Wall clock time and date at job start Tue Mar 31 2020 18:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99539 * 2 1 4 4 C 1.39671 * 120.00356 * 180.02562 * 2 1 3 5 5 C 1.38931 * 120.07494 * 180.02562 * 4 2 1 6 6 C 1.38084 * 119.92673 * 179.97438 * 5 4 2 7 7 C 1.38309 * 120.07028 * 359.72262 * 6 5 4 8 8 C 1.38267 * 120.15062 * 0.55162 * 7 6 5 9 9 C 1.50696 * 119.96006 * 179.72687 * 8 7 6 10 10 C 1.53002 * 109.47061 * 269.72431 * 9 8 7 11 11 C 1.50703 * 109.47206 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00248 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99737 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99721 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47189 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46930 * 304.99963 * 15 14 13 17 17 O 1.42905 * 109.47079 * 64.99736 * 15 14 13 18 18 C 1.52997 * 109.47143 * 184.99897 * 15 14 13 19 19 N 1.46500 * 109.47007 * 179.97438 * 18 15 14 20 20 C 1.36943 * 120.00062 * 180.02562 * 19 18 15 21 21 H 1.07999 * 119.99847 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00198 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99691 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47023 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47352 * 120.00042 * 24 22 20 27 27 H 1.48504 * 109.46912 * 240.00158 * 24 22 20 28 28 C 1.38121 * 120.07124 * 359.45027 * 8 7 6 29 29 H 1.08999 * 109.46759 * 269.99567 * 1 2 3 30 30 H 1.08998 * 109.47621 * 29.99963 * 1 2 3 31 31 H 1.09003 * 109.46853 * 150.00369 * 1 2 3 32 32 H 1.09009 * 109.47263 * 269.99820 * 3 2 1 33 33 H 1.08999 * 109.47255 * 30.00217 * 3 2 1 34 34 H 1.09010 * 109.47210 * 150.00380 * 3 2 1 35 35 H 1.08005 * 120.04066 * 359.95110 * 5 4 2 36 36 H 1.07997 * 119.96668 * 179.97438 * 6 5 4 37 37 H 1.08004 * 119.92121 * 180.29527 * 7 6 5 38 38 H 1.08997 * 109.47424 * 149.72444 * 9 8 7 39 39 H 1.08996 * 109.47990 * 29.72390 * 9 8 7 40 40 H 1.08996 * 109.47536 * 60.00281 * 10 9 8 41 41 H 1.09005 * 109.46847 * 300.00176 * 10 9 8 42 42 H 0.96993 * 120.00520 * 0.02562 * 13 11 10 43 43 H 1.08997 * 109.47122 * 60.00313 * 14 13 11 44 44 H 1.09005 * 109.47144 * 299.99936 * 14 13 11 45 45 H 0.96702 * 113.99404 * 60.00301 * 17 15 14 46 46 H 1.08992 * 109.47303 * 299.99548 * 18 15 14 47 47 H 1.09002 * 109.47153 * 60.00035 * 18 15 14 48 48 H 0.96998 * 120.00098 * 359.97438 * 19 18 15 49 49 H 0.97001 * 120.00051 * 179.97438 * 23 22 20 50 50 H 1.08002 * 120.03257 * 180.25143 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5527 -1.2113 0.0000 6 6 4.2401 -2.4089 0.0000 7 6 3.5470 -3.6057 0.0053 8 6 2.1644 -3.6076 -0.0010 9 6 1.4136 -4.9142 -0.0014 10 6 1.1600 -5.3562 -1.4441 11 6 0.4086 -6.6626 -1.4446 12 8 0.1062 -7.1886 -0.3945 13 7 0.0728 -7.2463 -2.6120 14 6 -0.6572 -8.5165 -2.6125 15 6 -0.9109 -8.9584 -4.0552 16 1 -1.4241 -8.1620 -4.5942 17 8 0.3364 -9.2388 -4.6938 18 6 -1.7796 -10.2179 -4.0575 19 7 -2.0230 -10.6406 -5.4389 20 6 -2.7818 -11.7524 -5.6912 21 1 -3.2003 -12.3177 -4.8717 22 6 -3.0128 -12.1526 -7.0001 23 7 -2.5031 -11.4633 -7.9988 24 14 -4.0484 -13.6687 -7.3442 25 1 -4.5013 -14.2607 -6.0598 26 1 -5.2305 -13.2866 -8.1578 27 1 -3.2361 -14.6645 -8.0885 28 6 1.4707 -2.4133 -0.0010 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3791 1.5835 -1.0277 33 1 1.6083 2.0284 0.5139 34 1 3.1499 1.1385 0.5138 35 1 4.0946 -0.2770 0.0000 36 1 5.3201 -2.4110 0.0000 37 1 4.0871 -4.5410 0.0101 38 1 0.4607 -4.7860 0.5121 39 1 2.0039 -5.6728 0.5124 40 1 2.1128 -5.4846 -1.9577 41 1 0.5695 -4.5976 -1.9580 42 1 0.3150 -6.8258 -3.4519 43 1 -1.6098 -8.3883 -2.0986 44 1 -0.0665 -9.2752 -2.0991 45 1 0.8482 -9.9394 -4.2666 46 1 -1.2664 -11.0142 -3.5186 47 1 -2.7310 -10.0039 -3.5704 48 1 -1.6473 -10.1326 -6.1749 49 1 -2.6642 -11.7432 -8.9135 50 1 0.3906 -2.4155 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716098848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:44 Heat of formation + Delta-G solvation = -50.510745 kcal Electronic energy + Delta-G solvation = -27335.978158 eV Core-core repulsion = 23363.167208 eV Total energy + Delta-G solvation = -3972.810950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18355 -39.63741 -37.67036 -36.82623 -34.39633 -33.98300 -33.91207 -31.34583 -30.80183 -30.09953 -29.08774 -28.34778 -25.75201 -25.16083 -24.23187 -22.51562 -21.86659 -21.42063 -20.53807 -20.09269 -17.72520 -17.27957 -17.07672 -16.40757 -16.32607 -15.99453 -15.76294 -15.49033 -15.34312 -15.09057 -14.48287 -14.46713 -14.20587 -13.89478 -13.64316 -13.41614 -13.31360 -13.07377 -13.02394 -12.94345 -12.55296 -12.46796 -12.31936 -12.22771 -12.10589 -11.84701 -11.68912 -11.21999 -11.00420 -10.96386 -10.84264 -10.62218 -10.15760 -10.13622 -10.00050 -9.80715 -9.48610 -9.08576 -8.97436 -8.91450 -7.61375 -6.94541 -5.77023 -3.06693 1.15708 1.36279 2.61170 2.73726 3.13577 3.42907 3.48527 3.50839 3.62468 4.40032 4.53768 4.54590 4.58817 4.71763 4.73687 4.79941 4.83804 4.87252 4.90763 4.95645 5.06732 5.13315 5.20734 5.23384 5.25424 5.28136 5.35328 5.38048 5.42466 5.55146 5.61582 5.71734 5.74142 5.82099 5.91451 5.95712 6.02809 6.19574 6.29103 6.41272 6.48388 6.50517 6.60320 6.67123 6.86974 7.15953 7.47737 7.68392 7.94163 8.19737 8.41160 9.52975 10.09616 10.45552 11.45347 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.001509 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.070191 B =18556.691885 C =18908.281444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.641 5.641 3 C 0.094 3.906 4 C 0.214 3.786 5 C -0.203 4.203 6 C -0.071 4.071 7 C -0.173 4.173 8 C -0.034 4.034 9 C -0.065 4.065 10 C -0.133 4.133 11 C 0.510 3.490 12 O -0.546 6.546 13 N -0.723 5.723 14 C 0.089 3.911 15 C 0.089 3.911 16 H 0.104 0.896 17 O -0.552 6.552 18 C 0.126 3.874 19 N -0.726 5.726 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.193 4.193 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.405 0.595 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.374 0.626 46 H 0.023 0.977 47 H 0.028 0.972 48 H 0.389 0.611 49 H 0.255 0.745 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.569 26.243 17.877 34.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.353 5.353 3 C -0.049 4.049 4 C 0.113 3.887 5 C -0.225 4.225 6 C -0.089 4.089 7 C -0.193 4.193 8 C -0.034 4.034 9 C -0.103 4.103 10 C -0.173 4.173 11 C 0.296 3.704 12 O -0.424 6.424 13 N -0.374 5.374 14 C -0.035 4.035 15 C 0.029 3.971 16 H 0.121 0.879 17 O -0.357 6.357 18 C -0.003 4.003 19 N -0.371 5.371 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.215 4.215 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.240 0.760 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.221 0.779 46 H 0.041 0.959 47 H 0.046 0.954 48 H 0.223 0.777 49 H 0.065 0.935 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.924 26.360 18.250 34.207 hybrid contribution -0.249 -0.832 -0.566 1.036 sum 11.675 25.529 17.684 33.177 Atomic orbital electron populations 1.21636 0.79478 1.02746 1.01186 1.46307 1.05003 1.03149 1.80834 1.21616 0.97224 0.84959 1.01111 1.17807 0.91209 0.85583 0.94124 1.20652 0.92056 0.98609 1.11222 1.20870 0.99386 0.91901 0.96782 1.20849 0.93515 0.98005 1.06971 1.19630 0.93608 0.94079 0.96111 1.20335 1.00884 0.93659 0.95405 1.21629 1.01628 0.94947 0.99118 1.20708 0.79401 0.86625 0.83648 1.90705 1.54896 1.65422 1.31365 1.45980 1.58367 1.24240 1.08848 1.22099 0.97335 0.85553 0.98525 1.22386 0.85669 0.98649 0.90380 0.87851 1.86575 1.32001 1.59671 1.57467 1.21197 0.96321 0.92914 0.89818 1.42237 1.61988 1.32167 1.00672 1.19275 1.23725 1.02608 0.91876 0.91148 1.24761 1.01147 0.99385 0.95563 1.69689 1.49148 1.40708 0.98234 0.86111 0.79665 0.82573 0.77786 1.20539 1.21829 1.21820 1.20563 0.99549 0.90555 1.10851 0.93403 0.91590 0.91159 0.93441 0.91650 0.91347 0.86302 0.86230 0.86339 0.90277 0.90050 0.88607 0.88829 0.76025 0.90523 0.91130 0.77931 0.95937 0.95393 0.77655 0.93529 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.19 59.85 0.61 1.12 16 2 N -0.64 -4.59 3.41 -187.54 -0.64 -5.23 16 3 C 0.09 0.46 10.19 59.85 0.61 1.07 16 4 C 0.21 1.87 6.55 -83.79 -0.55 1.32 16 5 C -0.20 -1.66 9.21 -39.38 -0.36 -2.03 16 6 C -0.07 -0.57 10.04 -39.61 -0.40 -0.96 16 7 C -0.17 -1.50 9.69 -39.54 -0.38 -1.88 16 8 C -0.03 -0.30 5.13 -104.66 -0.54 -0.84 16 9 C -0.07 -0.60 4.63 -27.88 -0.13 -0.73 16 10 C -0.13 -1.15 5.68 -27.88 -0.16 -1.31 16 11 C 0.51 6.11 7.83 -10.99 -0.09 6.02 16 12 O -0.55 -8.61 15.98 5.56 0.09 -8.52 16 13 N -0.72 -8.21 5.50 -60.29 -0.33 -8.54 16 14 C 0.09 1.17 5.31 -4.04 -0.02 1.14 16 15 C 0.09 1.35 3.09 -26.73 -0.08 1.27 16 16 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 17 O -0.55 -8.72 13.03 -35.23 -0.46 -9.18 16 18 C 0.13 2.44 5.92 -4.04 -0.02 2.42 16 19 N -0.73 -18.36 5.49 -59.91 -0.33 -18.69 16 20 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C -0.19 -1.72 8.86 -39.38 -0.35 -2.07 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 31 H 0.07 0.39 6.20 -51.93 -0.32 0.07 16 32 H 0.05 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.06 0.23 8.07 -51.93 -0.42 -0.19 16 34 H 0.07 0.30 6.20 -51.92 -0.32 -0.02 16 35 H 0.12 0.77 6.14 -52.48 -0.32 0.45 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 39 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.37 4.96 9.05 45.56 0.41 5.38 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.39 10.54 7.54 -40.82 -0.31 10.23 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.12 0.97 6.14 -52.49 -0.32 0.65 16 LS Contribution 412.67 15.07 6.22 6.22 Total: -1.00 -34.94 412.67 -9.26 -44.20 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.40 Total: 12.85 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.11 Total: -2.92 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.58 Total: -60.09 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.37 Total: -17.70 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.94 -9.26 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716098848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.315 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds