54888 * 104.19601 * 87.79034 * 9 7 6 11 11 C 1.54270 * 117.41741 * 54.16343 * 5 3 2 12 12 C 1.46503 * 119.99961 * 179.97438 * 2 1 3 13 13 H 1.09000 * 110.27595 * 182.51142 * 12 2 1 14 14 C 1.54602 * 110.30689 * 60.31780 * 12 2 1 15 15 C 1.54927 * 102.91842 * 219.12752 * 14 12 2 16 16 N 1.48531 * 103.23432 * 37.41228 * 15 14 12 17 17 C 1.46896 * 111.00516 * 200.27914 * 16 15 14 18 18 C 1.50700 * 109.47142 * 307.39564 * 17 16 15 19 19 O 1.21294 * 119.99795 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00012 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00009 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00354 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00321 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99590 * 359.97438 * 23 21 20 25 25 Si 1.86789 * 120.00185 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47226 * 60.00202 * 25 23 21 27 27 H 1.48500 * 109.47162 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47561 * 299.99957 * 25 23 21 29 29 C 1.47905 * 105.81867 * 320.79828 * 16 15 14 30 30 H 1.08997 * 109.47122 * 84.86068 * 1 2 3 31 31 H 1.09001 * 109.47190 * 204.86964 * 1 2 3 32 32 H 1.09003 * 109.46948 * 324.86226 * 1 2 3 33 33 H 1.09004 * 117.46346 * 141.27593 * 6 5 3 34 34 H 1.09002 * 117.45801 * 356.48129 * 6 5 3 35 35 H 1.09003 * 110.48899 * 206.47303 * 9 7 6 36 36 H 1.08997 * 110.48490 * 329.11364 * 9 7 6 37 37 H 1.09002 * 110.75695 * 203.74578 * 10 9 7 38 38 H 1.09002 * 110.91070 * 80.44658 * 10 9 7 39 39 H 1.09001 * 110.48711 * 235.05180 * 11 5 3 40 40 H 1.08998 * 110.47947 * 357.68817 * 11 5 3 41 41 H 1.08994 * 110.72082 * 337.48665 * 14 12 2 42 42 H 1.09005 * 110.71902 * 100.76931 * 14 12 2 43 43 H 1.09001 * 110.66982 * 278.97785 * 15 14 12 44 44 H 1.09006 * 110.66862 * 155.85379 * 15 14 12 45 45 H 1.09003 * 109.47272 * 67.39581 * 17 16 15 46 46 H 1.09000 * 109.47110 * 187.39714 * 17 16 15 47 47 H 0.96999 * 120.00309 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00345 * 179.97438 * 24 23 21 49 49 H 1.09008 * 109.91333 * 265.97262 * 29 16 15 50 50 H 1.08992 * 109.91851 * 144.67874 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5351 2.2160 0.0800 5 6 3.6426 1.1691 -0.0994 6 6 4.4865 1.3803 1.1592 7 6 4.4547 2.4637 0.0795 8 1 3.9653 3.4162 0.2832 9 6 5.5543 2.4473 -1.0023 10 6 4.9902 1.5151 -2.1032 11 6 4.2771 0.4110 -1.2837 12 6 2.1975 -1.2688 0.0006 13 1 3.2710 -1.0851 0.0453 14 6 1.8439 -2.0930 -1.2587 15 6 1.7714 -3.5420 -0.7152 16 7 1.1575 -3.3715 0.6265 17 6 1.4351 -4.5316 1.4838 18 6 1.0313 -5.7942 0.7669 19 8 0.5591 -5.7335 -0.3486 20 7 1.1949 -6.9906 1.3654 21 6 0.8280 -8.1392 0.7131 22 1 0.4075 -8.0854 -0.2803 23 6 0.9971 -9.3729 1.3299 24 7 1.5091 -9.4385 2.5383 25 14 0.4965 -10.9378 0.4413 26 1 1.2691 -11.0590 -0.8211 27 1 0.7778 -12.1105 1.3077 28 1 -0.9547 -10.8881 0.1306 29 6 1.7544 -2.1411 1.1897 30 1 -0.3633 0.0921 -1.0235 31 1 -0.3633 -0.9324 0.4322 32 1 -0.3633 0.8404 0.5915 33 1 5.4002 0.7937 1.2561 34 1 3.9578 1.5831 2.0907 35 1 5.7157 3.4502 -1.3975 36 1 6.4816 2.0420 -0.5976 37 1 5.7969 1.0918 -2.7016 38 1 4.2794 2.0463 -2.7362 39 1 4.9982 -0.3232 -0.9244 40 1 3.5064 -0.0721 -1.8842 41 1 0.8803 -1.7842 -1.6637 42 1 2.6270 -2.0020 -2.0115 43 1 2.7697 -3.9712 -0.6297 44 1 1.1389 -4.1605 -1.3520 45 1 2.5004 -4.5681 1.7119 46 1 0.8680 -4.4426 2.4104 47 1 1.5722 -7.0391 2.2577 48 1 1.6269 -10.2995 2.9691 49 1 2.6172 -2.3953 1.8055 50 1 1.0137 -1.6081 1.7856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714007556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:14 Heat of formation + Delta-G solvation = -26.156092 kcal Electronic energy + Delta-G solvation = -29818.832471 eV Core-core repulsion = 25847.077619 eV Total energy + Delta-G solvation = -3971.754853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08843 -39.41547 -38.38391 -37.54094 -35.08699 -33.89460 -32.02138 -31.50412 -30.96135 -29.42044 -28.47839 -27.09770 -26.41266 -24.26695 -23.37148 -22.16050 -21.23925 -20.86288 -20.56427 -19.27463 -18.65252 -17.90807 -17.22380 -16.46466 -16.06232 -15.71862 -15.41771 -15.23843 -14.97070 -14.59246 -14.47703 -14.01997 -13.84791 -13.67763 -13.53455 -13.38140 -13.23280 -12.80550 -12.47573 -12.40377 -12.12625 -12.04049 -11.83679 -11.77979 -11.58150 -11.49261 -11.40538 -11.33934 -11.27476 -11.05513 -10.98696 -10.68898 -10.62508 -10.44758 -10.25774 -10.03643 -9.79472 -9.52379 -8.80530 -8.40896 -8.06723 -7.95111 -6.46200 -3.87226 2.36057 2.79521 3.16690 3.23132 3.25873 3.27127 3.84199 4.01569 4.04996 4.21586 4.24749 4.28473 4.47714 4.56167 4.70754 4.84695 4.94034 4.98784 5.06856 5.09437 5.20354 5.21767 5.27853 5.33094 5.36833 5.38399 5.41277 5.49651 5.51958 5.59266 5.62460 5.67973 5.72637 5.73698 5.82423 5.84716 5.86666 5.92491 5.95393 6.02378 6.20292 6.23029 6.38219 6.60163 7.14231 7.20377 7.28961 7.50833 8.00901 8.03981 8.56415 9.13111 9.48679 10.00064 10.71331 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.002272 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.375702 B =12322.825882 C =12615.448717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.598 5.598 3 C 0.557 3.443 4 O -0.543 6.543 5 C -0.178 4.178 6 C -0.125 4.125 7 C -0.128 4.128 8 H 0.118 0.882 9 C -0.096 4.096 10 C -0.123 4.123 11 C -0.088 4.088 12 C 0.125 3.875 13 H 0.103 0.897 14 C -0.138 4.138 15 C 0.040 3.960 16 N -0.493 5.493 17 C 0.036 3.964 18 C 0.441 3.559 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C 0.021 3.979 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.121 0.879 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.273 0.727 49 H 0.051 0.949 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 20.300 -3.060 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.329 5.329 3 C 0.345 3.655 4 O -0.421 6.421 5 C -0.181 4.181 6 C -0.162 4.162 7 C -0.147 4.147 8 H 0.136 0.864 9 C -0.134 4.134 10 C -0.161 4.161 11 C -0.126 4.126 12 C 0.021 3.979 13 H 0.121 0.879 14 C -0.177 4.177 15 C -0.088 4.088 16 N -0.217 5.217 17 C -0.095 4.095 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.198 1.198 29 C -0.108 4.108 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.139 0.861 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.514 20.744 -3.676 22.367 hybrid contribution 0.792 -1.113 0.466 1.444 sum 8.306 19.631 -3.209 21.556 Atomic orbital electron populations 1.21670 0.78720 1.03638 1.01989 1.47806 1.07047 1.05456 1.72633 1.19378 0.87599 0.83114 0.75426 1.90676 1.69880 1.31406 1.50114 1.22325 0.91075 1.04258 1.00491 1.23133 1.00253 1.00692 0.92111 1.23356 0.98537 0.93475 0.99313 0.86389 1.21997 0.96820 1.00281 0.94287 1.22686 0.99718 0.96147 0.97503 1.22085 0.99372 0.97232 0.93900 1.22247 0.96759 0.83036 0.95891 0.87880 1.23025 1.02538 0.95738 0.96428 1.23470 0.98612 0.95209 0.91463 1.64619 1.53725 1.00810 1.02590 1.22107 0.99490 0.90808 0.97145 1.19680 0.85452 0.84302 0.87861 1.90436 1.49660 1.86274 1.20244 1.41846 1.55400 1.04717 1.17700 1.19648 1.38811 0.82954 1.01562 0.87918 1.25272 0.97135 0.99522 0.95954 1.69598 1.44467 1.26805 1.13333 0.85913 0.79251 0.80165 0.78875 1.19902 1.20967 1.19845 1.23324 0.98699 0.92369 0.96386 0.92807 0.89495 0.91118 0.87896 0.87989 0.90906 0.91004 0.90876 0.91153 0.90477 0.90469 0.90100 0.90891 0.94357 0.86069 0.93261 0.89206 0.77443 0.91759 0.93096 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.02 59.85 0.54 1.48 16 2 N -0.60 -6.95 2.79 -172.38 -0.48 -7.43 16 3 C 0.56 7.05 7.23 -10.99 -0.08 6.97 16 4 O -0.54 -8.68 16.44 5.56 0.09 -8.59 16 5 C -0.18 -1.73 1.54 -154.54 -0.24 -1.96 16 6 C -0.12 -1.01 9.87 -26.73 -0.26 -1.27 16 7 C -0.13 -1.12 6.55 -89.50 -0.59 -1.71 16 8 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 9 C -0.10 -0.66 6.62 -25.07 -0.17 -0.83 16 10 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 11 C -0.09 -0.72 4.63 -25.07 -0.12 -0.83 16 12 C 0.13 1.36 2.46 -66.57 -0.16 1.19 16 13 H 0.10 0.99 4.91 -51.93 -0.26 0.74 16 14 C -0.14 -1.63 6.31 -24.87 -0.16 -1.79 16 15 C 0.04 0.61 5.30 -1.90 -0.01 0.60 16 16 N -0.49 -7.66 5.26 -231.90 -1.22 -8.88 16 17 C 0.04 0.62 5.52 -4.98 -0.03 0.59 16 18 C 0.44 9.95 7.49 -10.99 -0.08 9.86 16 19 O -0.58 -14.74 13.09 5.55 0.07 -14.67 16 20 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 22 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 25 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 C 0.02 0.26 5.79 -2.75 -0.02 0.24 16 30 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.09 1.01 6.73 -51.93 -0.35 0.66 16 32 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.54 7.94 -51.93 -0.41 0.13 16 40 H 0.08 0.68 6.09 -51.93 -0.32 0.36 16 41 H 0.08 1.01 7.17 -51.93 -0.37 0.63 16 42 H 0.07 0.74 7.32 -51.93 -0.38 0.36 16 43 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 44 H 0.12 2.29 5.97 -51.93 -0.31 1.98 16 45 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 46 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.05 0.57 7.57 -51.92 -0.39 0.18 16 50 H 0.08 1.02 6.87 -51.93 -0.36 0.66 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -31.28 387.74 -9.82 -41.10 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.99 Total: 10.43 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.78 Total: 3.72 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -1.03 Total: -53.46 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.26 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.28 -9.82 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714007556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.944 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds