Wall clock time and date at job start Tue Mar 31 2020 18:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00249 * 2 1 4 4 O 1.21282 * 119.99510 * 4.36557 * 3 2 1 5 5 C 1.50691 * 120.00004 * 184.36764 * 3 2 1 6 6 C 1.53002 * 119.75480 * 258.70877 * 5 3 2 7 7 C 1.52997 * 60.37835 * 248.87875 * 6 5 3 8 8 H 1.09001 * 119.75445 * 111.12555 * 7 6 5 9 9 C 1.54264 * 118.19967 * 266.38011 * 7 6 5 10 10 C 1.54888 * 104.19601 * 87.79034 * 9 7 6 11 11 C 1.54270 * 117.41741 * 54.16343 * 5 3 2 12 12 C 1.46503 * 119.99961 * 179.97438 * 2 1 3 13 13 H 1.09000 * 110.27595 * 182.51142 * 12 2 1 14 14 C 1.54602 * 110.30689 * 60.31780 * 12 2 1 15 15 C 1.54927 * 102.91842 * 219.12752 * 14 12 2 16 16 N 1.48531 * 103.23432 * 37.41228 * 15 14 12 17 17 C 1.46896 * 111.00516 * 200.27914 * 16 15 14 18 18 C 1.50700 * 109.47142 * 307.39564 * 17 16 15 19 19 O 1.21294 * 119.99795 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00012 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00009 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00354 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00321 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99590 * 359.97438 * 23 21 20 25 25 Si 1.86789 * 120.00185 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47226 * 60.00202 * 25 23 21 27 27 H 1.48500 * 109.47162 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47561 * 299.99957 * 25 23 21 29 29 C 1.47905 * 105.81867 * 320.79828 * 16 15 14 30 30 H 1.08997 * 109.47122 * 84.86068 * 1 2 3 31 31 H 1.09001 * 109.47190 * 204.86964 * 1 2 3 32 32 H 1.09003 * 109.46948 * 324.86226 * 1 2 3 33 33 H 1.09004 * 117.46346 * 141.27593 * 6 5 3 34 34 H 1.09002 * 117.45801 * 356.48129 * 6 5 3 35 35 H 1.09003 * 110.48899 * 206.47303 * 9 7 6 36 36 H 1.08997 * 110.48490 * 329.11364 * 9 7 6 37 37 H 1.09002 * 110.75695 * 203.74578 * 10 9 7 38 38 H 1.09002 * 110.91070 * 80.44658 * 10 9 7 39 39 H 1.09001 * 110.48711 * 235.05180 * 11 5 3 40 40 H 1.08998 * 110.47947 * 357.68817 * 11 5 3 41 41 H 1.08994 * 110.72082 * 337.48665 * 14 12 2 42 42 H 1.09005 * 110.71902 * 100.76931 * 14 12 2 43 43 H 1.09001 * 110.66982 * 278.97785 * 15 14 12 44 44 H 1.09006 * 110.66862 * 155.85379 * 15 14 12 45 45 H 1.09003 * 109.47272 * 67.39581 * 17 16 15 46 46 H 1.09000 * 109.47110 * 187.39714 * 17 16 15 47 47 H 0.96999 * 120.00309 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00345 * 179.97438 * 24 23 21 49 49 H 1.09008 * 109.91333 * 265.97262 * 29 16 15 50 50 H 1.08992 * 109.91851 * 144.67874 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5351 2.2160 0.0800 5 6 3.6426 1.1691 -0.0994 6 6 4.4865 1.3803 1.1592 7 6 4.4547 2.4637 0.0795 8 1 3.9653 3.4162 0.2832 9 6 5.5543 2.4473 -1.0023 10 6 4.9902 1.5151 -2.1032 11 6 4.2771 0.4110 -1.2837 12 6 2.1975 -1.2688 0.0006 13 1 3.2710 -1.0851 0.0453 14 6 1.8439 -2.0930 -1.2587 15 6 1.7714 -3.5420 -0.7152 16 7 1.1575 -3.3715 0.6265 17 6 1.4351 -4.5316 1.4838 18 6 1.0313 -5.7942 0.7669 19 8 0.5591 -5.7335 -0.3486 20 7 1.1949 -6.9906 1.3654 21 6 0.8280 -8.1392 0.7131 22 1 0.4075 -8.0854 -0.2803 23 6 0.9971 -9.3729 1.3299 24 7 1.5091 -9.4385 2.5383 25 14 0.4965 -10.9378 0.4413 26 1 1.2691 -11.0590 -0.8211 27 1 0.7778 -12.1105 1.3077 28 1 -0.9547 -10.8881 0.1306 29 6 1.7544 -2.1411 1.1897 30 1 -0.3633 0.0921 -1.0235 31 1 -0.3633 -0.9324 0.4322 32 1 -0.3633 0.8404 0.5915 33 1 5.4002 0.7937 1.2561 34 1 3.9578 1.5831 2.0907 35 1 5.7157 3.4502 -1.3975 36 1 6.4816 2.0420 -0.5976 37 1 5.7969 1.0918 -2.7016 38 1 4.2794 2.0463 -2.7362 39 1 4.9982 -0.3232 -0.9244 40 1 3.5064 -0.0721 -1.8842 41 1 0.8803 -1.7842 -1.6637 42 1 2.6270 -2.0020 -2.0115 43 1 2.7697 -3.9712 -0.6297 44 1 1.1389 -4.1605 -1.3520 45 1 2.5004 -4.5681 1.7119 46 1 0.8680 -4.4426 2.4104 47 1 1.5722 -7.0391 2.2577 48 1 1.6269 -10.2995 2.9691 49 1 2.6172 -2.3953 1.8055 50 1 1.0137 -1.6081 1.7856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714007556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:13 Heat of formation + Delta-G solvation = -47.010819 kcal Electronic energy + Delta-G solvation = -29819.736800 eV Core-core repulsion = 25847.077619 eV Total energy + Delta-G solvation = -3972.659182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.94278 -40.67927 -39.53783 -38.83131 -36.35199 -35.71561 -33.33047 -32.61424 -32.27651 -30.17138 -29.55587 -28.21114 -27.65905 -25.98324 -24.06859 -22.98958 -22.46784 -21.65827 -21.27267 -21.01584 -19.84663 -19.50553 -18.06111 -17.73560 -17.40922 -16.81471 -16.59284 -16.36161 -16.18790 -15.92307 -15.66316 -15.55316 -15.22192 -14.68355 -14.33945 -14.22986 -14.03419 -13.97727 -13.92533 -13.54757 -13.35501 -13.13609 -12.98986 -12.94493 -12.81848 -12.75643 -12.50721 -12.41669 -12.24142 -12.13118 -12.03125 -11.99983 -11.84607 -11.63541 -11.43654 -11.35615 -10.72557 -10.65975 -10.19944 -9.99437 -9.71604 -9.30226 -8.45442 -5.93631 1.40256 1.42570 1.43223 1.53007 1.88430 2.06312 2.29467 2.57196 2.86509 3.22011 3.33331 3.35084 3.50583 3.61695 3.65376 3.76242 3.87513 4.08418 4.23722 4.26581 4.32408 4.38949 4.39613 4.42163 4.49792 4.51157 4.54354 4.59499 4.64807 4.70589 4.73046 4.81059 4.82305 4.86830 4.91541 4.97194 5.05241 5.13356 5.15969 5.21019 5.27946 5.29677 5.42623 5.43610 5.46382 5.87229 5.96300 6.11197 6.34246 6.62129 7.07630 7.14513 7.57635 8.13373 8.71742 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.002272 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.375702 B =12322.825882 C =12615.448717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.595 5.595 3 C 0.552 3.448 4 O -0.585 6.585 5 C -0.192 4.192 6 C -0.110 4.110 7 C -0.134 4.134 8 H 0.099 0.901 9 C -0.091 4.091 10 C -0.122 4.122 11 C -0.086 4.086 12 C 0.135 3.865 13 H 0.126 0.874 14 C -0.127 4.127 15 C 0.042 3.958 16 N -0.510 5.510 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.613 6.613 20 N -0.573 5.573 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.273 1.273 29 C 0.024 3.976 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.072 0.928 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 20.519 -2.719 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.326 5.326 3 C 0.342 3.658 4 O -0.466 6.466 5 C -0.195 4.195 6 C -0.147 4.147 7 C -0.153 4.153 8 H 0.117 0.883 9 C -0.128 4.128 10 C -0.160 4.160 11 C -0.124 4.124 12 C 0.031 3.969 13 H 0.144 0.856 14 C -0.166 4.166 15 C -0.085 4.085 16 N -0.235 5.235 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.499 6.499 20 N -0.210 5.210 21 C -0.460 4.460 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.199 1.199 29 C -0.104 4.104 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.632 20.965 -3.323 23.310 hybrid contribution 0.074 -1.087 0.340 1.141 sum 9.707 19.879 -2.982 22.322 Atomic orbital electron populations 1.21620 0.79087 1.03236 1.01912 1.47857 1.07004 1.05686 1.72010 1.19955 0.88988 0.82523 0.74363 1.90653 1.71055 1.32792 1.52068 1.22376 0.89106 1.05695 1.02326 1.23239 1.00402 0.99938 0.91107 1.23437 0.98891 0.92570 1.00408 0.88302 1.22008 0.96691 1.00679 0.93431 1.22690 0.99889 0.95894 0.97511 1.22126 0.99472 0.97640 0.93122 1.22237 0.97736 0.82181 0.94707 0.85645 1.22924 1.02974 0.93383 0.97272 1.23250 0.97444 0.96742 0.91086 1.64567 1.54922 1.01362 1.02647 1.21997 1.01024 0.88391 0.96949 1.20700 0.83607 0.85417 0.87499 1.90443 1.50516 1.87065 1.21875 1.41920 1.56276 1.04918 1.17909 1.19607 1.40395 0.84670 1.01331 0.90214 1.26010 0.96748 1.01869 0.96647 1.69660 1.44731 1.27697 1.14086 0.85018 0.78705 0.76830 0.77989 1.19611 1.19659 1.19856 1.23353 0.99393 0.90780 0.96901 0.92746 0.89566 0.91775 0.85359 0.88551 0.90540 0.89206 0.89091 0.92553 0.88487 0.91331 0.91052 0.88660 0.94318 0.90190 0.90803 0.87559 0.77046 0.91345 0.91027 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 9.02 127.77 1.15 3.06 16 2 N -0.60 -13.13 2.79 -817.68 -2.28 -15.41 16 3 C 0.55 13.49 7.23 87.65 0.63 14.13 16 4 O -0.59 -18.91 16.44 -3.04 -0.05 -18.96 16 5 C -0.19 -3.31 1.54 -52.20 -0.08 -3.39 16 6 C -0.11 -1.46 9.87 30.59 0.30 -1.16 16 7 C -0.13 -2.12 6.55 -10.07 -0.07 -2.19 16 8 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 9 C -0.09 -1.00 6.62 31.67 0.21 -0.79 16 10 C -0.12 -1.44 6.91 31.88 0.22 -1.22 16 11 C -0.09 -1.14 4.63 31.67 0.15 -0.99 16 12 C 0.14 2.62 2.46 45.87 0.11 2.73 16 13 H 0.13 1.94 4.91 -2.39 -0.01 1.93 16 14 C -0.13 -2.79 6.31 31.80 0.20 -2.59 16 15 C 0.04 1.28 5.30 86.65 0.46 1.74 16 16 N -0.51 -15.18 5.26 -887.59 -4.67 -19.85 16 17 C 0.05 1.55 5.52 85.56 0.47 2.02 16 18 C 0.44 19.96 7.49 87.66 0.66 20.62 16 19 O -0.61 -31.92 13.09 -3.07 -0.04 -31.96 16 20 N -0.57 -28.46 5.29 -306.98 -1.62 -30.09 16 21 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -48.87 13.05 21.67 0.28 -48.59 16 25 Si 0.99 42.20 29.55 68.60 2.03 44.22 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 C 0.02 0.52 5.79 86.44 0.50 1.03 16 30 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.09 1.96 6.73 -2.39 -0.02 1.95 16 32 H 0.06 1.54 7.52 -2.39 -0.02 1.53 16 33 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 0.92 7.94 -2.39 -0.02 0.90 16 40 H 0.07 1.03 6.09 -2.39 -0.01 1.01 16 41 H 0.07 1.73 7.17 -2.39 -0.02 1.71 16 42 H 0.09 1.70 7.32 -2.38 -0.02 1.68 16 43 H 0.04 1.15 8.02 -2.39 -0.02 1.13 16 44 H 0.08 3.12 5.97 -2.38 -0.01 3.10 16 45 H 0.07 2.07 7.81 -2.39 -0.02 2.05 16 46 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 48 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 49 H 0.07 1.32 7.57 -2.38 -0.02 1.30 16 50 H 0.08 1.87 6.87 -2.39 -0.02 1.85 16 Total: -1.00 -69.62 387.74 0.07 -69.55 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: 0.22 Total: 35.76 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.20 Total: 15.31 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -8.29 Total: -113.93 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.09 Total: -50.92 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.62 0.07 -69.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714007556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.544 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds