Wall clock time and date at job start Tue Mar 31 2020 18:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47015 * 264.50325 * 3 2 1 5 5 C 1.52994 * 109.47058 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47331 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47570 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99742 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00548 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99432 * 0.02562 * 9 7 6 11 11 C 1.46495 * 120.00551 * 179.97438 * 9 7 6 12 12 H 1.09001 * 110.28528 * 0.70250 * 11 9 7 13 13 C 1.54262 * 110.32442 * 122.82368 * 11 9 7 14 14 C 1.54389 * 105.05852 * 118.99997 * 13 11 9 15 15 N 1.48565 * 104.58934 * 23.85513 * 14 13 11 16 16 C 1.46904 * 110.99450 * 200.96181 * 15 14 13 17 17 C 1.50703 * 109.46986 * 176.49480 * 16 15 14 18 18 O 1.21287 * 119.99865 * 6.05954 * 17 16 15 19 19 N 1.34773 * 119.99986 * 186.05593 * 17 16 15 20 20 C 1.37092 * 120.00186 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99675 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99980 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00095 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47021 * 60.00364 * 24 22 20 26 26 H 1.48494 * 109.47154 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47016 * 300.00640 * 24 22 20 28 28 C 1.48555 * 104.22430 * 320.51536 * 15 14 13 29 29 H 4.44650 * 5.63402 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.46860 * 144.51043 * 3 2 1 31 31 H 1.09000 * 109.47623 * 24.49935 * 3 2 1 32 32 H 1.09003 * 109.47324 * 60.00172 * 4 3 2 33 33 H 1.08996 * 109.47040 * 300.00045 * 4 3 2 34 34 H 1.09000 * 109.47771 * 59.99762 * 5 4 3 35 35 H 1.09005 * 109.47414 * 299.99859 * 5 4 3 36 36 H 1.09003 * 109.47155 * 59.99674 * 6 5 4 37 37 H 1.09000 * 109.47223 * 300.00094 * 6 5 4 38 38 H 1.09005 * 109.47070 * 269.99627 * 10 9 7 39 39 H 1.08997 * 109.47216 * 29.99622 * 10 9 7 40 40 H 1.08998 * 109.47057 * 150.00137 * 10 9 7 41 41 H 1.08998 * 110.32388 * 237.89613 * 13 11 9 42 42 H 1.09000 * 110.32331 * 0.10636 * 13 11 9 43 43 H 1.08999 * 110.40780 * 142.63132 * 14 13 11 44 44 H 1.09001 * 110.40847 * 264.96238 * 14 13 11 45 45 H 1.09003 * 109.47034 * 296.48930 * 16 15 14 46 46 H 1.08993 * 109.47290 * 56.49041 * 16 15 14 47 47 H 0.97001 * 119.99921 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00235 * 179.97438 * 23 22 20 49 49 H 1.09004 * 110.41370 * 280.70528 * 28 15 14 50 50 H 1.09000 * 110.41196 * 158.26401 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.1391 1.4360 5 6 4.6859 0.1404 1.4359 6 6 5.1958 0.2794 2.8717 7 6 6.7028 0.2801 2.8718 8 8 7.3092 0.1798 1.8263 9 7 7.3767 0.3922 4.0336 10 6 6.6440 0.5129 5.2965 11 6 8.8416 0.3923 4.0337 12 1 9.2196 0.3067 3.0149 13 6 9.3773 1.6777 4.6976 14 6 10.1943 1.1905 5.9136 15 7 10.5837 -0.2013 5.5695 16 6 10.9234 -0.9665 6.7767 17 6 11.2290 -2.3928 6.3979 18 8 11.2774 -2.7127 5.2290 19 7 11.4485 -3.3127 7.3580 20 6 11.7259 -4.6103 7.0135 21 1 11.7690 -4.8952 5.9726 22 6 11.9527 -5.5587 8.0034 23 7 11.9008 -5.2120 9.2698 24 14 12.3315 -7.3267 7.5339 25 1 13.5660 -7.3663 6.7096 26 1 12.5312 -8.1336 8.7643 27 1 11.1977 -7.8856 6.7545 28 6 9.3801 -0.7632 4.9043 29 1 -1.0500 0.0002 0.0000 30 1 3.0089 0.8376 -0.5966 31 1 3.0098 -0.9343 -0.4261 32 1 2.7930 -0.6978 2.0327 33 1 2.7922 1.0740 1.8621 34 1 5.0486 0.9774 0.8393 35 1 5.0501 -0.7944 1.0095 36 1 4.8332 -0.5573 3.4687 37 1 4.8317 1.2144 3.2977 38 1 6.4615 1.5658 5.5115 39 1 5.6921 -0.0118 5.2159 40 1 7.2335 0.0745 6.1018 41 1 10.0182 2.2228 4.0046 42 1 8.5502 2.3076 5.0250 43 1 11.0804 1.8107 6.0492 44 1 9.5803 1.2038 6.8141 45 1 11.7967 -0.5224 7.2545 46 1 10.0814 -0.9466 7.4684 47 1 11.4101 -3.0567 8.2928 48 1 12.0588 -5.8741 9.9609 49 1 8.6380 -1.0576 5.6465 50 1 9.6530 -1.6141 4.2802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715007955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:30 Heat of formation + Delta-G solvation = -18.591038 kcal Electronic energy + Delta-G solvation = -28368.266806 eV Core-core repulsion = 24396.839999 eV Total energy + Delta-G solvation = -3971.426807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41670 -38.93003 -37.59074 -36.41077 -35.19857 -33.90746 -33.49213 -31.60270 -31.11391 -30.10556 -28.54521 -27.15473 -26.57865 -25.26689 -24.14752 -21.92314 -21.18975 -20.74080 -19.16683 -19.04183 -18.33701 -17.87725 -17.33373 -16.49045 -16.38417 -15.97355 -15.46670 -15.24162 -14.83753 -14.58841 -14.53243 -14.11931 -14.01586 -13.86824 -13.54388 -13.32638 -13.07015 -12.96772 -12.68980 -12.47290 -12.26504 -12.05757 -11.96580 -11.90313 -11.57790 -11.52824 -11.47602 -11.29830 -11.18506 -10.98804 -10.91547 -10.64652 -10.51554 -10.44328 -10.41875 -10.22082 -9.80292 -9.48858 -8.74465 -8.47791 -8.07065 -7.95033 -6.42664 -3.83380 2.46973 2.51609 2.53693 2.83320 3.19665 3.25333 3.30019 3.89185 3.98388 4.06671 4.28803 4.34373 4.54693 4.60241 4.68319 4.74886 4.86336 4.95102 4.97200 5.05830 5.11409 5.15837 5.21538 5.24207 5.30074 5.35648 5.37950 5.45176 5.46975 5.53269 5.64739 5.67883 5.71073 5.75321 5.83830 5.89727 5.91717 6.03517 6.04489 6.10405 6.25356 6.39834 6.52331 7.10305 7.18432 7.27753 7.28948 7.54316 8.04986 8.08947 8.60706 9.17224 9.52968 10.05019 10.74949 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.002079 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.044063 B =13467.984200 C =15080.008630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.106 4.106 6 C -0.139 4.139 7 C 0.513 3.487 8 O -0.538 6.538 9 N -0.610 5.610 10 C 0.073 3.927 11 C 0.133 3.867 12 H 0.111 0.889 13 C -0.131 4.131 14 C 0.029 3.971 15 N -0.483 5.483 16 C 0.036 3.964 17 C 0.441 3.559 18 O -0.577 6.577 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.030 3.970 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.042 0.958 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.937 15.867 -7.151 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.415 6.415 9 N -0.343 5.343 10 C -0.070 4.070 11 C 0.029 3.971 12 H 0.129 0.871 13 C -0.170 4.170 14 C -0.099 4.099 15 N -0.207 5.207 16 C -0.096 4.096 17 C 0.227 3.773 18 O -0.461 6.461 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.099 4.099 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.053 15.443 -8.649 24.579 hybrid contribution -0.736 -0.741 1.392 1.740 sum -17.789 14.702 -7.258 24.193 Atomic orbital electron populations 1.24917 0.96008 1.01559 1.00941 1.23238 0.94673 1.00105 1.00337 1.18779 0.84475 1.03662 0.98308 1.21557 0.95350 1.02698 0.95544 1.21369 0.93846 1.04014 0.95163 1.21708 0.91996 1.04225 0.99917 1.20734 0.90253 0.75698 0.83186 1.90705 1.70396 1.49219 1.31138 1.47953 1.06634 1.72907 1.06827 1.21793 0.97156 1.01537 0.86480 1.21921 0.78169 0.94657 1.02315 0.87054 1.22646 0.99469 0.97214 0.97643 1.23174 0.98884 0.91590 0.96258 1.65176 1.32876 1.00633 1.22060 1.22076 1.01156 0.94756 0.91579 1.19707 0.84825 0.86175 0.86636 1.90510 1.56418 1.80804 1.18329 1.41850 1.61764 1.08420 1.07974 1.19655 1.44636 0.83749 0.94844 0.87963 1.25252 0.97432 1.00449 0.94745 1.69601 1.49785 1.35716 0.99247 0.85922 0.79224 0.81505 0.77607 1.19860 1.20981 1.19930 1.23531 0.90548 0.98069 0.97730 0.76752 0.89402 0.89305 0.91414 0.91534 0.90894 0.90728 0.88790 0.88978 0.92494 0.90810 0.90754 0.90303 0.90996 0.89957 0.94076 0.88968 0.93509 0.77522 0.91837 0.93957 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.18 -1.55 13.34 -37.12 -0.50 -2.05 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.11 -0.74 5.17 -26.73 -0.14 -0.88 16 5 C -0.11 -0.84 4.50 -26.73 -0.12 -0.96 16 6 C -0.14 -1.09 4.25 -27.89 -0.12 -1.21 16 7 C 0.51 6.25 7.67 -10.99 -0.08 6.16 16 8 O -0.54 -8.70 15.34 5.56 0.09 -8.61 16 9 N -0.61 -7.00 2.80 -172.36 -0.48 -7.48 16 10 C 0.07 0.59 9.15 59.85 0.55 1.14 16 11 C 0.13 1.83 3.46 -66.55 -0.23 1.60 16 12 H 0.11 1.80 6.96 -51.93 -0.36 1.44 16 13 C -0.13 -1.47 6.47 -25.34 -0.16 -1.63 16 14 C 0.03 0.36 6.49 -2.17 -0.01 0.34 16 15 N -0.48 -8.04 5.18 -231.40 -1.20 -9.24 16 16 C 0.04 0.64 5.39 -4.97 -0.03 0.61 16 17 C 0.44 10.39 7.43 -10.99 -0.08 10.30 16 18 O -0.58 -15.61 14.01 5.55 0.08 -15.53 16 19 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.03 0.49 5.11 -2.19 -0.01 0.48 16 29 H 0.22 0.92 7.80 -54.09 -0.42 0.50 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 35 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.09 0.63 7.40 -51.93 -0.38 0.25 16 37 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 38 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 39 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 40 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.45 7.92 -51.93 -0.41 0.04 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.05 0.74 7.98 -51.93 -0.41 0.33 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.04 0.67 6.06 -51.93 -0.31 0.36 16 50 H 0.11 2.26 6.54 -51.93 -0.34 1.92 16 LS Contribution 408.31 15.07 6.15 6.15 Total: -1.00 -34.02 408.31 -8.65 -42.67 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.15 Total: 9.30 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.78 Total: 4.59 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -1.02 Total: -54.64 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.02 -8.65 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715007955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.079 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds