Wall clock time and date at job start Tue Mar 31 2020 18:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47015 * 264.50325 * 3 2 1 5 5 C 1.52994 * 109.47058 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47331 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47570 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99742 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00548 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99432 * 0.02562 * 9 7 6 11 11 C 1.46495 * 120.00551 * 179.97438 * 9 7 6 12 12 H 1.09001 * 110.28528 * 0.70250 * 11 9 7 13 13 C 1.54262 * 110.32442 * 122.82368 * 11 9 7 14 14 C 1.54389 * 105.05852 * 118.99997 * 13 11 9 15 15 N 1.48565 * 104.58934 * 23.85513 * 14 13 11 16 16 C 1.46904 * 110.99450 * 200.96181 * 15 14 13 17 17 C 1.50703 * 109.46986 * 176.49480 * 16 15 14 18 18 O 1.21287 * 119.99865 * 6.05954 * 17 16 15 19 19 N 1.34773 * 119.99986 * 186.05593 * 17 16 15 20 20 C 1.37092 * 120.00186 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99675 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99980 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00095 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47021 * 60.00364 * 24 22 20 26 26 H 1.48494 * 109.47154 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47016 * 300.00640 * 24 22 20 28 28 C 1.48555 * 104.22430 * 320.51536 * 15 14 13 29 29 H 4.44650 * 5.63402 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.46860 * 144.51043 * 3 2 1 31 31 H 1.09000 * 109.47623 * 24.49935 * 3 2 1 32 32 H 1.09003 * 109.47324 * 60.00172 * 4 3 2 33 33 H 1.08996 * 109.47040 * 300.00045 * 4 3 2 34 34 H 1.09000 * 109.47771 * 59.99762 * 5 4 3 35 35 H 1.09005 * 109.47414 * 299.99859 * 5 4 3 36 36 H 1.09003 * 109.47155 * 59.99674 * 6 5 4 37 37 H 1.09000 * 109.47223 * 300.00094 * 6 5 4 38 38 H 1.09005 * 109.47070 * 269.99627 * 10 9 7 39 39 H 1.08997 * 109.47216 * 29.99622 * 10 9 7 40 40 H 1.08998 * 109.47057 * 150.00137 * 10 9 7 41 41 H 1.08998 * 110.32388 * 237.89613 * 13 11 9 42 42 H 1.09000 * 110.32331 * 0.10636 * 13 11 9 43 43 H 1.08999 * 110.40780 * 142.63132 * 14 13 11 44 44 H 1.09001 * 110.40847 * 264.96238 * 14 13 11 45 45 H 1.09003 * 109.47034 * 296.48930 * 16 15 14 46 46 H 1.08993 * 109.47290 * 56.49041 * 16 15 14 47 47 H 0.97001 * 119.99921 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00235 * 179.97438 * 23 22 20 49 49 H 1.09004 * 110.41370 * 280.70528 * 28 15 14 50 50 H 1.09000 * 110.41196 * 158.26401 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.1391 1.4360 5 6 4.6859 0.1404 1.4359 6 6 5.1958 0.2794 2.8717 7 6 6.7028 0.2801 2.8718 8 8 7.3092 0.1798 1.8263 9 7 7.3767 0.3922 4.0336 10 6 6.6440 0.5129 5.2965 11 6 8.8416 0.3923 4.0337 12 1 9.2196 0.3067 3.0149 13 6 9.3773 1.6777 4.6976 14 6 10.1943 1.1905 5.9136 15 7 10.5837 -0.2013 5.5695 16 6 10.9234 -0.9665 6.7767 17 6 11.2290 -2.3928 6.3979 18 8 11.2774 -2.7127 5.2290 19 7 11.4485 -3.3127 7.3580 20 6 11.7259 -4.6103 7.0135 21 1 11.7690 -4.8952 5.9726 22 6 11.9527 -5.5587 8.0034 23 7 11.9008 -5.2120 9.2698 24 14 12.3315 -7.3267 7.5339 25 1 13.5660 -7.3663 6.7096 26 1 12.5312 -8.1336 8.7643 27 1 11.1977 -7.8856 6.7545 28 6 9.3801 -0.7632 4.9043 29 1 -1.0500 0.0002 0.0000 30 1 3.0089 0.8376 -0.5966 31 1 3.0098 -0.9343 -0.4261 32 1 2.7930 -0.6978 2.0327 33 1 2.7922 1.0740 1.8621 34 1 5.0486 0.9774 0.8393 35 1 5.0501 -0.7944 1.0095 36 1 4.8332 -0.5573 3.4687 37 1 4.8317 1.2144 3.2977 38 1 6.4615 1.5658 5.5115 39 1 5.6921 -0.0118 5.2159 40 1 7.2335 0.0745 6.1018 41 1 10.0182 2.2228 4.0046 42 1 8.5502 2.3076 5.0250 43 1 11.0804 1.8107 6.0492 44 1 9.5803 1.2038 6.8141 45 1 11.7967 -0.5224 7.2545 46 1 10.0814 -0.9466 7.4684 47 1 11.4101 -3.0567 8.2928 48 1 12.0588 -5.8741 9.9609 49 1 8.6380 -1.0576 5.6465 50 1 9.6530 -1.6141 4.2802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715007955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:29 Heat of formation + Delta-G solvation = -42.097553 kcal Electronic energy + Delta-G solvation = -28369.286125 eV Core-core repulsion = 24396.839999 eV Total energy + Delta-G solvation = -3972.446126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44198 -40.38855 -39.08242 -37.03656 -36.32024 -35.85211 -34.14910 -33.34081 -32.53261 -30.82142 -29.57775 -28.39658 -27.64700 -26.33495 -25.61820 -22.70247 -22.35394 -21.61295 -20.96877 -19.96623 -19.87807 -18.86715 -18.31039 -17.71477 -17.41369 -17.12631 -16.65050 -16.54599 -16.11311 -15.94743 -15.76649 -15.35894 -15.10806 -14.99656 -14.51018 -14.40257 -14.10963 -13.85410 -13.80041 -13.60901 -13.51985 -13.25455 -13.09324 -12.96507 -12.77625 -12.65053 -12.51642 -12.44667 -12.33317 -12.23505 -12.15624 -12.12683 -11.75397 -11.59618 -11.48996 -11.12009 -10.97015 -10.76309 -10.30760 -10.02443 -9.66843 -9.39354 -8.47948 -5.96396 1.37796 1.40004 1.50592 1.61545 1.85956 1.93556 1.97844 2.03744 2.27598 2.87713 3.18700 3.34953 3.43473 3.54663 3.70450 3.80377 3.96981 4.03655 4.04717 4.20586 4.27651 4.31316 4.35368 4.41360 4.43007 4.46351 4.54974 4.60961 4.62597 4.71349 4.75628 4.84930 4.85714 4.91141 4.96992 5.00562 5.09941 5.10766 5.15543 5.22131 5.33768 5.39233 5.42162 5.48172 5.81832 5.92560 6.08037 6.39846 6.59674 6.72738 7.11936 7.17477 7.54787 8.11666 8.69063 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.002079 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.044063 B =13467.984200 C =15080.008630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.129 4.129 7 C 0.503 3.497 8 O -0.590 6.590 9 N -0.609 5.609 10 C 0.066 3.934 11 C 0.138 3.862 12 H 0.075 0.925 13 C -0.118 4.118 14 C 0.034 3.966 15 N -0.510 5.510 16 C 0.050 3.950 17 C 0.437 3.563 18 O -0.619 6.619 19 N -0.571 5.571 20 C -0.335 4.335 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.917 5.917 24 Si 0.990 3.010 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.273 1.273 28 C 0.038 3.962 29 H 0.241 0.759 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.049 0.951 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.844 17.550 -5.182 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.168 4.168 7 C 0.293 3.707 8 O -0.471 6.471 9 N -0.342 5.342 10 C -0.075 4.075 11 C 0.033 3.967 12 H 0.093 0.907 13 C -0.157 4.157 14 C -0.094 4.094 15 N -0.235 5.235 16 C -0.082 4.082 17 C 0.224 3.776 18 O -0.505 6.505 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.210 4.210 23 N -0.558 5.558 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.199 1.199 28 C -0.091 4.091 29 H 0.258 0.742 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.980 17.157 -6.624 26.429 hybrid contribution -0.157 -1.247 0.740 1.459 sum -19.137 15.910 -5.884 25.573 Atomic orbital electron populations 1.25694 0.96951 1.00614 0.99977 1.23707 0.95515 1.01060 1.01314 1.18826 0.84113 1.03831 0.98786 1.21445 0.93800 1.03359 0.95353 1.21298 0.94935 1.02537 0.95251 1.21756 0.88393 1.06542 1.00145 1.21591 0.92033 0.74524 0.82540 1.90684 1.71721 1.51618 1.33064 1.48066 1.05703 1.72214 1.08187 1.22092 0.97421 1.03789 0.84231 1.21595 0.80016 0.95092 0.99953 0.90659 1.22595 1.00167 0.95856 0.97049 1.23280 1.00109 0.88563 0.97410 1.65094 1.33510 1.02780 1.22084 1.21951 1.03097 0.90627 0.92489 1.20825 0.82751 0.88319 0.85706 1.90498 1.57623 1.82158 1.20222 1.41898 1.62412 1.08089 1.08505 1.19586 1.47089 0.85683 0.94073 0.90673 1.25982 0.96583 1.03829 0.94596 1.69652 1.49433 1.37007 0.99730 0.85035 0.78760 0.76996 0.77819 1.19926 1.19220 1.19858 1.23256 0.90888 0.97486 0.97506 0.74218 0.88939 0.89503 0.91138 0.90384 0.91845 0.92849 0.87000 0.85780 0.89523 0.88637 0.91469 0.90254 0.88067 0.88486 0.91596 0.86749 0.90829 0.76921 0.91246 0.93322 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.96 19.25 74.32 1.43 -1.52 16 2 C -0.22 -3.46 13.34 31.12 0.42 -3.05 16 3 C -0.02 -0.25 5.70 28.79 0.16 -0.09 16 4 C -0.10 -1.18 5.17 30.60 0.16 -1.03 16 5 C -0.10 -1.58 4.50 30.59 0.14 -1.44 16 6 C -0.13 -1.79 4.25 29.85 0.13 -1.66 16 7 C 0.50 12.14 7.67 87.65 0.67 12.81 16 8 O -0.59 -20.18 15.34 -3.03 -0.05 -20.23 16 9 N -0.61 -13.32 2.80 -817.61 -2.29 -15.61 16 10 C 0.07 0.84 9.15 127.77 1.17 2.01 16 11 C 0.14 3.83 3.46 45.89 0.16 3.99 16 12 H 0.08 2.63 6.96 -2.39 -0.02 2.61 16 13 C -0.12 -2.38 6.47 31.49 0.20 -2.18 16 14 C 0.03 0.72 6.49 86.45 0.56 1.28 16 15 N -0.51 -16.63 5.18 -886.02 -4.59 -21.23 16 16 C 0.05 1.70 5.39 85.56 0.46 2.16 16 17 C 0.44 21.06 7.43 87.66 0.65 21.71 16 18 O -0.62 -35.30 14.01 -3.05 -0.04 -35.34 16 19 N -0.57 -29.43 5.29 -306.99 -1.62 -31.06 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 24 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.04 1.28 5.11 86.45 0.44 1.72 16 29 H 0.24 1.54 7.80 -4.42 -0.03 1.51 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 36 H 0.11 1.19 7.40 -2.39 -0.02 1.18 16 37 H 0.12 0.97 8.11 -2.39 -0.02 0.95 16 38 H 0.09 0.65 7.88 -2.38 -0.02 0.63 16 39 H 0.10 0.82 6.44 -2.39 -0.02 0.80 16 40 H 0.07 0.99 6.37 -2.39 -0.02 0.97 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.10 1.48 7.17 -2.39 -0.02 1.46 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.13 7.92 -2.39 -0.02 1.11 16 45 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 46 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 47 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.05 1.55 6.06 -2.39 -0.01 1.54 16 50 H 0.05 2.38 6.54 -2.39 -0.02 2.36 16 Total: -1.00 -79.21 408.31 1.95 -77.26 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.20 Total: 33.53 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 8.03 Total: 16.25 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -8.22 Total: -116.82 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.09 Total: -55.57 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -79.21 1.95 -77.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715007955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.163 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds